| | gene | name | fitness | t score | description | |
|---|
| b2512 | yfgL | -4.5 | -9.4 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2808 | gcvA | -4.4 | -3.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1185 | dsbB | -4.1 | -2.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3860 | dsbA | -3.4 | -8.1 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1855 | lpxM | -3.3 | -7.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4242 | mgtA | -3.2 | -2.2 | magnesium transporter (NCBI) | compare |
| b4171 | miaA | -3.0 | -4.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2312 | purF | -2.9 | -8.2 | amidophosphoribosyltransferase (NCBI) | compare |
| b4702 | mgtL | -2.8 | -1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0222 | lpcA | -2.7 | -1.9 | phosphoheptose isomerase (NCBI) | compare |
| b2571 | rseB | -2.7 | -11.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b0439 | lon | -2.6 | -3.0 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1882 | cheY | -2.6 | -1.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3844 | fre | -2.5 | -9.7 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2017 | yefM | -2.4 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0688 | pgm | -2.4 | -3.6 | phosphoglucomutase (NCBI) | compare |
| b1291 | sapD | -2.2 | -2.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0632 | dacA | -2.2 | -10.6 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b1438 | ydcQ | -2.2 | -4.1 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0683 | fur | -2.2 | -2.1 | ferric uptake regulator (NCBI) | compare |
| b3052 | rfaE | -2.2 | -2.1 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3493 | pitA | -2.1 | -8.1 | phosphate transporter, low-affinity (NCBI) | compare |
| b1292 | sapC | -2.1 | -2.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0145 | dksA | -2.1 | -4.4 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0080 | fruR | -2.0 | -7.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2501 | ppk | -2.0 | -11.2 | polyphosphate kinase (NCBI) | compare |
| b3164 | pnp | -1.9 | -4.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2318 | truA | -1.9 | -3.4 | tRNA pseudouridine synthase A (NCBI) | compare |
| b0438 | clpX | -1.9 | -3.5 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b0142 | folK | -1.9 | -1.1 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b3979 | thrT | -1.9 | -0.7 | tRNA-Thr (NCBI) | compare |
| b3169 | nusA | -1.9 | -2.1 | transcription elongation factor NusA (NCBI) | compare |
| b2330 | yfcB | -1.8 | -3.2 | putative adenine-specific methylase (VIMSS) | compare |
| b1235 | rssB | -1.8 | -7.0 | response regulator of RpoS (NCBI) | compare |
| b4676 | yoaK | -1.7 | -1.0 | expressed protein (RefSeq) | compare |
| b4006 | purH | -1.7 | -10.6 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) | compare |
| b4203 | rplI | -1.7 | -7.5 | 50S ribosomal protein L9 (NCBI) | compare |
| b2329 | aroC | -1.7 | -8.1 | chorismate synthase (NCBI) | compare |
| b0386 | proC | -1.7 | -3.4 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b0908 | aroA | -1.6 | -8.4 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b3916 | pfkA | -1.6 | -3.9 | 6-phosphofructokinase (NCBI) | compare |
| b3183 | obgE | -1.6 | -2.0 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4005 | purD | -1.6 | -9.5 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b2784 | relA | -1.6 | -11.3 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b0522 | purK | -1.6 | -7.7 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b0726 | sucA | -1.6 | -5.9 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b4375 | prfC | -1.6 | -6.5 | peptide chain release factor 3 (NCBI) | compare |
| b0437 | clpP | -1.6 | -1.1 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b2518 | ndk | -1.5 | -3.4 | nucleoside diphosphate kinase (NCBI) | compare |
| b0049 | apaH | -1.5 | -1.0 | diadenosinetetraphosphatase (NCBI) | compare |
| b1865 | nudB | -1.5 | -1.7 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2912 | ygfA | -1.5 | -2.9 | putative ligase (VIMSS) | compare |
| b3870 | glnA | -1.5 | -3.3 | glutamine synthetase (NCBI) | compare |
| b0019 | nhaA | -1.5 | -11.0 | pH-dependent sodium/proton antiporter (NCBI) | compare |
| b0400 | phoR | -1.5 | -10.4 | sensory histidine kinase in two-component regulatory system with PhoB (NCBI) | compare |
| b2288 | nuoA | -1.5 | -4.4 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3867 | hemN | -1.5 | -10.5 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b3341 | rpsG | -1.5 | -1.7 | 30S ribosomal protein S7 (NCBI) | compare |
| b2277 | nuoM | -1.4 | -6.7 | NADH dehydrogenase subunit M (NCBI) | compare |
| b0226 | dinJ | -1.4 | -5.4 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1176 | minC | -1.4 | -3.0 | septum formation inhibitor (NCBI) | compare |
| b3621 | rfaC | -1.4 | -1.0 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b4175 | hflC | -1.4 | -9.2 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1025 | ycdT | -1.4 | -2.6 | predicted diguanylate cyclase (NCBI) | compare |
| b2414 | cysK | -1.4 | -7.9 | cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) | compare |
| b0889 | lrp | -1.4 | -3.3 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b0053 | surA | -1.4 | -0.9 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3630 | rfaP | -1.4 | -5.6 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1332 | ynaJ | -1.4 | -1.3 | predicted inner membrane protein (NCBI) | compare |
| b3790 | rffC | -1.4 | -3.3 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3792 | wzxE | -1.4 | -2.0 | O-antigen translocase (NCBI) | compare |
| b0200 | gmhB | -1.4 | -0.9 | hypothetical protein (NCBI) | compare |
| b1084 | rne | -1.4 | -3.7 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b3631 | rfaG | -1.3 | -7.9 | glucosyltransferase I (NCBI) | compare |
| b3162 | deaD | -1.3 | -5.4 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b3849 | trkH | -1.3 | -9.4 | potassium transporter (NCBI) | compare |
| b4174 | hflK | -1.3 | -8.6 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2281 | nuoI | -1.3 | -3.7 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2168 | fruK | -1.3 | -1.3 | 1-phosphofructokinase (NCBI) | compare |
| b3204 | ptsN | -1.3 | -5.2 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b2282 | nuoH | -1.3 | -3.9 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3620 | rfaF | -1.3 | -2.8 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3842 | rfaH | -1.3 | -3.7 | transcriptional activator RfaH (NCBI) | compare |
| b2287 | nuoB | -1.2 | -4.2 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1290 | sapF | -1.2 | -1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0741 | pal | -1.2 | -1.6 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0550 | rusA | -1.2 | -3.1 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b0767 | ybhE | -1.2 | -4.6 | 6-phosphogluconolactonase (NCBI) | compare |
| b4414 | tff | -1.2 | -3.2 | unknown RNA (NCBI) | compare |
| b3791 | rffA | -1.2 | -3.6 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0630 | lipB | -1.2 | -1.3 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1109 | ndh | -1.2 | -4.0 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4654 | yjdQ | -1.2 | -5.1 | no description | compare |
| b2683 | ygaH | -1.1 | -3.8 | predicted inner membrane protein (NCBI) | compare |
| b2276 | nuoN | -1.1 | -5.4 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2572 | rseA | -1.1 | -2.3 | anti-sigma factor (NCBI) | compare |
| b3787 | rffD | -1.1 | -6.7 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b2285 | nuoE | -1.1 | -1.7 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1236 | galU | -1.1 | -2.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1293 | sapB | -1.1 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4202 | rpsR | -1.1 | -0.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b4025 | pgi | -1.1 | -7.9 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4180 | rlmB | -1.1 | -6.3 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b4179 | vacB | -1.1 | -4.1 | putative enzyme (VIMSS) | compare |
| b2313 | cvpA | -1.1 | -2.8 | membrane protein required for colicin V production (NCBI) | compare |
| b4146 | yjeK | -1.0 | -2.0 | predicted lysine aminomutase (NCBI) | compare |
| b2278 | nuoL | -1.0 | -6.6 | NADH dehydrogenase subunit L (NCBI) | compare |
| b3977 | tyrU | -1.0 | -1.0 | tRNA-Tyr (NCBI) | compare |
| b2280 | nuoJ | -1.0 | -4.6 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3786 | rffE | -1.0 | -7.2 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b1850 | eda | -1.0 | -1.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b2286 | nuoC | -1.0 | -4.9 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3387 | dam | -1.0 | -4.8 | DNA adenine methylase (NCBI) | compare |
| b2283 | nuoG | -1.0 | -5.3 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b1090 | plsX | -1.0 | -5.0 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b1192 | ldcA | -1.0 | -2.3 | L,D-carboxypeptidase A (NCBI) | compare |
| b0912 | ihfB | -1.0 | -0.6 | integration host factor subunit beta (NCBI) | compare |
| b3205 | yhbJ | -1.0 | -3.7 | hypothetical protein (NCBI) | compare |
| b2188 | yejM | -1.0 | -7.2 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2279 | nuoK | -1.0 | -1.9 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0101 | yacG | -1.0 | -3.0 | zinc-binding protein (NCBI) | compare |
| b3414 | gntY | -1.0 | -4.9 | predicted gluconate transport associated protein (NCBI) | compare |
| b0677 | nagA | -0.9 | -4.9 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b3806 | cyaA | -0.9 | -4.2 | adenylate cyclase (NCBI) | compare |
| b4041 | plsB | -0.9 | -2.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2951 | yggS | -0.9 | -3.2 | predicted enzyme (NCBI) | compare |
| b3398 | yrfF | -0.9 | -3.0 | predicted inner membrane protein (NCBI) | compare |
| b0926 | ycbK | -0.9 | -4.6 | hypothetical protein (NCBI) | compare |
| b0675 | nagD | -0.9 | -5.5 | UMP phosphatase (NCBI) | compare |
| b2421 | cysM | -0.9 | -3.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2499 | purM | -0.9 | -3.8 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2175 | spr | -0.9 | -2.2 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2340 | sixA | -0.9 | -3.7 | phosphohistidine phosphatase (NCBI) | compare |
| b1351 | racC | -0.9 | -0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b3247 | cafA | -0.8 | -6.9 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b1778 | yeaA | -0.8 | -1.8 | methionine sulfoxide reductase B (NCBI) | compare |
| b0564 | appY | -0.8 | -0.8 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b0051 | ksgA | -0.8 | -3.6 | dimethyladenosine transferase (NCBI) | compare |
| b2553 | glnB | -0.8 | -4.4 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b3838 | tatB | -0.8 | -4.4 | sec-independent translocase (NCBI) | compare |
| b2569 | lepA | -0.8 | -2.9 | GTP-binding protein LepA (NCBI) | compare |
| b4201 | priB | -0.8 | -2.2 | primosomal replication protein N (NCBI) | compare |
| b3778 | rep | -0.8 | -4.5 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1551 | b1551 | -0.8 | -0.5 | orf, hypothetical protein (VIMSS) | compare |
| b2504 | yfgG | -0.8 | -1.5 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b3742 | mioC | -0.8 | -3.3 | flavodoxin (NCBI) | compare |
| b1676 | pykF | -0.8 | -3.2 | pyruvate kinase (NCBI) | compare |
| b0724 | sdhB | -0.8 | -3.7 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b0722 | sdhD | -0.8 | -2.8 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b4481 | rffT | -0.8 | -2.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b2576 | srmB | -0.8 | -2.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b3930 | menA | -0.8 | -6.9 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3494 | yhiO | -0.8 | -4.8 | universal stress protein UspB (NCBI) | compare |
| b1874 | cutC | -0.8 | -0.7 | copper homeostasis protein (NCBI) | compare |
| b2707 | srlR | -0.8 | -4.6 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b4178 | yjeB | -0.7 | -3.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0928 | aspC | -0.7 | -4.9 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b4294 | insA-7 | -0.7 | -1.5 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b1281 | pyrF | -0.7 | -1.5 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b2617 | smpA | -0.7 | -3.0 | small membrane protein A (VIMSS) | compare |
| b1107 | nagZ | -0.7 | -3.6 | beta-hexosaminidase (NCBI) | compare |
| b2498 | upp | -0.7 | -2.1 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1982 | amn | -0.7 | -5.6 | AMP nucleosidase (NCBI) | compare |
| b1871 | yecP | -0.7 | -3.2 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3236 | mdh | -0.7 | -4.2 | malate dehydrogenase (NCBI) | compare |
| b4388 | serB | -0.7 | -4.6 | 3-phosphoserine phosphatase (NCBI) | compare |
| b4480 | hdfR | -0.7 | -4.1 | transcriptional regulator HdfR (NCBI) | compare |
| b2904 | gcvH | -0.7 | -1.9 | glycine cleavage system protein H (NCBI) | compare |
| b3203 | yhbH | -0.7 | -2.3 | predicted ribosome-associated, sigma 54 modulation protein (NCBI) | compare |
| b0729 | sucD | -0.7 | -1.8 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2642 | yfjW | -0.7 | -0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0143 | pcnB | -0.7 | -3.4 | poly(A) polymerase I (VIMSS) | compare |
| b2809 | b2809 | -0.7 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2082 | ogrK | -0.7 | -1.2 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b3965 | trmA | -0.7 | -5.6 | tRNA (uracil-5-)-methyltransferase (NCBI) | compare |
| b4390 | nadR | -0.7 | -5.3 | probable nadAB transcriptional regulator (VIMSS) | compare |
| b4570 | lomR | -0.7 | -1.6 | no description | compare |
| b0563 | tfaX | -0.7 | -4.0 | DLP12 prophage; predicted protein (RefSeq) | compare |
| b2906 | visC | -0.7 | -3.7 | hypothetical protein (NCBI) | compare |
| b0209 | yafD | -0.7 | -4.3 | hypothetical protein (NCBI) | compare |
| b2493 | yfgO | -0.7 | -4.8 | predicted inner membrane protein (NCBI) | compare |
| b3021 | ygiT | -0.7 | -1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3237 | argR | -0.7 | -2.5 | arginine repressor (NCBI) | compare |
| b3857 | mobA | -0.7 | -4.4 | molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) | compare |
| b3794 | rffM | -0.7 | -3.6 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2113 | mrp | -0.6 | -4.1 | putative ATPase (VIMSS) | compare |
| b0009 | mog | -0.6 | -4.8 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b3764 | yifE | -0.6 | -2.8 | hypothetical protein (NCBI) | compare |
| b3465 | yhhF | -0.6 | -3.2 | predicted methyltransferase (NCBI) | compare |
| b0783 | moaC | -0.6 | -3.6 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b3911 | cpxA | -0.6 | -2.9 | two-component sensor protein (NCBI) | compare |
| b3706 | trmE | -0.6 | -1.7 | tRNA modification GTPase (NCBI) | compare |
| b0888 | trxB | -0.6 | -2.7 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3628 | rfaB | -0.6 | -4.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b4000 | hupA | -0.6 | -2.9 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0728 | sucC | -0.6 | -2.8 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2905 | gcvT | -0.6 | -4.3 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b4224 | chpS | -0.6 | -2.8 | suppressor of inhibitory function of ChpB, PemI-like, autoregulated (VIMSS) | compare |
| b4139 | aspA | -0.6 | -4.8 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b0723 | sdhA | -0.6 | -4.3 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |