| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +3.1 | 22.8 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1954 | dsrA | +2.2 | 10.5 | regulatory antisense RNA (NCBI) | compare |
| b4402 | yjjY | +2.0 | 4.7 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | +1.7 | 13.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2741 | rpoS | +1.6 | 12.6 | RNA polymerase sigma factor (NCBI) | compare |
| b1823 | cspC | +1.4 | 5.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b1150 | ymfR | +1.4 | 2.8 | e14 prophage; predicted protein (NCBI) | compare |
| b0014 | dnaK | +1.3 | 4.8 | molecular chaperone DnaK (NCBI) | compare |
| b4552 | yrhC | +1.2 | 2.1 | no description | compare |
| b1642 | slyA | +1.1 | 4.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4133 | cadC | +1.1 | 9.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b2531 | iscR | +1.0 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3229 | sspA | +1.0 | 4.7 | stringent starvation protein A (NCBI) | compare |
| b2136 | yohD | +0.9 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b2659 | b2659 | +0.9 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +0.9 | 3.1 | hypothetical protein (NCBI) | compare |
| b3753 | rbsR | +0.9 | 7.5 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4699 | fnrS | +0.8 | 1.3 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1942 | fliJ | +0.8 | 2.4 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3516 | gadX | +0.8 | 7.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0240 | crl | +0.8 | 5.7 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2934 | cmtB | +0.8 | 1.0 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3002 | yqhA | +0.8 | 2.0 | hypothetical protein (NCBI) | compare |
| b2911 | ssrS | +0.8 | 1.1 | 6S regulatory RNA (NCBI) | compare |
| b3755 | yieP | +0.8 | 3.8 | predicted transcriptional regulator (NCBI) | compare |
| b3206 | npr | +0.7 | 3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0082 | mraW | +0.7 | 3.8 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2181 | yejG | +0.7 | 3.8 | hypothetical protein (NCBI) | compare |
| b1765 | ydjA | +0.7 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b1658 | purR | +0.7 | 5.4 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b3397 | nudE | +0.7 | 5.0 | ADP-ribose diphosphatase (NCBI) | compare |
| b1246 | oppD | +0.7 | 5.1 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b3146 | yraL | +0.7 | 5.1 | predicted methyltransferase (NCBI) | compare |
| b3512 | GadE | +0.7 | 2.6 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4066 | yjcF | +0.7 | 0.5 | hypothetical protein (NCBI) | compare |
| b3863 | polA | +0.7 | 0.7 | DNA polymerase I (NCBI) | compare |
| b2829 | ptsP | +0.6 | 6.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2189 | proL | +0.6 | 2.2 | tRNA-Pro (NCBI) | compare |
| b1245 | oppC | +0.6 | 4.9 | oligopeptide transporter subunit (NCBI) | compare |
| b1233 | ychJ | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | +0.6 | 3.5 | shikimate kinase II (NCBI) | compare |
| b2221 | atoD | +0.6 | 3.5 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b2093 | gatB | +0.6 | 3.7 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2502 | ppx | +0.6 | 4.7 | exopolyphosphatase (NCBI) | compare |
| b1607 | ydgC | +0.6 | 1.6 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3082 | ygjM | +0.6 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1179 | ycgL | +0.6 | 2.6 | conserved protein (NCBI) | compare |
| b0436 | tig | +0.6 | 3.5 | trigger factor (NCBI) | compare |
| b4345 | mcrC | +0.6 | 1.0 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1244 | oppB | +0.6 | 4.6 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b4407 | thiS | +0.6 | 2.0 | sulfur carrier protein ThiS (NCBI) | compare |
| b2666 | yqaE | +0.6 | 2.4 | predicted membrane protein (NCBI) | compare |
| b4071 | nrfB | +0.5 | 1.8 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1992 | cobS | +0.5 | 1.2 | cobalamin synthase (NCBI) | compare |
| b4426 | isrA | +0.5 | 2.3 | unknown RNA (NCBI) | compare |
| b3163 | nlpI | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b1243 | oppA | +0.5 | 3.7 | oligopeptide transporter subunit (NCBI) | compare |
| b1860 | ruvB | +0.5 | 0.4 | Holliday junction DNA helicase B (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1953 | b1953 | +0.5 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b0122 | yacC | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1269 | rluB | +0.5 | 3.0 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1306 | pspC | +0.5 | 2.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b0263 | afuB | +0.5 | 2.4 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b3500 | gor | +0.5 | 1.2 | glutathione reductase (NCBI) | compare |
| b3495 | uspA | +0.5 | 4.3 | universal stress global response regulator (NCBI) | compare |
| b1247 | oppF | +0.5 | 3.3 | oligopeptide transporter subunit (NCBI) | compare |
| b1429 | tehA | +0.5 | 1.3 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b2953 | yggU | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1358 | ydaT | +0.5 | 1.3 | Rac prophage; predicted protein (NCBI) | compare |
| b2668 | ygaP | +0.5 | 3.8 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1422 | ydcI | +0.5 | 2.2 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b0705 | ybfL | +0.5 | 0.5 | putative receptor protein (VIMSS) | compare |
| b2960 | yggH | +0.5 | 3.4 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b4590 | ybfK | +0.5 | 0.7 | hypothetical protein (RefSeq) | compare |
| b1597 | asr | +0.5 | 1.9 | acid shock protein (VIMSS) | compare |
| b1743 | spy | +0.5 | 1.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b0976 | hyaE | +0.5 | 2.4 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b2433 | b2433 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1919 | yedO | +0.5 | 1.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b0623 | cspE | +0.5 | 1.2 | cold shock protein E (NCBI) | compare |
| b1591 | b1591 | +0.5 | 1.7 | putative oxidoreductase component (VIMSS) | compare |
| b3884 | yihW | +0.5 | 3.4 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b1492 | gadC | +0.4 | 3.2 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b3779 | gpp | +0.4 | 4.1 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b0851 | nfsA | +0.4 | 2.3 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b3429 | glgA | +0.4 | 3.8 | glycogen synthase (NCBI) | compare |
| b1831 | proQ | +0.4 | 2.4 | putative solute/DNA competence effector (NCBI) | compare |
| b0696 | kdpC | +0.4 | 1.5 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1001 | yccE | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | +0.4 | 0.9 | shikimate kinase I (NCBI) | compare |
| b1595 | ynfL | +0.4 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3032 | cpdA | +0.4 | 3.4 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b0982 | yccY | +0.4 | 2.3 | putative phosphatase (VIMSS) | compare |
| b4214 | cysQ | +0.4 | 3.5 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b2212 | alkB | +0.4 | 1.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1330 | ynaI | +0.4 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.5 | predicted stress response protein (NCBI) | compare |
| b1524 | yneH | +0.4 | 0.8 | predicted glutaminase (NCBI) | compare |
| b1536 | ydeI | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b1305 | pspB | +0.4 | 1.2 | phage shock protein B (NCBI) | compare |
| b0965 | b0965 | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4532 | yncN | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4397 | creA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3959 | argB | +0.4 | 2.8 | acetylglutamate kinase (RefSeq) | compare |
| b3446 | yrhB | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0864 | artP | +0.4 | 1.7 | arginine transporter subunit (NCBI) | compare |
| b4655 | ythA | +0.4 | 0.5 | expressed protein (RefSeq) | compare |
| b2759 | ygcK | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b3858 | yihD | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b4572 | ylbE | +0.4 | 2.0 | no description | compare |
| b2742 | nlpD | +0.4 | 2.4 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4606 | ypfM | +0.4 | 2.4 | hypothetical protein (RefSeq) | compare |
| b0802 | ybiJ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1482 | osmC | +0.4 | 1.4 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.6 | predicted transcriptional regulator (NCBI) | compare |
| b3443 | yrhA | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1317 | ycjU | +0.4 | 2.3 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b0104 | guaC | +0.4 | 3.2 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b4577 | sgrS | +0.4 | 1.4 | small antisense RNA (NCBI) | compare |
| b0661 | miaB | +0.4 | 3.2 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b4049 | dusA | +0.4 | 2.8 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b0660 | ybeZ | +0.4 | 2.4 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b1250 | kch | +0.4 | 2.7 | voltage-gated potassium channel (NCBI) | compare |
| b1160 | elbA | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b1007 | b1007 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0821 | ybiU | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b2510 | b2510 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2993 | hybD | +0.4 | 1.3 | predicted maturation element for hydrogenase 2 (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.2 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b2479 | gcvR | +0.4 | 2.1 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1186 | nhaB | +0.4 | 2.6 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b2004 | yeeU | +0.4 | 1.2 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1151 | ymfO | +0.4 | 1.6 | e14 prophage; conserved protein (RefSeq) | compare |
| b1382 | ynbE | +0.4 | 1.0 | predicted lipoprotein (NCBI) | compare |
| b4403 | yjtD | +0.4 | 2.3 | predicted rRNA methyltransferase (NCBI) | compare |
| b0300 | ykgA | +0.4 | 1.7 | putative ARAC-type regulatory protein (VIMSS) | compare |
| b4222 | ytfP | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4124 | dcuR | +0.4 | 2.9 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | compare |
| b2690 | yqaB | +0.3 | 1.7 | predicted hydrolase (NCBI) | compare |
| b4538 | yoeF | +0.3 | 1.0 | hypothetical protein (RefSeq) | compare |
| b4062 | soxS | +0.3 | 1.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4387 | ytjB | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1394 | paaG | +0.3 | 1.6 | enoyl-CoA hydratase (NCBI) | compare |
| b4585 | sroB | +0.3 | 0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b2055 | wcaE | +0.3 | 0.2 | predicted glycosyl transferase (NCBI) | compare |
| b4536 | yobH | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1830 | prc | +0.3 | 1.5 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1835 | yebU | +0.3 | 2.1 | putative nucleolar proteins (VIMSS) | compare |
| b1324 | tpx | +0.3 | 1.9 | thiol peroxidase (NCBI) | compare |
| b0217 | yafT | +0.3 | 2.0 | predicted aminopeptidase (NCBI) | compare |
| b3432 | glgB | +0.3 | 2.9 | glycogen branching enzyme (NCBI) | compare |
| b0991 | ymcE | +0.3 | 1.6 | cold shock gene (NCBI) | compare |
| b2998 | yghW | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | +0.3 | 1.5 | flagellar biosynthesis protein R (NCBI) | compare |
| b1841 | yobA | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b2814 | metZ | +0.3 | 0.8 | tRNA-Met (NCBI) | compare |
| b3752 | rbsK | +0.3 | 2.4 | ribokinase (NCBI) | compare |
| b1773 | ydjI | +0.3 | 1.1 | predicted aldolase (NCBI) | compare |
| b1271 | yciK | +0.3 | 1.4 | short chain dehydrogenase (NCBI) | compare |
| b0850 | ybjC | +0.3 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b1516 | lsrB | +0.3 | 1.9 | AI2 transporter (NCBI) | compare |
| b3816 | corA | +0.3 | 2.6 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1755 | ynjC | +0.3 | 1.8 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b4094 | phnN | +0.3 | 1.6 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b1480 | sra | +0.3 | 0.7 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b0225 | yafQ | +0.3 | 1.6 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4595 | yciY | +0.3 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1602 | pntB | +0.3 | 1.9 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.5 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b3934 | cytR | +0.3 | 2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1619 | hdhA | +0.3 | 2.6 | 7-alpha-hydroxysteroid dehydrogenase (NCBI) | compare |
| b0636 | ybeA | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b3471 | yhhQ | +0.3 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b1213 | ychQ | +0.3 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b0310 | ykgH | +0.3 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b1586 | b1586 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1172 | ymgG | +0.3 | 1.8 | conserved protein, UPF0757 family (RefSeq) | compare |
| b3354 | yheU | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1198 | dhaM | +0.3 | 1.6 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | compare |
| b1821 | b1821 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4559 | yjdO | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b0955 | ycbZ | +0.3 | 2.2 | predicted peptidase (NCBI) | compare |
| b1219 | ychN | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1448 | yncA | +0.3 | 0.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1075 | flgD | +0.3 | 1.7 | flagellar basal body rod modification protein D (NCBI) | compare |
| b3912 | cpxR | +0.3 | 2.1 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b4293 | fecI | +0.3 | 1.4 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b0279 | yagM | +0.3 | 0.2 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2341 | yfcX | +0.3 | 2.5 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b0450 | glnK | +0.3 | 0.8 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b4125 | dcuS | +0.3 | 2.4 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | compare |
| b0829 | gsiA | +0.3 | 2.2 | fused predicted peptide transport subunits of ABC superfamily: ATP-binding components (RefSeq) | compare |
| b1540 | ydfH | +0.3 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2698 | recX | +0.3 | 0.8 | RecA regulator RecX (NCBI) | compare |
| b1667 | ydhR | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b2458 | eutI | +0.3 | 2.2 | predicted phosphotransacetylase subunit (NCBI) | compare |
| b1814 | sdaA | +0.3 | 1.2 | L-serine deaminase I (NCBI) | compare |
| b2643 | yfjX | +0.3 | 1.3 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |