| | gene | name | fitness | t score | description | |
|---|
| b2846 | yqeH | +1.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3210 | arcB | +1.5 | 11.0 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b3929 | rraA | +1.5 | 11.6 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2741 | rpoS | +1.3 | 10.4 | RNA polymerase sigma factor (NCBI) | compare |
| b3933 | ftsN | +1.2 | 7.9 | essential cell division protein (NCBI) | compare |
| b1085 | b1085 | +1.1 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1600 | mdtJ | +1.1 | 2.7 | multidrug efflux system transporter (NCBI) | compare |
| b2684 | mprA | +1.1 | 3.5 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0122 | yacC | +1.0 | 5.8 | orf, hypothetical protein (VIMSS) | compare |
| b2531 | iscR | +1.0 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3146 | yraL | +0.9 | 6.9 | predicted methyltransferase (NCBI) | compare |
| b2571 | rseB | +0.9 | 6.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1954 | dsrA | +0.9 | 3.3 | regulatory antisense RNA (NCBI) | compare |
| b4313 | fimE | +0.9 | 6.9 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1830 | prc | +0.8 | 4.0 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1961 | dcm | +0.8 | 1.4 | DNA cytosine methylase (NCBI) | compare |
| b3443 | yrhA | +0.8 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2829 | ptsP | +0.8 | 7.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2007 | yeeX | +0.8 | 1.4 | conserved protein (RefSeq) | compare |
| b2314 | dedD | +0.8 | 3.8 | putative lipoprotein (VIMSS) | compare |
| b2217 | rcsB | +0.8 | 5.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1607 | ydgC | +0.8 | 2.5 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1936 | intG | +0.8 | 1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2279 | nuoK | +0.8 | 2.0 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3206 | npr | +0.7 | 4.4 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 5.8 | predicted peptidase (NCBI) | compare |
| b2659 | b2659 | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2749 | ygbE | +0.7 | 5.4 | conserved inner membrane protein (NCBI) | compare |
| b0131 | panD | +0.7 | 3.4 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b0178 | hlpA | +0.7 | 4.7 | periplasmic chaperone (NCBI) | compare |
| b4000 | hupA | +0.7 | 3.8 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0925 | ycbB | +0.7 | 5.0 | predicted carboxypeptidase (NCBI) | compare |
| b3844 | fre | +0.6 | 4.2 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1160 | elbA | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b4133 | cadC | +0.6 | 5.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b0232 | yafN | +0.6 | 0.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3349 | slyD | +0.6 | 4.0 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b1520 | b1520 | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1630 | rsxD | +0.6 | 3.8 | electron transport complex protein RnfD (NCBI) | compare |
| b1382 | ynbE | +0.6 | 1.7 | predicted lipoprotein (NCBI) | compare |
| b2071 | yegJ | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1381 | ydbH | +0.6 | 4.7 | hypothetical protein (NCBI) | compare |
| b1247 | oppF | +0.6 | 4.1 | oligopeptide transporter subunit (NCBI) | compare |
| b4215 | ytfI | +0.6 | 1.4 | hypothetical protein (NCBI) | compare |
| b0082 | mraW | +0.6 | 3.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3163 | nlpI | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b2688 | gshA | +0.6 | 4.2 | glutamate--cysteine ligase (NCBI) | compare |
| b3009 | yghB | +0.6 | 3.8 | conserved inner membrane protein (NCBI) | compare |
| b4590 | ybfK | +0.6 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1575 | dicB | +0.6 | 1.3 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1824 | yobF | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b0685 | ybfE | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1380 | ldhA | +0.6 | 1.9 | D-lactate dehydrogenase (NCBI) | compare |
| b4585 | sroB | +0.5 | 1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b1205 | ychH | +0.5 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b1758 | b1758 | +0.5 | 1.2 | putative cytochrome oxidase (VIMSS) | compare |
| b2617 | smpA | +0.5 | 2.5 | small membrane protein A (VIMSS) | compare |
| b1246 | oppD | +0.5 | 3.8 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b2512 | yfgL | +0.5 | 2.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3628 | rfaB | +0.5 | 4.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b4458 | oxyS | +0.5 | 1.5 | global regulatory RNA (NCBI) | compare |
| b1025 | ycdT | +0.5 | 1.5 | predicted diguanylate cyclase (NCBI) | compare |
| b2170 | setB | +0.5 | 2.4 | lactose/glucose efflux system (NCBI) | compare |
| b3119 | tdcR | +0.5 | 1.6 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1628 | rsxB | +0.5 | 2.6 | electron transport complex protein RnfB (NCBI) | compare |
| b4529 | ydbJ | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b2859 | ygeO | +0.5 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1557 | cspB | +0.5 | 1.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b4642 | yoeD | +0.5 | 1.8 | no description | compare |
| b3627 | rfaI | +0.5 | 3.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1919 | yedO | +0.5 | 2.1 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1728 | ydjM | +0.5 | 1.7 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b1070 | flgN | +0.5 | 1.2 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0294 | ykgK | +0.5 | 2.2 | predicted regulator (NCBI) | compare |
| b3890 | yiiF | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2363 | yfdT | +0.5 | 1.2 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2948 | yqgE | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4552 | yrhC | +0.5 | 0.7 | no description | compare |
| b1186 | nhaB | +0.4 | 3.2 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b0661 | miaB | +0.4 | 3.9 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3658 | selC | +0.4 | 2.2 | tRNA-Sec (NCBI) | compare |
| b1837 | yebW | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2450 | yffS | +0.4 | 1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4050 | yjbO | +0.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1480 | sra | +0.4 | 1.3 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b4012 | yjaB | +0.4 | 1.5 | predicted acetyltransferase (NCBI) | compare |
| b3387 | dam | +0.4 | 2.8 | DNA adenine methylase (NCBI) | compare |
| b1627 | rsxA | +0.4 | 2.1 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1233 | ychJ | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b3523 | yhjE | +0.4 | 3.6 | predicted transporter (NCBI) | compare |
| b1730 | ydjO | +0.4 | 0.7 | predicted protein (RefSeq) | compare |
| b1253 | yciA | +0.4 | 1.5 | predicted hydrolase (NCBI) | compare |
| b3816 | corA | +0.4 | 3.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1258 | yciF | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | +0.4 | 1.5 | toxic polypeptide, small (NCBI) | compare |
| b1194 | ycgR | +0.4 | 1.9 | protein involved in flagellar function (NCBI) | compare |
| b4222 | ytfP | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +0.4 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2101 | yegW | +0.4 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3753 | rbsR | +0.4 | 3.5 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1685 | ydiH | +0.4 | 1.1 | predicted protein (RefSeq) | compare |
| b4071 | nrfB | +0.4 | 1.5 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1048 | mdoG | +0.4 | 2.5 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1823 | cspC | +0.4 | 1.3 | stress protein, member of the CspA-family (NCBI) | compare |
| b0933 | ssuB | +0.4 | 2.2 | alkanesulfonate transporter subunit (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.7 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2229 | b2229 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0240 | crl | +0.4 | 3.2 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2759 | ygcK | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b3611 | yibN | +0.4 | 2.1 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b1335 | ogt | +0.4 | 1.7 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b3292 | zntR | +0.4 | 1.9 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b1591 | b1591 | +0.4 | 0.9 | putative oxidoreductase component (VIMSS) | compare |
| b1548 | nohA | +0.4 | 1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1236 | galU | +0.4 | 1.2 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3672 | ivbL | +0.4 | 1.4 | ilvB operon leader peptide (NCBI) | compare |
| b3500 | gor | +0.4 | 0.9 | glutathione reductase (NCBI) | compare |
| b2947 | gshB | +0.4 | 1.8 | glutathione synthetase (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.6 | no description | compare |
| b1743 | spy | +0.4 | 1.5 | envelope stress induced periplasmic protein (NCBI) | compare |
| b1877 | yecT | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4394 | yjjX | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1761 | gdhA | +0.4 | 2.7 | glutamate dehydrogenase (NCBI) | compare |
| b1387 | maoC | +0.4 | 2.6 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b0754 | aroG | +0.4 | 2.7 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b0247 | ykfG | +0.4 | 0.9 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2204 | napH | +0.4 | 2.0 | quinol dehydrogenase membrane component (NCBI) | compare |
| b4181 | yjfI | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +0.4 | 2.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3101 | yqjF | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2937 | speB | +0.4 | 2.3 | agmatinase (NCBI) | compare |
| b2502 | ppx | +0.4 | 2.7 | exopolyphosphatase (NCBI) | compare |
| b1835 | yebU | +0.4 | 2.1 | putative nucleolar proteins (VIMSS) | compare |
| b1678 | ynhG | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b0982 | yccY | +0.4 | 2.0 | putative phosphatase (VIMSS) | compare |
| b2236 | yfaE | +0.4 | 1.7 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1244 | oppB | +0.4 | 2.2 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1151 | ymfO | +0.3 | 2.0 | e14 prophage; conserved protein (RefSeq) | compare |
| b1196 | ycgY | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1090 | plsX | +0.3 | 2.0 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b1492 | gadC | +0.3 | 2.8 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1642 | slyA | +0.3 | 1.3 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0296 | ykgM | +0.3 | 1.2 | 50S ribosomal protein L31 (NCBI) | compare |
| b1363 | trkG | +0.3 | 0.4 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b3234 | degQ | +0.3 | 2.8 | serine endoprotease, periplasmic (NCBI) | compare |
| b3042 | b3042 | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0976 | hyaE | +0.3 | 2.1 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b4520 | ymgF | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b1132 | hflD | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b1287 | yciW | +0.3 | 1.7 | putative oxidoreductase (VIMSS) | compare |
| b0388 | aroL | +0.3 | 1.8 | shikimate kinase II (NCBI) | compare |
| b4503 | yafF | +0.3 | 0.6 | no description | compare |
| b0426 | yajQ | +0.3 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b0617 | citD | +0.3 | 1.1 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1763 | topB | +0.3 | 1.9 | DNA topoisomerase III (NCBI) | compare |
| b1283 | osmB | +0.3 | 2.7 | lipoprotein (NCBI) | compare |
| b0212 | gloB | +0.3 | 1.6 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b0382 | yaiB | +0.3 | 2.8 | hypothetical protein (NCBI) | compare |
| b3739 | atpI | +0.3 | 2.3 | membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS) | compare |
| b4371 | rsmC | +0.3 | 2.8 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b3884 | yihW | +0.3 | 2.0 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b4598 | yncL | +0.3 | 1.2 | hypothetical protein (RefSeq) | compare |
| b0759 | galE | +0.3 | 2.0 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b4451 | ryhB | +0.3 | 1.1 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2743 | pcm | +0.3 | 1.9 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b3446 | yrhB | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4049 | dusA | +0.3 | 2.4 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b2840 | ygeA | +0.3 | 2.3 | predicted racemase (NCBI) | compare |
| b2099 | yegU | +0.3 | 1.9 | predicted hydrolase (NCBI) | compare |
| b2783 | chpR | +0.3 | 1.4 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b0464 | acrR | +0.3 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3071 | yqjI | +0.3 | 1.5 | predicted transcriptional regulator (NCBI) | compare |
| b0263 | afuB | +0.3 | 1.3 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b2934 | cmtB | +0.3 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1336 | ydaH | +0.3 | 2.0 | putative pump protein (transport) (VIMSS) | compare |
| b1295 | ymjA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3554 | yiaF | +0.3 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b2435 | amiA | +0.3 | 2.1 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1869 | yecN | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0782 | moaB | +0.3 | 1.1 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1969 | yedW | +0.3 | 1.7 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b0717 | ybgP | +0.3 | 2.0 | predicted assembly protein (NCBI) | compare |
| b0792 | ybhR | +0.3 | 1.9 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0864 | artP | +0.3 | 1.6 | arginine transporter subunit (NCBI) | compare |
| b1948 | fliP | +0.3 | 1.4 | flagellar biosynthesis protein P (NCBI) | compare |
| b2110 | yehC | +0.3 | 0.7 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3961 | oxyR | +0.3 | 2.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2447 | yffP | +0.3 | 1.7 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1518 | lsrG | +0.3 | 1.0 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1618 | uidR | +0.3 | 1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2455 | eutE | +0.3 | 1.4 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b1848 | yebG | +0.3 | 0.8 | conserved protein regulated by LexA (NCBI) | compare |
| b1334 | fnr | +0.3 | 1.0 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.2 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b2300 | yfcE | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2156 | lysP | +0.3 | 2.2 | lysine transporter (NCBI) | compare |
| b2299 | yfcD | +0.3 | 1.6 | predicted NUDIX hydrolase (NCBI) | compare |
| b1306 | pspC | +0.3 | 1.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b0280 | yagN | +0.3 | 1.9 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3516 | gadX | +0.3 | 2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |