Experiment set52S644 for Pseudomonas putida KT2440

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_2645 -4.3 -3.0 magnesium transporter, ATP-dependent compare
PP_2646 -4.2 -2.6 conserved protein of unknown function compare
PP_1428 -4.0 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_0948 -3.8 -1.2 Phosphocarrier protein HPr compare
PP_5155 -3.8 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4143 -3.6 -2.5 conserved protein of unknown function compare
PP_0593 -3.5 -1.1 putative ribosome-binding factor compare
PP_1088 -3.5 -7.7 Argininosuccinate synthase compare
PP_3511 -3.4 -6.5 Branched-chain-amino-acid aminotransferase compare
PP_0184 -3.4 -5.2 Argininosuccinate lyase compare
PP_5145 -3.1 -9.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4337 -3.0 -6.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5289 -3.0 -3.6 Acetylglutamate kinase compare
PP_1224 -2.9 -2.0 periplasmic subunit of the TolQRA transport system compare
PP_4680 -2.9 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -2.9 -4.0 phosphoserine phosphatase compare
PP_1906 -2.9 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_5652 -2.9 -2.2 conserved protein of unknown function, phage origin compare
PP_4678 -2.9 -11.0 Ketol-acid reductoisomerase compare
PP_0396 -2.8 -9.7 conserved protein of unknown function compare
PP_0628 -2.8 -3.7 conserved protein of unknown function compare
PP_1986 -2.8 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_0395 -2.7 -9.6 putative type IV piliation protein compare
PP_4679 -2.7 -5.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4561 -2.7 -0.9 stress response protein compare
PP_1988 -2.6 -7.0 3-isopropylmalate dehydrogenase compare
PP_0397 -2.6 -12.8 protein kinase compare
PP_0951 -2.6 -8.5 Ribosome hibernation promoting factor compare
PP_1985 -2.6 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_1860 -2.6 -3.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_1410 -2.6 -1.2 conserved protein of unknown function compare
PP_0122 -2.6 -2.7 conserved exported protein of unknown function compare
PP_5098 -2.5 -5.4 methionine biosynthesis protein MetW compare
PP_0417 -2.4 -11.9 Anthranilate synthase component 1 compare
PP_5128 -2.4 -6.8 Dihydroxy-acid dehydratase compare
PP_2414 -2.4 -2.1 conserved exported protein of unknown function compare
PP_0949 -2.4 -1.6 putative ATP-binding protein UPF0042 compare
PP_2341 -2.3 -1.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4696 -2.3 -3.8 Nitrogen regulation protein NR(I) compare
PP_2001 -2.2 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_5456 -2.2 -1.3 conserved protein of unknown function compare
PP_5097 -2.2 -7.9 homoserine O-acetyltransferase compare
PP_4505 -2.2 -5.2 Sensor histidine kinase compare
PP_3505 -2.2 -1.7 conserved protein of unknown function compare
PP_1079 -2.2 -4.6 Ornithine carbamoyltransferase compare
PP_1912 -2.0 -3.4 Phosphate acyltransferase compare
PP_4593 -2.0 -1.3 conserved protein of unknown function compare
PP_2088 -2.0 -2.4 RNA polymerase sigma factor SigX compare
PP_1779 -2.0 -4.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0191 -2.0 -2.3 Transcriptional regulatory protein AlgQ compare
PP_1430 -2.0 -7.1 putative periplasmic serine endoprotease DegP-like compare
PP_4938 -2.0 -7.2 putative Glycosyl transferase compare
PP_0194 -2.0 -3.7 Transcriptional regulatory protein AlgP compare
PP_4940 -2.0 -6.1 Putative glycosyltransferase compare
PP_0916 -1.9 -2.1 Amino acid transporter LysE compare
PP_1268 -1.9 -1.3 putative HtrA suppressor protein sohA compare
PP_1468 -1.9 -1.5 Tyrosine recombinase XerD compare
PP_0083 -1.9 -3.4 tryptophan synthase beta chain compare
PP_5014 -1.9 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1778 -1.9 -4.0 Lipopolysaccharide ABC export system, permease protein compare
PP_5217 -1.9 -7.4 Polyphosphate kinase compare
PP_0421 -1.8 -6.2 Anthranilate phosphoribosyltransferase compare
PP_3821 -1.8 -7.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0566 -1.8 -0.8 translation-related factor compare
PP_0082 -1.8 -2.4 tryptophan synthase alpha chain compare
PP_0547 -1.8 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2668 -1.8 -1.8 ABC efflux transporter, ATP-binding protein compare
PP_5045 -1.8 -1.7 tRNA sulfurtransferase compare
PP_4122 -1.8 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3411 -1.8 -1.0 conserved protein of unknown function compare
PP_4532 -1.7 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0420 -1.7 -4.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4722 -1.7 -2.3 Transcription elongation factor GreA compare
PP_0642 -1.7 -2.7 conserved membrane protein of unknown function compare
PP_0185 -1.7 -6.5 Positive alginate biosynthesis regulatory protein compare
PP_4343 -1.7 -3.9 Flagellar biosynthesis protein FlhF compare
PP_1198 -1.6 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5000 -1.6 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_3318 -1.6 -1.0 conserved protein of unknown function compare
PP_0340 -1.6 -7.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5303 -1.6 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0683 -1.6 -2.4 conserved protein of unknown function compare
PP_4109 -1.6 -1.2 conserved protein of unknown function compare
PP_0960 -1.6 -4.0 phospholipid ABC transporter binding protein compare
PP_4936 -1.6 -5.8 O-antigen polymerase compare
PP_0422 -1.6 -4.1 Indole-3-glycerol phosphate synthase compare
PP_0735 -1.6 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_4424 -1.6 -2.0 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0293 -1.6 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4286 -1.6 -4.0 allantoinase compare
PP_4591 -1.6 -3.1 Ribonuclease D compare
PP_4504 -1.6 -1.2 conserved exported protein of unknown function compare
PP_0872 -1.5 -3.8 Peptide chain release factor 3 compare
PP_1099 -1.5 -1.8 Cold shock protein CapB compare
PP_2299 -1.5 -2.8 Trigger factor compare
PP_2862 -1.5 -5.4 Undecaprenyl-diphosphatase compare
PP_4952 -1.5 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4158 -1.5 -4.9 sensor protein compare
PP_5717 -1.5 -1.5 conserved protein of unknown function compare
PP_4058 -1.5 -5.8 1,4-alpha-glucan branching enzyme compare
PP_2903 -1.5 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1716 -1.5 -1.6 Transcriptional regulator, Cro/CI family compare
PP_5177 -1.5 -3.8 spermidine/putrescine ABC transporter - permease subunit compare
PP_4066 -1.5 -2.6 methylglutaconyl-CoA hydratase compare
PP_1309 -1.5 -4.3 conserved exported protein of unknown function compare
PP_t12 -1.5 -0.8 tRNA-Thr compare
PP_1871 -1.5 -3.1 Protease HtpX compare
PP_1068 -1.5 -2.6 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0123 -1.4 -4.2 DNA polymerase I, 5 compare
PP_1629 -1.4 -4.0 Protein RecA compare
PP_4478 -1.4 -4.9 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1387 -1.4 -3.0 Probable HTH-type transcriptional regulator TtgR compare
PP_5337 -1.4 -2.5 LysR family transcriptional regulator compare
PP_2327 -1.4 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4480 -1.4 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_5430 -1.4 -2.4 protein of unknown function compare
PP_5748 -1.4 -0.6 cytochrome c heme lyase subunit compare
PP_3508 -1.4 -1.5 Protein CobW compare
PP_5475 -1.4 -1.0 conserved protein of unknown function compare
PP_4581 -1.4 -1.9 putative amidotransferase compare
PP_5225 -1.4 -0.8 frataxin compare
PP_4961 -1.3 -1.3 putative Lipoprotein compare
PP_2816 -1.3 -2.6 putative Transcriptional regulator NfxB compare
PP_5582 -1.3 -0.9 conserved protein of unknown function compare
PP_0276 -1.3 -0.8 Transcriptional regulator, Cro/CI family compare
PP_4738 -1.3 -1.6 conserved exported protein of unknown function compare
PP_5027 -1.3 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0852 -1.3 -2.4 Transcriptional regulator, Cro/CI family compare
PP_1995 -1.3 -3.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -1.3 -5.4 Histidinol dehydrogenase compare
PP_0965 -1.3 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0086 -1.3 -1.4 conserved protein of unknown function compare
PP_5185 -1.3 -2.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3365 -1.3 -0.8 Acetolactate synthase compare
PP_4529 -1.3 -2.2 conserved protein of unknown function compare
PP_1632 -1.3 -1.1 conserved protein of unknown function compare
PP_5705 -1.3 -1.3 protein of unknown function compare
PP_0957 -1.3 -1.1 D-arabinose 5-phosphate isomerase compare
PP_0292 -1.3 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_t13 -1.2 -2.0 tRNA-Lys compare
PP_0345 -1.2 -2.5 putative Heptose kinase WapP compare
PP_4271 -1.2 -0.7 conserved protein of unknown function compare
PP_0850 -1.2 -3.6 Dual-specificity RNA methyltransferase RlmN compare
PP_5310 -1.2 -2.9 junction-specific ATP-dependent DNA helicase compare
PP_3164 -1.2 -2.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4379 -1.2 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1845 -1.2 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4980 -1.2 -3.8 ATP-dependent RNA helicase compare
PP_5017 -1.2 -0.7 Sec-independent protein translocase protein TatB compare
PP_2028 -1.2 -3.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4913 -1.2 -2.8 conserved protein of unknown function compare
PP_5051 -1.2 -1.1 conserved protein of unknown function compare
PP_0289 -1.2 -4.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5146 -1.2 -4.2 RNA pyrophosphohydrolase compare
PP_1216 -1.2 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1439 -1.2 -1.2 conserved exported protein of unknown function compare
PP_2677 -1.2 -2.1 conserved exported protein of unknown function compare
PP_3808 -1.2 -1.1 Antibiotic synthesis protein MbtH compare
PP_1673 -1.2 -3.0 cobyrinate a,c-diamide synthase compare
PP_5090 -1.2 -1.4 putative cell division protein compare
PP_0182 -1.2 -2.4 conserved protein of unknown function compare
PP_1729 -1.2 -0.9 conserved protein of unknown function compare
PP_2447 -1.1 -3.6 conserved exported protein of unknown function compare
PP_1025 -1.1 -4.3 2-isopropylmalate synthase compare
PP_2513 -1.1 -2.8 4-oxalomesaconate tautomerase compare
PP_0366 -1.1 -3.8 dethiobiotin synthetase compare
PP_2370 -1.1 -1.5 conserved protein of unknown function compare
PP_0108 -1.1 -2.1 conserved protein of unknown function compare
PP_1214 -1.1 -1.4 putative transcriptional regulatory protein compare
PP_1864 -1.1 -1.8 conserved protein of unknown function compare
PP_4633 -1.1 -3.4 conserved protein of unknown function, DUF1244 family compare
PP_2153 -1.1 -1.4 conserved protein of unknown function compare
PP_5393 -1.1 -0.8 putative metal-binding chaperone compare
PP_3143 -1.1 -3.5 Transcriptional regulator, LysR family compare
PP_1676 -1.1 -2.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2152 -1.1 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_4985 -1.1 -3.4 16S rRNA m3U1498 methyltransferase compare
PP_2172 -1.1 -2.1 conserved exported protein of unknown function compare
PP_0905 -1.1 -0.9 conserved exported protein of unknown function compare
PP_2171 -1.1 -2.5 Transporter, LysE family compare
PP_0697 -1.1 -4.0 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4829 -1.1 -1.7 putative precorrin-3B synthase compare
PP_3555 -1.1 -3.8 putative Transmembrane sensor compare
PP_4879 -1.1 -1.7 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0439 -1.1 -3.1 conserved protein of unknown function compare
PP_0414 -1.1 -2.8 Polyamine ABC transporter, permease protein compare
PP_2705 -1.1 -2.1 conserved protein of unknown function compare
PP_2137 -1.1 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_0236 -1.1 -1.4 NAD(P)H-dependent FMN reductase subunit compare
PP_2217 -1.1 -1.8 enoyl-CoA hydratase compare
PP_1317 -1.1 -1.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2472 -1.1 -2.9 putative transcriptional regulator, MerR family compare
PP_2773 -1.1 -1.1 conserved protein of unknown function compare
PP_1215 -1.1 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0962 -1.1 -1.2 toluene-tolerance protein compare
PP_4726 -1.1 -1.3 Chaperone protein DnaJ compare
PP_4124 -1.1 -1.0 NADH-quinone oxidoreductase subunit G compare
PP_5168 -1.1 -1.8 sulfate/thiosulfate import ATP-binding protein compare
PP_4859 -1.1 -1.8 Transcriptional regulator, TetR family compare
PP_4701 -1.1 -0.6 glucose-6-phosphate isomerase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms