Experiment set52S644 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PP_3519 +5.5 10.6 putative Lipoprotein compare
PP_1650 +5.5 34.5 Sensor protein GacS compare
PP_4099 +5.4 37.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1655 +4.7 7.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1656 +4.5 15.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4799 +3.4 1.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0574 +3.3 17.1 DNA-binding response regulator, LuxR family compare
PP_4724 +2.9 1.9 Carbamoyl-phosphate synthase small chain compare
PP_4999 +2.9 1.7 dihydroorotase-like protein compare
PP_2441 +2.8 1.4 conserved protein of unknown function compare
PP_4723 +2.7 1.9 Carbamoyl-phosphate synthase large chain compare
PP_3245 +2.5 2.7 conserved protein of unknown function compare
PP_4452 +2.4 2.4 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_2000 +2.4 1.6 amidophosphoribosyl transferase compare
PP_4288 +2.4 1.5 ureidoglycolate lyase compare
PP_4964 +2.3 2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0022 +2.2 2.5 hypothetical protein compare
PP_1757 +2.2 1.6 DNA-binding transcriptional dual regulator compare
PP_2313 +2.2 1.8 conserved membrane protein of unknown function compare
PP_3052 +2.1 3.0 conserved protein of unknown function compare
PP_1124 +2.1 2.3 conserved membrane protein of unknown function compare
PP_1176 +2.0 1.9 conserved protein of unknown function compare
PP_0833 +2.0 1.3 queuine tRNA-ribosyltransferase compare
PP_3891 +1.9 1.4 conserved protein of unknown function compare
PP_0806 +1.9 15.9 putative Surface adhesion protein compare
PP_4171 +1.9 7.2 conserved exported protein of unknown function compare
PP_1044 +1.9 1.7 Lipoprotein UxpA compare
PP_5693 +1.8 2.4 conserved protein of unknown function compare
PP_0805 +1.8 9.3 Outer membrane efflux protein compare
PP_2765 +1.8 3.0 putative Sulfonate monooxygenase MsuD compare
PP_0804 +1.7 9.2 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0685 +1.7 1.4 conserved protein of unknown function compare
PP_3286 +1.7 3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3063 +1.7 2.8 Pyocin R2_PP, tail formation protein compare
PP_4693 +1.7 3.1 RNA polymerase-binding transcription factor DksA compare
PP_5106 +1.7 2.8 conserved inner membrane protein compare
PP_4499 +1.7 1.7 putative maturation enzyme compare
PP_2649 +1.6 2.1 Transcriptional regulator, LysR family compare
PP_2976 +1.6 2.8 putative transposase compare
PP_5329 +1.6 1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2695 +1.6 2.3 Transcriptional regulator, LysR family compare
PP_0119 +1.6 1.6 putative zinc uptake regulation protein ZUR compare
PP_0803 +1.6 8.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0120 +1.5 3.1 putative zinc ABC transporter compare
PP_4814 +1.5 1.6 ATP-dependent protease La domain protein compare
PP_4804 +1.5 1.0 RlpA-like lipoprotein compare
PP_4700 +1.5 1.0 pantothenate synthetase compare
PP_2210 +1.5 2.3 LysR family transcriptional regulator compare
PP_3051 +1.5 1.6 Pyocin R2_PP, tail spike protein compare
PP_4830 +1.5 1.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_4262 +1.4 1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3359 +1.4 1.9 putative Hydroxycinnamic acid degradation regulator compare
PP_3562 +1.4 1.6 conserved exported protein of unknown function compare
PP_1605 +1.4 1.7 Ribonuclease HII compare
PP_5157 +1.4 2.2 conserved exported protein of unknown function compare
PP_5085 +1.4 6.3 malic enzyme B compare
PP_5359 +1.4 2.5 CobW/P47K family protein compare
PP_3763 +1.4 1.2 putative CobF protein compare
PP_3058 +1.3 1.9 conserved protein of unknown function compare
PP_1562 +1.3 1.5 putative Phage terminase, small subunit compare
PP_3022 +1.3 1.6 Transcriptional regulator, AraC family compare
PP_1834 +1.3 1.3 conserved protein of unknown function compare
PP_2291 +1.3 1.3 conserved protein of unknown function compare
PP_5083 +1.3 2.3 putative Type IV pili biogenesis protein PilM compare
PP_3476 +1.3 1.9 Type II secretion system protein G compare
PP_1536 +1.3 2.1 conserved protein of unknown function compare
PP_2373 +1.3 1.0 conserved protein of unknown function compare
PP_2720 +1.3 2.1 conserved protein of unknown function compare
PP_0258 +1.3 1.4 regulator of murein cross-linking compare
PP_4418 +1.3 1.9 conserved protein of unknown function compare
PP_5502 +1.3 0.6 ribosome modulation factor compare
PP_1045 +1.3 0.9 Type II secretion pathway protein XcpP compare
PP_1697 +1.2 1.0 transcriptional regulator, GntR family compare
PP_1654 +1.2 3.1 cysteine synthase B compare
PP_0339 +1.2 0.8 Pyruvate dehydrogenase E1 component compare
PP_4942 +1.2 1.9 conserved protein of unknown function compare
PP_2683 +1.2 1.9 putative sensory box histidine kinase/response regulator compare
PP_2281 +1.2 1.5 putative Capsid assembly protein compare
PP_1541 +1.2 2.1 putative Methyltransferase compare
PP_2436 +1.2 2.0 Transcriptional regulator, LysR family compare
PP_0719 +1.2 1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4895 +1.2 0.8 tRNA dimethylallyltransferase compare
PP_2969 +1.2 2.0 putative repressor of copper utilisation proteins compare
PP_5328 +1.2 0.8 putative phosphate transport system permease protein compare
PP_0914 +1.2 4.1 GGDEF domain protein compare
PP_3946 +1.1 1.6 HTH-type transcriptional repressor NicR compare
PP_0740 +1.1 1.9 Transcriptional regulator, MerR family compare
PP_1056 +1.1 2.0 putative Iron-chelator utilization protein compare
PP_0989 +1.1 2.0 glycine cleavage system H protein 1 compare
PP_3414 +1.1 1.5 Methyl-accepting chemotaxis transducer/sensory box protein compare
PP_4734 +1.1 5.7 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_2107 +1.1 2.1 conserved protein of unknown function compare
PP_5580 +1.1 1.3 protein of unknown function compare
PP_0922 +1.1 2.6 conserved protein of unknown function compare
PP_0257 +1.1 1.4 protein sulfur transferase compare
PP_0299 +1.1 2.4 conserved protein of unknown function compare
PP_5706 +1.1 2.1 Sec translocation complex - SecG subunit compare
PP_1584 +1.1 3.1 conserved protein of unknown function compare
PP_1241 +1.1 1.0 conserved protein of unknown function compare
PP_0232 +1.1 1.2 ATP-binding taurine transporter subunit compare
PP_3541 +1.1 2.2 Transporter, MgtC family compare
PP_4616 +1.1 2.5 conserved protein of unknown function compare
PP_2101 +1.1 2.1 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_2682 +1.1 2.2 Fe-containing alcohol dehydrogenase compare
PP_3205 +1.1 1.3 Fumarylacetoacetate hydrolase family protein compare
PP_2403 +1.0 1.0 Chemotaxis protein CheY compare
PP_1404 +1.0 1.2 conserved protein of unknown function compare
PP_4497 +1.0 1.3 conserved protein of unknown function compare
PP_2583 +1.0 1.6 Acetyltransferase, GNAT family compare
PP_0825 +1.0 3.1 phosphonates import ATP-binding protein compare
PP_2426 +1.0 2.3 coniferyl alcohol dehydrogenase compare
PP_2030 +1.0 2.0 conserved protein of unknown function compare
PP_0871 +1.0 2.2 putative Glycine betaine/carnitine/choline ABC transporter, permease protein compare
PP_2796 +1.0 1.6 conserved protein of unknown function compare
PP_0425 +1.0 1.9 conserved protein of unknown function compare
PP_1552 +1.0 2.8 putative Phage replication protein compare
PP_3662 +1.0 4.5 conserved protein of unknown function compare
PP_2959 +1.0 1.9 Alkylhydroperoxidase AhpD domain protein compare
PP_2882 +1.0 1.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1499 +1.0 3.9 conserved protein of unknown function compare
PP_4348 +1.0 2.0 putative Cystathionine beta-lyase compare
PP_2459 +1.0 1.3 ribose pyranase compare
PP_5053 +1.0 4.8 Protein-export protein SecB compare
PP_0785 +1.0 2.1 putative cysZ protein, required for sulfate transport compare
PP_2231 +1.0 1.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0407 +1.0 2.1 DnaJ-like protein DjlA compare
PP_5093 +0.9 1.1 twitching motility protein compare
PP_0630 +0.9 0.9 DNA gyrase inhibitor YacG compare
PP_1113 +0.9 4.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4899 +0.9 1.8 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
PP_0139 +0.9 1.4 putative Lipoprotein compare
PP_1167 +0.9 1.9 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_4215 +0.9 3.1 pyoverdine biosynthesis related protein compare
PP_4642 +0.9 0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_2540 +0.9 1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1699 +0.9 1.6 2-pyrone-4,6-dicarboxylic acid hydrolase compare
PP_2722 +0.9 1.7 conserved protein of unknown function compare
PP_5376 +0.9 1.8 conserved exported protein of unknown function compare
PP_3593 +0.9 1.4 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_5575 +0.9 1.6 conserved protein of unknown function compare
PP_5216 +0.9 0.8 exopolyphosphatase compare
PP_4835 +0.9 1.2 conserved exported protein of unknown function compare
PP_5439 +0.9 1.1 conserved protein of unknown function compare
PP_1096 +0.9 1.7 putative electron transport complex protein compare
PP_2737 +0.9 1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3323 +0.9 1.6 CobW/P47K family protein compare
PP_4419 +0.9 1.6 transposase compare
PP_1742 +0.9 1.9 conserved inner membrane protein of unknown function compare
PP_2142 +0.9 1.2 Cell division inhibitor SulA compare
PP_3233 +0.9 2.4 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_1578 +0.9 1.8 conserved protein of unknown function compare
PP_3398 +0.8 1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0042 +0.8 2.7 conserved exported protein of unknown function compare
PP_0929 +0.8 2.4 putative Lipoprotein compare
PP_0888 +0.8 0.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2408 +0.8 1.5 cobalt-zinc-cadmium resistance protein compare
PP_4837 +0.8 1.6 conserved protein of unknown function compare
PP_2596 +0.8 1.5 putative ABC transporter, permease/ATP-binding protein compare
PP_4471 +0.8 1.3 Magnesium transporter compare
PP_5176 +0.8 0.8 conserved protein of unknown function compare
PP_1875 +0.8 2.4 Sensor histidine kinase/response regulator compare
PP_0611 +0.8 1.8 Type IV pili biogenesis protein PilE compare
PP_4208 +0.8 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5546 +0.8 0.8 conserved protein of unknown function compare
PP_1028 +0.8 2.2 Transcriptional regulator, LysR family compare
PP_2280 +0.8 1.2 conserved protein of unknown function compare
PP_4362 +0.8 1.5 conserved protein of unknown function compare
PP_3621 +0.8 2.0 vanillin dehydrogenase, iorA-like component (from data) compare
PP_4569 +0.8 1.4 conserved protein of unknown function compare
PP_0360 +0.8 2.5 Molybdate transport regulator compare
PP_4010 +0.8 1.8 DNA replication inhibitor compare
PP_t11 +0.8 1.1 tRNA-Lys compare
PP_2640 +0.8 1.3 Acetyltransferase, GNAT family compare
PP_0117 +0.8 1.3 Zn(2+) ABC transporter - permease subunit compare
PP_1017 +0.8 1.9 mannose/glucose ABC transporter, permease protein compare
PP_5137 +0.8 2.2 ferric iron ABC transporter, ATP-binding protein compare
PP_5605 +0.8 1.8 conserved exported protein of unknown function compare
PP_5162 +0.8 2.1 conserved exported protein of unknown function compare
PP_5353 +0.8 2.4 conserved exported protein of unknown function compare
PP_4643 +0.8 1.7 Xanthine/uracil permease family protein compare
PP_2325 +0.8 1.5 2-dehydropantoate 2-reductase compare
PP_5512 +0.8 2.4 protein of unknown function compare
PP_3565 +0.8 1.4 Transporter, LysE family compare
PP_5666 +0.8 1.3 putative microcin B17-like processing protein, McbB family compare
PP_2568 +0.8 0.8 Ring-cleaving dioxygenase compare
PP_0412 +0.8 2.4 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1926 +0.8 1.6 putative phosphotyrosine-protein phosphatase compare
PP_3678 +0.8 2.9 conserved protein of unknown function compare
PP_2409 +0.8 1.0 cobalt-zinc-cadmium resistance protein compare
PP_4367 +0.8 1.7 Flagellar assembly protein FliH compare
PP_3760 +0.8 3.8 putative methyltransferase compare
PP_4246 +0.8 2.1 Periplasmic binding protein compare
PP_3481 +0.8 1.6 conserved exported protein of unknown function compare
PP_3417 +0.8 2.8 D-gluconate transporter compare
PP_5007 +0.8 1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2452 +0.8 1.9 conserved protein of unknown function compare
PP_0856 +0.8 0.7 conserved lipoprotein of unknown function compare
PP_2397 +0.8 1.5 EF hand domain protein compare
PP_3265 +0.8 0.8 putative phosphohydrolase of unknown function compare
PP_1115 +0.7 1.7 putative Lipoprotein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms