Experiment set52S624 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_1460 -5.5 -11.8 putative Membrane protein compare
PP_1088 -5.1 -8.5 Argininosuccinate synthase compare
PP_4143 -5.1 -3.5 conserved protein of unknown function compare
PP_2645 -4.9 -13.0 magnesium transporter, ATP-dependent compare
PP_5185 -4.7 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1216 -4.2 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2320 -4.1 -9.0 conserved exported protein of unknown function compare
PP_4505 -3.9 -7.3 Sensor histidine kinase compare
PP_0232 -3.6 -1.3 ATP-binding taurine transporter subunit compare
PP_2322 -3.6 -2.5 Major outer membrane lipoprotein compare
PP_5289 -3.6 -4.6 Acetylglutamate kinase compare
PP_5110 -3.5 -1.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0760 -3.5 -4.4 conserved membrane protein of unknown function compare
PP_4004 -3.5 -2.4 DNA translocase FtsK compare
PP_0440 -3.4 -3.4 Elongation factor Tu-A compare
PP_1268 -3.4 -2.0 putative HtrA suppressor protein sohA compare
PP_5338 -3.4 -3.3 aspartate ammonia-lyase compare
PP_1328 -3.3 -2.3 Protein MraZ compare
PP_2907 -3.2 -3.7 DNA-binding response regulator compare
PP_4952 -3.0 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5337 -3.0 -5.7 LysR family transcriptional regulator compare
PP_0152 -3.0 -2.0 conserved exported protein of unknown function compare
PP_0393 -3.0 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0888 -3.0 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1623 -2.9 -4.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_4940 -2.9 -8.2 Putative glycosyltransferase compare
PP_4517 -2.9 -2.4 conserved protein of unknown function compare
PP_1237 -2.9 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0901 -2.8 -8.3 DNA-binding response regulator compare
PP_4532 -2.8 -3.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1325 -2.8 -8.4 putative lipoprotein compare
PP_4058 -2.8 -10.3 1,4-alpha-glucan branching enzyme compare
PP_5456 -2.8 -1.4 conserved protein of unknown function compare
PP_1898 -2.8 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_0566 -2.8 -1.0 translation-related factor compare
PP_0083 -2.8 -6.8 tryptophan synthase beta chain compare
PP_4994 -2.7 -1.9 conserved protein of unknown function compare
PP_5055 -2.7 -3.8 Sulfurtransferase compare
PP_1719 -2.7 -7.2 Tail-specific protease prc compare
PP_4910 -2.7 -2.0 conserved protein of unknown function compare
PP_2433 -2.7 -2.2 conserved protein of unknown function compare
PP_5084 -2.6 -9.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1994 -2.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_0848 -2.6 -2.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2379 -2.6 -4.5 putative cytochrome oxidase biogenesis protein compare
PP_0413 -2.6 -11.3 Polyamine ABC transporter, permease protein conserved
PP_0184 -2.5 -5.8 Argininosuccinate lyase compare
PP_5267 -2.5 -1.8 putative cytochrome c5 compare
PP_0214 -2.5 -7.7 4-aminobutyrate aminotransferase compare
PP_3821 -2.5 -9.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4720 -2.4 -2.7 putative RNA binding protein compare
PP_5001 -2.4 -2.7 protease HslVU, ATPase component compare
PP_4824 -2.4 -5.8 Sensor histidine kinase/response regulator compare
PP_4122 -2.4 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1201 -2.4 -4.9 conserved exported protein of unknown function compare
PP_0022 -2.4 -1.0 hypothetical protein compare
PP_0414 -2.4 -3.1 Polyamine ABC transporter, permease protein compare
PP_0834 -2.4 -1.6 Sec translocation complex subunit YajC compare
PP_5014 -2.3 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1198 -2.3 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0293 -2.3 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0902 -2.3 -8.4 integral membrane sensor signal transduction histidine kinase compare
PP_4944 -2.3 -4.0 Carbamoyltransferase compare
PP_0691 -2.2 -1.5 Glutamate 5-kinase compare
PP_1912 -2.2 -4.6 Phosphate acyltransferase compare
PP_4874 -2.2 -1.1 50S ribosomal protein L9 compare
PP_2088 -2.2 -3.0 RNA polymerase sigma factor SigX compare
PP_4342 -2.2 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_0995 -2.2 -5.7 conserved membrane protein of unknown function compare
PP_0127 -2.2 -1.5 Thiol:disulfide interchange protein compare
PP_4120 -2.2 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_4073 -2.1 -1.8 conserved exported protein of unknown function compare
PP_5331 -2.1 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1860 -2.1 -4.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_0801 -2.1 -1.1 conserved exported protein of unknown function compare
PP_2160 -2.1 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4546 -2.1 -4.1 ATP-dependent helicase HrpA compare
PP_5054 -2.1 -2.3 glutaredoxin 3 compare
PP_5225 -2.0 -1.1 frataxin compare
PP_4130 -2.0 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5095 -2.0 -1.3 pyrroline-5-carboxylate reductase compare
PP_3902 -2.0 -2.7 conserved protein of unknown function compare
PP_1097 -2.0 -1.0 Methionine--tRNA ligase compare
PP_2906 -2.0 -4.6 Sensor histidine kinase compare
PP_5007 -2.0 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0484 -2.0 -6.3 transporter of an unknown substrate compare
PP_4722 -2.0 -4.2 Transcription elongation factor GreA compare
PP_4265 -2.0 -1.3 DNA-binding transcriptional dual regulator compare
PP_1202 -2.0 -7.6 putative enzyme involved in modification of phospholipids conserved
PP_4785 -2.0 -4.4 conserved exported protein of unknown function compare
PP_2336 -1.9 -3.8 aconitate hydratase 1 compare
PP_0938 -1.9 -10.0 conserved protein of unknown function compare
PP_1269 -1.9 -1.1 Universal stress protein family compare
PP_0434 -1.9 -3.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0276 -1.9 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4993 -1.9 -1.8 Glutathione synthetase compare
PP_0872 -1.9 -6.2 Peptide chain release factor 3 compare
PP_1695 -1.9 -6.7 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0313 -1.9 -1.9 putative electron transfer flavoprotein beta subunit compare
PP_4684 -1.8 -5.3 conserved protein of unknown function with kinase-like domain compare
PP_4941 -1.8 -4.5 conserved exported protein of unknown function compare
PP_1430 -1.8 -5.7 putative periplasmic serine endoprotease DegP-like compare
PP_1629 -1.8 -5.7 Protein RecA compare
PP_4943 -1.8 -1.6 putative Glycosyl transferase compare
PP_5350 -1.8 -3.2 Transcriptional regulator, RpiR family compare
PP_4320 -1.8 -4.7 cytochrome c-type biogenesis protein compare
PP_5000 -1.8 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_2402 -1.8 -1.6 putative Sensor histidine kinase compare
PP_3300 -1.8 -5.1 Transcriptional regulator, tetR family compare
PP_1008 -1.8 -2.4 RNA polymerase subunit sigma-24 compare
PP_5322 -1.8 -4.4 putative metal ion transporter compare
PP_4263 -1.8 -2.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4475 -1.8 -5.7 succinylglutamate desuccinylase compare
PP_5310 -1.8 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_0273 -1.7 -2.9 conserved protein of unknown function compare
PP_1663 -1.7 -7.2 conserved exported protein of unknown function compare
PP_1493 -1.7 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4261 -1.7 -3.0 cation-transporting P-type ATPase compare
PP_5706 -1.7 -2.0 Sec translocation complex - SecG subunit compare
PP_1215 -1.7 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_2107 -1.7 -1.3 conserved protein of unknown function compare
PP_3603 -1.7 -4.7 Transcriptional regulator, GntR family compare
PP_4880 -1.7 -5.3 exoribonuclease R compare
PP_4126 -1.7 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_2145 -1.7 -2.1 beta-N-acetylglucosaminidase compare
PP_4268 -1.7 -1.1 nucleoid-associated broad specificity regulator compare
PP_4481 -1.7 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5230 -1.7 -3.2 Tyrosine recombinase XerC compare
PP_1099 -1.7 -1.7 Cold shock protein CapB compare
PP_2302 -1.7 -4.3 DNA-binding, ATP-dependent protease compare
PP_4129 -1.7 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0846 -1.7 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_0719 -1.7 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5216 -1.6 -1.1 exopolyphosphatase compare
PP_1317 -1.6 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4253 -1.6 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_1232 -1.6 -3.5 conserved exported protein of unknown function compare
PP_0758 -1.6 -5.6 conserved protein of unknown function compare
PP_0290 -1.6 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5353 -1.6 -3.9 conserved exported protein of unknown function compare
PP_3474 -1.6 -2.8 putative Curli fiber protein CsgE compare
PP_1217 -1.6 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4499 -1.6 -2.9 putative maturation enzyme compare
PP_4892 -1.6 -3.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1074 -1.6 -2.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4124 -1.6 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_1664 -1.6 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4480 -1.6 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_4227 -1.6 -1.4 conserved protein of unknown function compare
PP_1598 -1.6 -4.6 regulatory intramembrane protein RIP zinc protease compare
PP_4787 -1.5 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3649 -1.5 -2.7 Transcriptional regulator, GntR family compare
PP_0951 -1.5 -5.3 Ribosome hibernation promoting factor compare
PP_4340 -1.5 -3.1 response regulator for chemotactic signal transduction compare
PP_4803 -1.5 -4.3 D-alanyl-D-alanine carboxypeptidase compare
PP_1238 -1.5 -4.5 putative Lipoprotein compare
PP_0984 -1.5 -3.4 conserved membrane protein of unknown function compare
PP_1214 -1.5 -2.2 putative transcriptional regulatory protein compare
PP_1528 -1.5 -1.1 conserved protein of unknown function compare
PP_1783 -1.5 -1.4 dTDP-glucose pyrophosphorylase compare
PP_1906 -1.5 -3.0 ribosomal large subunit pseudouridine synthase C compare
PP_3999 -1.5 -3.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2122 -1.5 -2.1 molybdenum cofactor biosynthesis protein B compare
PP_1190 -1.5 -3.1 conserved protein of unknown function compare
PP_2646 -1.5 -0.9 conserved protein of unknown function compare
PP_4891 -1.5 -3.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1829 -1.5 -1.4 Hydrolase, alpha/beta fold family compare
PP_4045 -1.5 -2.0 conserved protein of unknown function compare
PP_5076 -1.5 -8.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_0967 -1.5 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4650 -1.4 -3.2 Ubiquinol oxidase subunit II, cyanide insensitive compare
PP_4789 -1.4 -2.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0202 -1.4 -3.9 CBS domain-containing protein compare
PP_3519 -1.4 -0.9 putative Lipoprotein compare
PP_0082 -1.4 -3.4 tryptophan synthase alpha chain compare
PP_2087 -1.4 -2.1 CmpX protein compare
PP_4264 -1.4 -4.7 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0003 -1.4 -2.6 16S RNA methyltransferase compare
PP_1779 -1.4 -4.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0058 -1.4 -6.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0833 -1.4 -0.9 queuine tRNA-ribosyltransferase compare
PP_5352 -1.4 -7.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0401 -1.4 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_2880 -1.4 -2.1 Transcriptional regulator, TetR family compare
PP_1731 -1.4 -2.6 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_5294 -1.4 -4.3 Ribonuclease PH compare
PP_1224 -1.4 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_1734 -1.4 -1.8 Probable septum site-determining protein MinC compare
PP_2341 -1.4 -0.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1142 -1.4 -0.8 conserved protein of unknown function compare
PP_1909 -1.4 -2.9 putative septum formation protein compare
PP_0164 -1.4 -3.4 conserved protein of unknown function compare
PP_0966 -1.4 -5.6 Histidinol dehydrogenase compare
PP_3971 -1.4 -1.1 conserved protein of unknown function compare
PP_4008 -1.4 -4.0 ATP-dependent serine protease compare
PP_2700 -1.3 -2.0 AhpC/TSA family protein compare
PP_5093 -1.3 -1.0 twitching motility protein compare
PP_0725 -1.3 -4.0 conserved hypothetical TPR repeat protein compare
PP_2060 -1.3 -1.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3481 -1.3 -1.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 13 genes in this experiment

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms