Experiment set52S622 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_1460 -5.7 -7.8 putative Membrane protein compare
PP_0760 -5.4 -4.0 conserved membrane protein of unknown function compare
PP_2645 -5.0 -11.6 magnesium transporter, ATP-dependent compare
PP_4143 -4.8 -3.3 conserved protein of unknown function compare
PP_5289 -4.8 -3.3 Acetylglutamate kinase compare
PP_0184 -4.7 -8.4 Argininosuccinate lyase compare
PP_1088 -4.4 -9.9 Argininosuccinate synthase compare
PP_2320 -4.3 -7.7 conserved exported protein of unknown function compare
PP_5017 -4.0 -1.2 Sec-independent protein translocase protein TatB compare
PP_1215 -4.0 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5185 -3.9 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0902 -3.6 -9.1 integral membrane sensor signal transduction histidine kinase compare
PP_0293 -3.5 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5000 -3.5 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_0901 -3.3 -7.9 DNA-binding response regulator compare
PP_0413 -3.2 -13.6 Polyamine ABC transporter, permease protein conserved
PP_0938 -3.2 -12.0 conserved protein of unknown function compare
PP_1430 -3.2 -9.9 putative periplasmic serine endoprotease DegP-like compare
PP_4943 -3.2 -2.1 putative Glycosyl transferase compare
PP_3821 -3.1 -10.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2646 -3.0 -2.7 conserved protein of unknown function compare
PP_3649 -3.0 -2.9 Transcriptional regulator, GntR family compare
PP_4058 -2.9 -9.2 1,4-alpha-glucan branching enzyme compare
PP_5055 -2.9 -4.4 Sulfurtransferase compare
PP_1719 -2.8 -6.0 Tail-specific protease prc compare
PP_4726 -2.8 -3.0 Chaperone protein DnaJ compare
PP_0951 -2.8 -9.0 Ribosome hibernation promoting factor compare
PP_1598 -2.8 -6.0 regulatory intramembrane protein RIP zinc protease compare
PP_2379 -2.8 -3.7 putative cytochrome oxidase biogenesis protein compare
PP_5095 -2.7 -1.6 pyrroline-5-carboxylate reductase compare
PP_1202 -2.7 -12.8 putative enzyme involved in modification of phospholipids conserved
PP_0888 -2.7 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_1623 -2.7 -3.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_2322 -2.7 -3.1 Major outer membrane lipoprotein compare
PP_1237 -2.6 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -2.6 -1.8 conserved protein of unknown function compare
PP_1898 -2.6 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_1695 -2.5 -9.3 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_5706 -2.5 -1.7 Sec translocation complex - SecG subunit compare
PP_5084 -2.5 -9.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0414 -2.5 -4.2 Polyamine ABC transporter, permease protein compare
PP_4260 -2.4 -4.9 conserved protein of unknown function compare
PP_0393 -2.4 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1216 -2.4 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1994 -2.4 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_4532 -2.4 -2.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1201 -2.3 -5.2 conserved exported protein of unknown function compare
PP_4651 -2.3 -6.9 Ubiquinol oxidase subunit I, cyanide insensitive compare
PP_2711 -2.3 -5.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5027 -2.3 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0290 -2.3 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1702 -2.3 -4.8 Recombination-associated protein RdgC compare
PP_4720 -2.2 -2.8 putative RNA binding protein compare
PP_3902 -2.2 -3.0 conserved protein of unknown function compare
PP_5098 -2.2 -6.7 methionine biosynthesis protein MetW compare
PP_4126 -2.2 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_5350 -2.2 -2.5 Transcriptional regulator, RpiR family compare
PP_1763 -2.2 -3.5 putative oxidoreductase compare
PP_4122 -2.1 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0834 -2.1 -2.3 Sec translocation complex subunit YajC compare
PP_1410 -2.1 -1.2 conserved protein of unknown function compare
PP_4940 -2.1 -7.3 Putative glycosyltransferase compare
PP_5337 -2.1 -5.1 LysR family transcriptional regulator compare
PP_4874 -2.1 -1.2 50S ribosomal protein L9 compare
PP_1906 -2.1 -3.2 ribosomal large subunit pseudouridine synthase C compare
PP_4505 -2.1 -4.8 Sensor histidine kinase compare
PP_0872 -2.1 -7.1 Peptide chain release factor 3 compare
PP_4880 -2.0 -4.1 exoribonuclease R compare
PP_0691 -2.0 -1.4 Glutamate 5-kinase compare
PP_4836 -2.0 -2.6 conserved exported protein of unknown function compare
PP_4342 -2.0 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_1325 -2.0 -7.2 putative lipoprotein compare
PP_0127 -2.0 -1.4 Thiol:disulfide interchange protein compare
PP_4262 -2.0 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2160 -2.0 -5.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4891 -1.9 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4650 -1.9 -2.6 Ubiquinol oxidase subunit II, cyanide insensitive compare
PP_1217 -1.9 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4941 -1.9 -4.0 conserved exported protein of unknown function compare
PP_3551 -1.9 -1.6 DNA-binding response regulator, LuxR family compare
PP_2001 -1.9 -8.1 O-succinylhomoserine sulfhydrylase compare
PP_0214 -1.9 -6.6 4-aminobutyrate aminotransferase compare
PP_4785 -1.9 -3.8 conserved exported protein of unknown function compare
PP_0310 -1.8 -10.0 putative dimethylglycine dehydrogenase subunit compare
PP_2088 -1.8 -2.2 RNA polymerase sigma factor SigX compare
PP_1366 -1.8 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1493 -1.8 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1912 -1.8 -3.7 Phosphate acyltransferase compare
PP_4722 -1.8 -3.4 Transcription elongation factor GreA compare
PP_5094 -1.8 -4.0 putative enzyme with PLP binding domain compare
PP_0001 -1.8 -2.0 probable chromosome-partitioning protein compare
PP_4004 -1.8 -3.3 DNA translocase FtsK compare
PP_1734 -1.8 -1.2 Probable septum site-determining protein MinC compare
PP_5310 -1.8 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_4944 -1.8 -3.6 Carbamoyltransferase compare
PP_t11 -1.8 -3.0 tRNA-Lys compare
PP_3300 -1.8 -6.6 Transcriptional regulator, tetR family compare
PP_3505 -1.8 -1.6 conserved protein of unknown function compare
PP_1783 -1.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_2907 -1.8 -1.8 DNA-binding response regulator compare
PP_0852 -1.8 -4.3 Transcriptional regulator, Cro/CI family compare
PP_0995 -1.7 -5.3 conserved membrane protein of unknown function compare
PP_4739 -1.7 -1.7 conserved protein of unknown function compare
PP_0484 -1.7 -5.6 transporter of an unknown substrate compare
PP_5155 -1.7 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0832 -1.7 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1629 -1.7 -5.9 Protein RecA compare
PP_5502 -1.7 -4.8 ribosome modulation factor compare
PP_0311 -1.7 -4.7 putative dimethylglycine dehydrogenase subunit compare
PP_4253 -1.7 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_1322 -1.7 -1.3 putative Lipoprotein compare
PP_5338 -1.6 -3.1 aspartate ammonia-lyase compare
PP_0082 -1.6 -4.8 tryptophan synthase alpha chain compare
PP_5014 -1.6 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4620 -1.6 -6.3 Fumarylacetoacetase compare
PP_1985 -1.6 -3.9 3-isopropylmalate dehydratase large subunit compare
PP_4546 -1.6 -3.8 ATP-dependent helicase HrpA compare
PP_3241 -1.6 -0.9 conserved exported protein of unknown function compare
PP_3603 -1.6 -5.7 Transcriptional regulator, GntR family compare
PP_1860 -1.6 -3.1 Organic hydroperoxide resistance transcriptional regulator compare
PP_4475 -1.6 -5.4 succinylglutamate desuccinylase compare
PP_4268 -1.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_5097 -1.6 -8.1 homoserine O-acetyltransferase compare
PP_4008 -1.6 -3.7 ATP-dependent serine protease compare
PP_t29 -1.6 -1.4 tRNA-Ala compare
PP_0083 -1.6 -4.8 tryptophan synthase beta chain compare
PP_0850 -1.6 -4.7 Dual-specificity RNA methyltransferase RlmN compare
PP_0058 -1.5 -7.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4824 -1.5 -4.8 Sensor histidine kinase/response regulator compare
PP_2806 -1.5 -3.7 Transcriptional regulator, TetR family compare
PP_4131 -1.5 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_2402 -1.5 -1.4 putative Sensor histidine kinase compare
PP_4329 -1.5 -1.8 FlhB domain protein compare
PP_1198 -1.5 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5322 -1.5 -3.6 putative metal ion transporter compare
PP_5508 -1.5 -1.0 conserved protein of unknown function compare
PP_0758 -1.5 -4.7 conserved protein of unknown function compare
PP_1318 -1.5 -3.1 Cytochrome b compare
PP_1679 -1.4 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1099 -1.4 -1.5 Cold shock protein CapB compare
PP_1226 -1.4 -3.4 pre-queuosine 0 synthase compare
PP_0855 -1.4 -2.1 conserved protein of unknown function compare
PP_0719 -1.4 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5294 -1.4 -3.9 Ribonuclease PH compare
PP_1663 -1.4 -7.0 conserved exported protein of unknown function compare
PP_0967 -1.4 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5028 -1.4 -3.1 proline iminopeptidase compare
PP_1428 -1.4 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_1764 -1.4 -1.3 Phosphoglycolate phosphatase 2 compare
PP_0048 -1.4 -1.1 conserved protein of unknown function compare
PP_0025 -1.4 -1.0 hypothetical protein compare
PP_1589 -1.4 -6.3 uridylyltransferase compare
PP_1367 -1.4 -5.2 formyltetrahydrofolate hydrolase compare
PP_3102 -1.3 -3.7 conserved protein of unknown function compare
PP_4517 -1.3 -1.3 conserved protein of unknown function compare
PP_1986 -1.3 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_3312 -1.3 -1.5 putative Heat shock protein compare
PP_0003 -1.3 -2.2 16S RNA methyltransferase compare
PP_2031 -1.3 -1.9 conserved protein of unknown function compare
PP_0312 -1.3 -3.9 electron transfer flavoprotein, alpha subunit compare
PP_1770 -1.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4892 -1.3 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4545 -1.3 -3.4 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_5128 -1.3 -6.7 Dihydroxy-acid dehydratase compare
PP_4129 -1.3 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2336 -1.3 -3.2 aconitate hydratase 1 compare
PP_5007 -1.3 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1097 -1.3 -0.9 Methionine--tRNA ligase compare
PP_0125 -1.3 -1.8 putative cytochrome c-type protein compare
PP_2348 -1.3 -3.7 Sensor histidine kinase compare
PP_0685 -1.3 -1.7 conserved protein of unknown function compare
PP_4238 -1.3 -1.5 conserved protein of unknown function compare
PP_2168 -1.3 -5.7 Transaldolase compare
PP_0966 -1.3 -5.9 Histidinol dehydrogenase compare
PP_5654 -1.3 -1.0 putative phosphotriesterase compare
PP_0164 -1.3 -3.3 conserved protein of unknown function compare
PP_4215 -1.2 -3.7 pyoverdine biosynthesis related protein compare
PP_5229 -1.2 -3.2 conserved protein of unknown function compare
PP_4124 -1.2 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_5571 -1.2 -1.1 conserved protein of unknown function compare
PP_4832 -1.2 -2.4 Precorrin-6x reductase compare
PP_5008 -1.2 -1.0 Poly granule-associated protein compare
PP_4829 -1.2 -1.6 putative precorrin-3B synthase compare
PP_4121 -1.2 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_4379 -1.2 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0274 -1.2 -0.8 putative transcriptional regulator containing HTH domain compare
PP_3999 -1.2 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0420 -1.2 -5.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0007 -1.2 -1.8 conserved hypothetical protein compare
PP_4890 -1.2 -2.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0434 -1.2 -2.7 Anhydro-N-acetylmuramic acid kinase compare
PP_0396 -1.2 -7.2 conserved protein of unknown function compare
PP_0417 -1.2 -8.2 Anthranilate synthase component 1 compare
PP_3580 -1.2 -1.4 conserved protein of unknown function compare
PP_5054 -1.2 -1.7 glutaredoxin 3 compare
PP_1238 -1.2 -3.9 putative Lipoprotein compare
PP_5216 -1.2 -1.1 exopolyphosphatase compare
PP_1268 -1.2 -1.4 putative HtrA suppressor protein sohA compare
PP_2581 -1.2 -0.8 conserved protein of unknown function compare
PP_1232 -1.2 -2.6 conserved exported protein of unknown function compare


Specific Phenotypes

For 17 genes in this experiment

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms