Experiment set52S621 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PP_0901 -6.9 -6.7 DNA-binding response regulator compare
PP_1460 -5.6 -6.7 putative Membrane protein compare
PP_0413 -5.0 -9.6 Polyamine ABC transporter, permease protein conserved
PP_0902 -4.9 -10.0 integral membrane sensor signal transduction histidine kinase compare
PP_0311 -4.9 -7.4 putative dimethylglycine dehydrogenase subunit compare
PP_0312 -4.5 -6.2 electron transfer flavoprotein, alpha subunit compare
PP_1015 -3.9 -7.1 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1201 -3.9 -7.0 conserved exported protein of unknown function compare
PP_1018 -3.9 -7.5 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0310 -3.6 -12.4 putative dimethylglycine dehydrogenase subunit compare
PP_1013 -3.6 -6.4 Sensor histidine kinase compare
PP_0414 -3.2 -5.1 Polyamine ABC transporter, permease protein compare
PP_1202 -3.2 -14.0 putative enzyme involved in modification of phospholipids conserved
PP_1019 -3.1 -9.8 carbohydrate-selective porin conserved
PP_1430 -3.0 -8.7 putative periplasmic serine endoprotease DegP-like compare
PP_1695 -2.9 -8.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1017 -2.9 -6.5 mannose/glucose ABC transporter, permease protein conserved
PP_1016 -2.6 -8.3 mannose/glucose ABC transporter, permease protein conserved
PP_0308 -2.5 -7.6 putative dipeptidase conserved
PP_2906 -2.2 -5.8 Sensor histidine kinase compare
PP_2711 -1.9 -6.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0325 -1.9 -10.9 sarcosine oxidase subunit alpha compare
PP_5026 -1.9 -7.2 Glucans biosynthesis protein G compare
PP_1367 -1.9 -5.3 formyltetrahydrofolate hydrolase compare
PP_0323 -1.8 -6.3 sarcosine oxidase subunit beta compare
PP_0324 -1.7 -6.3 sarcosine oxidase subunit delta compare
PP_2437 -1.4 -6.1 putative Acyl-CoA dehydrogenase compare
PP_3300 -1.3 -5.6 Transcriptional regulator, tetR family compare
PP_0904 -1.2 -5.3 InaA protein compare
PP_2679 +1.4 9.4 quinoprotein ethanol dehydrogenase compare
PP_2666 +4.6 5.7 conserved exported protein of unknown function compare
PP_2683 +7.5 11.8 putative sensory box histidine kinase/response regulator compare


Specific phenotypes for in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms