Experiment set52S620 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Genes with specific phenotypes:

  gene name fitness t score description  
PP_0901 -6.3 -6.1 DNA-binding response regulator compare
PP_0902 -5.1 -9.2 integral membrane sensor signal transduction histidine kinase compare
PP_1460 -5.1 -9.2 putative Membrane protein compare
PP_0311 -5.0 -6.8 putative dimethylglycine dehydrogenase subunit compare
PP_0413 -4.7 -9.6 Polyamine ABC transporter, permease protein conserved
PP_1018 -4.7 -6.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0312 -4.4 -6.0 electron transfer flavoprotein, alpha subunit compare
PP_1201 -4.2 -6.4 conserved exported protein of unknown function compare
PP_0310 -4.0 -11.4 putative dimethylglycine dehydrogenase subunit compare
PP_1015 -3.9 -6.9 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1013 -3.6 -6.0 Sensor histidine kinase compare
PP_1017 -3.6 -7.2 mannose/glucose ABC transporter, permease protein conserved
PP_1430 -3.4 -8.5 putative periplasmic serine endoprotease DegP-like compare
PP_1202 -3.2 -13.7 putative enzyme involved in modification of phospholipids conserved
PP_1016 -3.0 -9.4 mannose/glucose ABC transporter, permease protein conserved
PP_1695 -3.0 -8.4 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1019 -2.9 -9.3 carbohydrate-selective porin conserved
PP_0308 -2.6 -5.6 putative dipeptidase conserved
PP_2906 -2.1 -6.2 Sensor histidine kinase compare
PP_2711 -2.0 -5.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0324 -1.9 -7.1 sarcosine oxidase subunit delta compare
PP_0325 -1.8 -11.1 sarcosine oxidase subunit alpha compare
PP_1238 -1.7 -5.3 putative Lipoprotein compare
PP_3300 -1.6 -7.2 Transcriptional regulator, tetR family compare
PP_0323 -1.5 -6.4 sarcosine oxidase subunit beta compare
PP_5026 -1.5 -5.6 Glucans biosynthesis protein G compare
PP_2304 -1.4 -5.6 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5025 -1.3 -5.4 Glucans biosynthesis glucosyltransferase H compare
PP_2679 +1.3 9.2 quinoprotein ethanol dehydrogenase compare
PP_2666 +4.6 5.8 conserved exported protein of unknown function compare
PP_2683 +7.5 11.9 putative sensory box histidine kinase/response regulator compare


Specific phenotypes for in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms