Experiment set52S620 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_0313 -6.3 -4.3 putative electron transfer flavoprotein beta subunit compare
PP_0901 -6.3 -6.1 DNA-binding response regulator compare
PP_0184 -5.5 -3.8 Argininosuccinate lyase compare
PP_0902 -5.1 -9.2 integral membrane sensor signal transduction histidine kinase compare
PP_1460 -5.1 -9.2 putative Membrane protein compare
PP_1088 -5.0 -4.9 Argininosuccinate synthase compare
PP_0311 -5.0 -6.8 putative dimethylglycine dehydrogenase subunit compare
PP_2645 -4.8 -10.3 magnesium transporter, ATP-dependent compare
PP_0413 -4.7 -9.6 Polyamine ABC transporter, permease protein conserved
PP_1018 -4.7 -6.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_4143 -4.6 -3.2 conserved protein of unknown function compare
PP_3821 -4.5 -8.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0312 -4.4 -6.0 electron transfer flavoprotein, alpha subunit compare
PP_3511 -4.3 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_1201 -4.2 -6.4 conserved exported protein of unknown function compare
PP_0310 -4.0 -11.4 putative dimethylglycine dehydrogenase subunit compare
PP_5289 -4.0 -3.9 Acetylglutamate kinase compare
PP_1012 -3.9 -5.3 DNA-binding response regulator compare
PP_1015 -3.9 -6.9 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_5185 -3.8 -4.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -3.8 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_5098 -3.7 -7.5 methionine biosynthesis protein MetW compare
PP_4532 -3.6 -3.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1013 -3.6 -6.0 Sensor histidine kinase compare
PP_0760 -3.6 -4.3 conserved membrane protein of unknown function compare
PP_2646 -3.6 -4.2 conserved protein of unknown function compare
PP_1017 -3.6 -7.2 mannose/glucose ABC transporter, permease protein conserved
PP_5055 -3.6 -4.9 Sulfurtransferase compare
PP_4058 -3.6 -5.4 1,4-alpha-glucan branching enzyme compare
PP_4678 -3.6 -13.2 Ketol-acid reductoisomerase compare
PP_5097 -3.5 -11.3 homoserine O-acetyltransferase compare
PP_4696 -3.5 -5.3 Nitrogen regulation protein NR(I) compare
PP_5145 -3.4 -18.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1430 -3.4 -8.5 putative periplasmic serine endoprotease DegP-like compare
PP_0420 -3.4 -10.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5128 -3.4 -8.1 Dihydroxy-acid dehydratase compare
PP_1995 -3.3 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0414 -3.3 -3.7 Polyamine ABC transporter, permease protein compare
PP_5155 -3.3 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2168 -3.2 -11.9 Transaldolase compare
PP_2322 -3.2 -2.2 Major outer membrane lipoprotein compare
PP_1202 -3.2 -13.7 putative enzyme involved in modification of phospholipids conserved
PP_5084 -3.2 -7.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0290 -3.1 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -3.1 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_0292 -3.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -3.1 -4.2 tryptophan synthase alpha chain compare
PP_0125 -3.1 -3.6 putative cytochrome c-type protein compare
PP_0083 -3.1 -4.7 tryptophan synthase beta chain compare
PP_0421 -3.1 -7.1 Anthranilate phosphoribosyltransferase compare
PP_0289 -3.0 -6.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -3.0 -14.6 Anthranilate synthase component 1 compare
PP_4680 -3.0 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -3.0 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1016 -3.0 -9.4 mannose/glucose ABC transporter, permease protein conserved
PP_1695 -3.0 -8.4 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0938 -3.0 -10.5 conserved protein of unknown function compare
PP_1216 -3.0 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5053 -3.0 -7.3 Protein-export protein SecB compare
PP_1428 -3.0 -4.5 Sigma factor AlgU negative regulatory protein compare
PP_1019 -2.9 -9.3 carbohydrate-selective porin conserved
PP_4909 -2.9 -7.1 phosphoserine phosphatase compare
PP_4943 -2.9 -2.0 putative Glycosyl transferase compare
PP_0966 -2.9 -9.6 Histidinol dehydrogenase compare
PP_4789 -2.8 -4.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1623 -2.8 -2.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0422 -2.8 -5.2 Indole-3-glycerol phosphate synthase compare
PP_5014 -2.7 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1719 -2.6 -4.7 Tail-specific protease prc compare
PP_0872 -2.6 -6.2 Peptide chain release factor 3 compare
PP_1011 -2.6 -8.5 glucokinase compare
PP_t10 -2.6 -2.3 tRNA-Pro compare
PP_5322 -2.6 -3.0 putative metal ion transporter compare
PP_0308 -2.6 -5.6 putative dipeptidase conserved
PP_0888 -2.6 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5338 -2.5 -3.0 aspartate ammonia-lyase compare
PP_2348 -2.5 -5.3 Sensor histidine kinase compare
PP_0965 -2.5 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1898 -2.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 -2.5 -1.7 conserved protein of unknown function compare
PP_4836 -2.5 -2.9 conserved exported protein of unknown function compare
PP_0293 -2.4 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0834 -2.4 -2.6 Sec translocation complex subunit YajC compare
PP_5015 -2.4 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4699 -2.4 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4944 -2.4 -2.8 Carbamoyltransferase compare
PP_0995 -2.4 -4.8 conserved membrane protein of unknown function compare
PP_1986 -2.4 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_2145 -2.4 -1.6 beta-N-acetylglucosaminidase compare
PP_1994 -2.3 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_1988 -2.3 -7.9 3-isopropylmalate dehydrogenase compare
PP_1325 -2.3 -7.2 putative lipoprotein compare
PP_5706 -2.3 -1.6 Sec translocation complex - SecG subunit compare
PP_2088 -2.3 -3.4 RNA polymerase sigma factor SigX compare
PP_2433 -2.3 -2.9 conserved protein of unknown function compare
PP_0393 -2.3 -3.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1186 -2.3 -2.9 two component system DNA-binding transcriptional dual regulator compare
PP_3649 -2.3 -3.0 Transcriptional regulator, GntR family compare
PP_5076 -2.3 -13.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_2070 -2.2 -2.3 Transcriptional regulator, AraC family compare
PP_0484 -2.2 -4.9 transporter of an unknown substrate compare
PP_2379 -2.2 -3.9 putative cytochrome oxidase biogenesis protein compare
PP_0855 -2.2 -2.9 conserved protein of unknown function compare
PP_2320 -2.2 -7.1 conserved exported protein of unknown function compare
PP_5350 -2.2 -2.1 Transcriptional regulator, RpiR family compare
PP_0852 -2.2 -3.9 Transcriptional regulator, Cro/CI family compare
PP_4679 -2.1 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2906 -2.1 -6.2 Sensor histidine kinase compare
PP_0326 -2.1 -3.2 sarcosine oxidase subunit gamma compare
PP_1629 -2.1 -6.2 Protein RecA compare
PP_5075 -2.1 -9.5 glutamate synthase (NADPH) beta subunit compare
PP_5218 -2.1 -4.4 DedA family protein compare
PP_4120 -2.1 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_4505 -2.1 -4.6 Sensor histidine kinase compare
PP_4892 -2.1 -1.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4890 -2.1 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4126 -2.1 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4891 -2.1 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0164 -2.0 -2.4 conserved protein of unknown function compare
PP_3603 -2.0 -5.5 Transcriptional regulator, GntR family compare
PP_4263 -2.0 -1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4722 -2.0 -3.5 Transcription elongation factor GreA compare
PP_4591 -2.0 -4.0 Ribonuclease D compare
PP_2711 -2.0 -5.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1778 -2.0 -5.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1906 -2.0 -3.5 ribosomal large subunit pseudouridine synthase C compare
PP_4874 -2.0 -1.3 50S ribosomal protein L9 compare
PP_1215 -2.0 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0951 -2.0 -6.1 Ribosome hibernation promoting factor compare
PP_4122 -1.9 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0401 -1.9 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_1022 -1.9 -5.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4124 -1.9 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_4004 -1.9 -2.9 DNA translocase FtsK compare
PP_4129 -1.9 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4342 -1.9 -1.3 flagellar synthesis regulator, putative ATPase compare
PP_0691 -1.9 -1.3 Glutamate 5-kinase compare
PP_0127 -1.9 -1.3 Thiol:disulfide interchange protein compare
PP_1079 -1.9 -4.4 Ornithine carbamoyltransferase compare
PP_2402 -1.9 -1.3 putative Sensor histidine kinase compare
PP_0324 -1.9 -7.1 sarcosine oxidase subunit delta compare
PP_4941 -1.9 -3.1 conserved exported protein of unknown function compare
PP_2820 -1.9 -2.6 HTH-type transcriptional regulator nfxB compare
PP_5310 -1.8 -5.7 junction-specific ATP-dependent DNA helicase compare
PP_4785 -1.8 -3.0 conserved exported protein of unknown function compare
PP_1110 -1.8 -4.5 serine acetyltransferase compare
PP_1912 -1.8 -4.0 Phosphate acyltransferase compare
PP_1355 -1.8 -5.0 Muropeptide permease AmpG compare
PP_4131 -1.8 -1.2 NADH-quinone oxidoreductase subunit N compare
PP_0948 -1.8 -1.6 Phosphocarrier protein HPr compare
PP_0325 -1.8 -11.1 sarcosine oxidase subunit alpha compare
PP_4734 -1.8 -6.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_5054 -1.8 -2.2 glutaredoxin 3 compare
PP_2378 -1.7 -1.6 Fe/S biogenesis protein NfuA compare
PP_0119 -1.7 -3.3 putative zinc uptake regulation protein ZUR compare
PP_1731 -1.7 -3.4 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1238 -1.7 -5.3 putative Lipoprotein compare
PP_0291 -1.7 -2.3 conserved protein of unknown function compare
PP_1318 -1.7 -2.8 Cytochrome b compare
PP_4265 -1.7 -1.1 DNA-binding transcriptional dual regulator compare
PP_4008 -1.7 -2.9 ATP-dependent serine protease compare
PP_2136 -1.7 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0022 -1.6 -1.3 hypothetical protein compare
PP_5095 -1.6 -1.5 pyrroline-5-carboxylate reductase compare
PP_2677 -1.6 -2.4 conserved exported protein of unknown function compare
PP_4121 -1.6 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_2107 -1.6 -1.9 conserved protein of unknown function compare
PP_0949 -1.6 -5.0 putative ATP-binding protein UPF0042 compare
PP_4546 -1.6 -3.2 ATP-dependent helicase HrpA compare
PP_0984 -1.6 -3.1 conserved membrane protein of unknown function compare
PP_3300 -1.6 -7.2 Transcriptional regulator, tetR family compare
PP_2889 -1.6 -5.2 putative Transmembrane regulator PrtR compare
PP_3506 -1.6 -3.2 Magnesium chelatase, subunit ChII compare
PP_2122 -1.6 -3.7 molybdenum cofactor biosynthesis protein B compare
PP_4482 -1.6 -3.1 Transcriptional regulator, AraC family compare
PP_4642 -1.5 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_0368 -1.5 -11.1 putative Acyl-CoA dehydrogenase compare
PP_1663 -1.5 -6.7 conserved exported protein of unknown function compare
PP_1764 -1.5 -1.0 Phosphoglycolate phosphatase 2 compare
PP_0794 -1.5 -3.5 1-phosphofructokinase monomer compare
PP_0323 -1.5 -6.4 sarcosine oxidase subunit beta compare
PP_0809 -1.5 -2.5 disulfide bond formation protein B compare
PP_1598 -1.5 -3.9 regulatory intramembrane protein RIP zinc protease compare
PP_1232 -1.5 -2.6 conserved exported protein of unknown function compare
PP_5035 -1.5 -3.8 Histidine utilization repressor compare
PP_3307 -1.5 -2.0 conserved protein of unknown function compare
PP_4993 -1.5 -2.0 Glutathione synthetase compare
PP_4826 -1.5 -4.3 Precorrin-3B C17-methyltransferase compare
PP_0123 -1.5 -6.4 DNA polymerase I, 5 compare
PP_5026 -1.5 -5.6 Glucans biosynthesis protein G compare
PP_0007 -1.5 -2.0 conserved hypothetical protein compare
PP_0035 -1.5 -2.5 putative bactoprenol-linked glycose transferase compare
PP_5748 -1.5 -1.1 cytochrome c heme lyase subunit compare
PP_1099 -1.5 -1.8 Cold shock protein CapB compare
PP_0406 -1.5 -1.7 Nucleotidyltransferase family protein compare
PP_4261 -1.5 -2.2 cation-transporting P-type ATPase compare
PP_4880 -1.4 -4.1 exoribonuclease R compare
PP_4989 -1.4 -3.1 Protein PilJ compare
PP_0405 -1.4 -4.2 conserved protein of unknown function compare
PP_5337 -1.4 -3.8 LysR family transcriptional regulator compare


Specific Phenotypes

For 31 genes in this experiment

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms