Experiment set52S619 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Putida_ML5a, pot, at 24 (C), (Solid)
By: Marta Torres on 1-Jul-24

Specific Phenotypes

For 17 genes in this experiment

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem #Specific
Terminal cytochrome d ubiquinol oxidases 2
Terminal cytochrome oxidases 2
Acetyl-CoA fermentation to Butyrate 1
Polyamine Metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
aerobic respiration III (alternative oxidase pathway) 3 3 1
glycine betaine degradation III 7 7 2