Experiment set52S619 for Pseudomonas putida KT2440

Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Putida_ML5a, pot, at 24 (C), (Solid)
By: Marta Torres on 1-Jul-24

Specific Phenotypes

For 18 genes in this experiment

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
Terminal cytochrome d ubiquinol oxidases	2
Terminal cytochrome oxidases	2
Acetyl-CoA fermentation to Butyrate	1
One-carbon metabolism by tetrahydropterines	1
Polyamine Metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glyoxylate and dicarboxylate metabolism
• One carbon pool by folate

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
aerobic respiration III (alternative oxidase pathway)	3	3	1
glycine betaine degradation III	7	7	2
formaldehyde oxidation VII (THF pathway)	4	4	1
folate transformations I	13	9	1
purine nucleobases degradation I (anaerobic)	15	6	1
purine nucleobases degradation II (anaerobic)	24	16	1