Experiment set52S596 for Pseudomonas putida KT2440

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_1428 -5.7 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_2645 -5.6 -3.9 magnesium transporter, ATP-dependent compare
PP_0184 -5.2 -3.6 Argininosuccinate lyase compare
PP_1995 -4.5 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -4.3 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -4.3 -5.8 Indole-3-glycerol phosphate synthase compare
PP_2646 -4.2 -3.7 conserved protein of unknown function compare
PP_4909 -4.2 -5.0 phosphoserine phosphatase compare
PP_0417 -4.1 -16.6 Anthranilate synthase component 1 compare
PP_5289 -4.0 -4.7 Acetylglutamate kinase compare
PP_1088 -3.9 -12.1 Argininosuccinate synthase compare
PP_3511 -3.9 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_5217 -3.8 -13.0 Polyphosphate kinase compare
PP_5155 -3.7 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2088 -3.6 -3.5 RNA polymerase sigma factor SigX compare
PP_4143 -3.6 -4.9 conserved protein of unknown function compare
PP_4680 -3.6 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0949 -3.5 -3.4 putative ATP-binding protein UPF0042 compare
PP_4943 -3.5 -2.4 putative Glycosyl transferase compare
PP_4722 -3.5 -2.4 Transcription elongation factor GreA compare
PP_5098 -3.3 -7.6 methionine biosynthesis protein MetW compare
PP_0420 -3.3 -10.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -3.2 -12.1 homoserine O-acetyltransferase compare
PP_3484 -3.2 -5.4 Response regulator receiver protein compare
PP_4268 -3.2 -1.6 nucleoid-associated broad specificity regulator compare
PP_0951 -3.2 -8.3 Ribosome hibernation promoting factor compare
PP_5128 -3.2 -9.7 Dihydroxy-acid dehydratase compare
PP_0421 -3.2 -9.2 Anthranilate phosphoribosyltransferase compare
PP_4679 -3.1 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -3.1 -12.4 Ketol-acid reductoisomerase compare
PP_1224 -3.0 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_4058 -3.0 -8.5 1,4-alpha-glucan branching enzyme compare
PP_0395 -2.9 -13.6 putative type IV piliation protein compare
PP_0396 -2.9 -9.0 conserved protein of unknown function compare
PP_0082 -2.9 -3.9 tryptophan synthase alpha chain compare
PP_0083 -2.8 -5.6 tryptophan synthase beta chain compare
PP_1985 -2.7 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0397 -2.6 -13.6 protein kinase compare
PP_1860 -2.6 -4.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_4004 -2.6 -3.5 DNA translocase FtsK compare
PP_0292 -2.6 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4890 -2.6 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_2903 -2.6 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2168 -2.5 -11.7 Transaldolase compare
PP_1269 -2.5 -1.5 Universal stress protein family compare
PP_4122 -2.5 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2378 -2.5 -1.7 Fe/S biogenesis protein NfuA compare
PP_0289 -2.5 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -2.4 -5.8 O-succinylhomoserine sulfhydrylase compare
PP_4098 -2.4 -1.7 UvrABC system protein C compare
PP_0290 -2.4 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5705 -2.4 -2.2 protein of unknown function compare
PP_1778 -2.4 -6.2 Lipopolysaccharide ABC export system, permease protein compare
PP_0965 -2.4 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2322 -2.3 -4.1 Major outer membrane lipoprotein compare
PP_0966 -2.3 -8.2 Histidinol dehydrogenase compare
PP_5045 -2.3 -3.5 tRNA sulfurtransferase compare
PP_4008 -2.3 -2.2 ATP-dependent serine protease compare
PP_1198 -2.3 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4124 -2.3 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_4936 -2.3 -6.7 O-antigen polymerase compare
PP_5502 -2.3 -4.2 ribosome modulation factor compare
PP_5090 -2.2 -2.6 putative cell division protein compare
PP_3840 -2.2 -1.7 conserved protein of unknown function compare
PP_3902 -2.2 -2.8 conserved protein of unknown function compare
PP_1988 -2.2 -6.3 3-isopropylmalate dehydrogenase compare
PP_5084 -2.2 -9.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1022 -2.2 -5.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4938 -2.2 -9.0 putative Glycosyl transferase compare
PP_0185 -2.2 -7.8 Positive alginate biosynthesis regulatory protein compare
PP_1779 -2.2 -5.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4131 -2.1 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_3649 -2.1 -3.5 Transcriptional regulator, GntR family compare
PP_1906 -2.1 -3.3 ribosomal large subunit pseudouridine synthase C compare
PP_1912 -2.1 -5.3 Phosphate acyltransferase compare
PP_5248 -2.1 -1.2 putative hydrolase compare
PP_1733 -2.1 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4696 -2.1 -4.9 Nitrogen regulation protein NR(I) compare
PP_4940 -2.0 -6.8 Putative glycosyltransferase compare
PP_0967 -2.0 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -2.0 -2.8 Ornithine carbamoyltransferase compare
PP_1237 -2.0 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0547 -1.9 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0293 -1.9 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4126 -1.9 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0832 -1.9 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4880 -1.9 -3.2 exoribonuclease R compare
PP_1215 -1.9 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1430 -1.9 -7.4 putative periplasmic serine endoprotease DegP-like compare
PP_4874 -1.9 -1.3 50S ribosomal protein L9 compare
PP_0406 -1.9 -1.8 Nucleotidyltransferase family protein compare
PP_1629 -1.8 -6.3 Protein RecA compare
PP_4342 -1.8 -1.3 flagellar synthesis regulator, putative ATPase compare
PP_4994 -1.8 -1.8 conserved protein of unknown function compare
PP_2520 -1.8 -2.9 conserved protein of unknown function compare
PP_0003 -1.8 -2.7 16S RNA methyltransferase compare
PP_4532 -1.8 -3.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4789 -1.8 -3.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0593 -1.7 -1.2 putative ribosome-binding factor compare
PP_5232 -1.7 -2.4 conserved protein of unknown function compare
PP_1325 -1.7 -5.9 putative lipoprotein compare
PP_4505 -1.7 -4.6 Sensor histidine kinase compare
PP_1679 -1.7 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1763 -1.7 -2.3 putative oxidoreductase compare
PP_1632 -1.7 -1.2 conserved protein of unknown function compare
PP_4129 -1.7 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0789 -1.7 -3.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0164 -1.7 -2.5 conserved protein of unknown function compare
PP_5015 -1.6 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1683 -1.6 -2.5 Transcriptional regulator, MarR family compare
PP_4720 -1.6 -1.7 putative RNA binding protein compare
PP_2370 -1.6 -2.2 conserved protein of unknown function compare
PP_0126 -1.6 -2.6 Cytochrome c4 compare
PP_1025 -1.6 -7.1 2-isopropylmalate synthase compare
PP_5198 -1.6 -3.3 conserved protein of unknown function compare
PP_4785 -1.6 -4.2 conserved exported protein of unknown function compare
PP_0123 -1.6 -7.0 DNA polymerase I, 5 compare
PP_4247 -1.6 -1.5 Exonuclease compare
PP_0801 -1.6 -1.2 conserved exported protein of unknown function compare
PP_3821 -1.6 -7.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4918 -1.6 -5.9 conserved protein of unknown function compare
PP_1214 -1.5 -2.3 putative transcriptional regulatory protein compare
PP_4009 -1.5 -3.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_4910 -1.5 -2.4 conserved protein of unknown function compare
PP_0435 -1.5 -2.5 Peptidase, M23/M37 family compare
PP_0063 -1.5 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4480 -1.5 -6.6 arginine N-succinyltransferase, subunit alpha compare
PP_1598 -1.5 -4.7 regulatory intramembrane protein RIP zinc protease compare
PP_4271 -1.5 -1.0 conserved protein of unknown function compare
PP_1048 -1.5 -2.3 putative protein secretion protein for export compare
PP_4130 -1.5 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4593 -1.5 -1.5 conserved protein of unknown function compare
PP_4546 -1.5 -2.9 ATP-dependent helicase HrpA compare
PP_4760 -1.5 -3.2 Alcohol dehydrogenase, zinc-containing compare
PP_4517 -1.5 -1.7 conserved protein of unknown function compare
PP_4263 -1.5 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4121 -1.5 -3.6 NADH-quinone oxidoreductase subunit C/D compare
PP_1055 -1.5 -1.3 Type II secretion pathway protein GspN compare
PP_5346 -1.5 -4.9 pyruvate carboxylase subunit B compare
PP_2217 -1.5 -2.3 enoyl-CoA hydratase compare
PP_5230 -1.5 -3.3 Tyrosine recombinase XerC compare
PP_1752 -1.4 -5.3 conserved protein of unknown function compare
PP_1734 -1.4 -1.4 Probable septum site-determining protein MinC compare
PP_2862 -1.4 -5.0 Undecaprenyl-diphosphatase compare
PP_0691 -1.4 -1.0 Glutamate 5-kinase compare
PP_2330 -1.4 -3.2 conserved protein of unknown function compare
PP_5350 -1.4 -2.1 Transcriptional regulator, RpiR family compare
PP_1226 -1.4 -4.1 pre-queuosine 0 synthase compare
PP_2929 -1.4 -6.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_t29 -1.4 -1.4 tRNA-Ala compare
PP_0401 -1.4 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_1716 -1.4 -2.1 Transcriptional regulator, Cro/CI family compare
PP_5075 -1.4 -6.6 glutamate synthase (NADPH) beta subunit compare
PP_4320 -1.4 -3.6 cytochrome c-type biogenesis protein compare
PP_1318 -1.4 -3.6 Cytochrome b compare
PP_4937 -1.4 -3.0 toluene tolerance protein compare
PP_2402 -1.4 -1.9 putative Sensor histidine kinase compare
PP_2328 -1.4 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_0414 -1.3 -3.2 Polyamine ABC transporter, permease protein compare
PP_0872 -1.3 -4.9 Peptide chain release factor 3 compare
PP_4941 -1.3 -3.0 conserved exported protein of unknown function compare
PP_0984 -1.3 -2.1 conserved membrane protein of unknown function compare
PP_0846 -1.3 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_2846 -1.3 -3.5 urease accessory protein compare
PP_5014 -1.3 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4482 -1.3 -3.0 Transcriptional regulator, AraC family compare
PP_3307 -1.3 -1.9 conserved protein of unknown function compare
PP_4787 -1.3 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4066 -1.3 -3.2 methylglutaconyl-CoA hydratase compare
PP_4060 -1.3 -7.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1999 -1.3 -1.3 membrane protein required for colicin V production compare
PP_1232 -1.3 -2.3 conserved exported protein of unknown function compare
PP_1217 -1.3 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4892 -1.3 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3808 -1.2 -1.4 Antibiotic synthesis protein MbtH compare
PP_2928 -1.2 -4.9 Saccharopine dehydrogenase compare
PP_3312 -1.2 -1.1 putative Heat shock protein compare
PP_4879 -1.2 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1268 -1.2 -1.7 putative HtrA suppressor protein sohA compare
PP_2475 -1.2 -3.3 Transcriptional regulator, TetR family compare
PP_5347 -1.2 -5.9 pyruvate carboxylase subunit A compare
PP_5295 -1.2 -1.7 conserved protein of unknown function compare
PP_t12 -1.2 -0.9 tRNA-Thr compare
PP_0628 -1.2 -3.0 conserved protein of unknown function compare
PP_4591 -1.2 -3.3 Ribonuclease D compare
PP_2976 -1.2 -1.1 putative transposase compare
PP_5076 -1.2 -6.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_0834 -1.2 -1.5 Sec translocation complex subunit YajC compare
PP_2299 -1.2 -2.0 Trigger factor compare
PP_4120 -1.2 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_0850 -1.2 -4.2 Dual-specificity RNA methyltransferase RlmN compare
PP_2675 -1.2 -2.8 Cytochrome c-type protein compare
PP_3833 -1.2 -3.3 Response regulator compare
PP_1114 -1.2 -3.3 SEC-C domain protein compare
PP_5633 -1.2 -3.9 conserved protein of unknown function compare
PP_4475 -1.2 -4.0 succinylglutamate desuccinylase compare
PP_0735 -1.2 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_1176 -1.2 -1.5 conserved protein of unknown function compare
PP_1562 -1.2 -1.4 putative Phage terminase, small subunit compare
PP_5303 -1.2 -2.0 aminoacrylate/iminopropionate hydrolase/deaminase compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms