Experiment set52S595 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_2646 -5.4 -3.6 conserved protein of unknown function compare
PP_3484 -5.4 -3.7 Response regulator receiver protein compare
PP_2645 -5.3 -7.3 magnesium transporter, ATP-dependent compare
PP_5289 -5.0 -3.5 Acetylglutamate kinase compare
PP_1088 -5.0 -8.3 Argininosuccinate synthase compare
PP_5145 -4.9 -15.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0184 -4.7 -6.4 Argininosuccinate lyase compare
PP_5185 -4.6 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0948 -4.6 -1.5 Phosphocarrier protein HPr compare
PP_1995 -4.5 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4143 -4.4 -4.2 conserved protein of unknown function compare
PP_0417 -4.2 -16.4 Anthranilate synthase component 1 compare
PP_4909 -4.2 -5.7 phosphoserine phosphatase compare
PP_0951 -4.2 -10.5 Ribosome hibernation promoting factor compare
PP_3511 -3.9 -9.4 Branched-chain-amino-acid aminotransferase compare
PP_5155 -3.9 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2088 -3.8 -3.7 RNA polymerase sigma factor SigX compare
PP_0395 -3.7 -13.5 putative type IV piliation protein compare
PP_1079 -3.6 -6.5 Ornithine carbamoyltransferase compare
PP_0949 -3.6 -3.5 putative ATP-binding protein UPF0042 compare
PP_1988 -3.5 -9.0 3-isopropylmalate dehydrogenase compare
PP_0396 -3.5 -14.2 conserved protein of unknown function compare
PP_0420 -3.4 -7.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -3.4 -5.6 Indole-3-glycerol phosphate synthase compare
PP_0421 -3.3 -9.2 Anthranilate phosphoribosyltransferase compare
PP_0293 -3.3 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4722 -3.2 -3.1 Transcription elongation factor GreA compare
PP_5128 -3.2 -9.8 Dihydroxy-acid dehydratase compare
PP_1268 -3.2 -2.2 putative HtrA suppressor protein sohA compare
PP_1198 -3.2 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0397 -3.1 -15.6 protein kinase compare
PP_5045 -3.1 -3.0 tRNA sulfurtransferase compare
PP_4678 -3.1 -14.1 Ketol-acid reductoisomerase compare
PP_4122 -3.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5098 -3.0 -6.1 methionine biosynthesis protein MetW compare
PP_1428 -2.9 -5.1 Sigma factor AlgU negative regulatory protein compare
PP_4890 -2.9 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -2.9 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0547 -2.9 -6.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1906 -2.8 -5.0 ribosomal large subunit pseudouridine synthase C compare
PP_0083 -2.8 -5.7 tryptophan synthase beta chain compare
PP_1912 -2.8 -5.3 Phosphate acyltransferase compare
PP_5217 -2.8 -12.7 Polyphosphate kinase compare
PP_0965 -2.8 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -2.8 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -2.7 -7.5 Histidinol dehydrogenase compare
PP_4532 -2.7 -3.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5097 -2.7 -12.2 homoserine O-acetyltransferase compare
PP_1985 -2.6 -6.2 3-isopropylmalate dehydratase large subunit compare
PP_4680 -2.6 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4058 -2.4 -9.0 1,4-alpha-glucan branching enzyme compare
PP_2322 -2.3 -4.1 Major outer membrane lipoprotein compare
PP_5014 -2.3 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_3649 -2.3 -2.7 Transcriptional regulator, GntR family compare
PP_0082 -2.3 -4.3 tryptophan synthase alpha chain compare
PP_1986 -2.2 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_0289 -2.2 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4253 -2.2 -3.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4124 -2.2 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_4940 -2.2 -9.1 Putative glycosyltransferase compare
PP_2217 -2.2 -3.1 enoyl-CoA hydratase compare
PP_1779 -2.2 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2001 -2.2 -7.3 O-succinylhomoserine sulfhydrylase compare
PP_1224 -2.1 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_0290 -2.1 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0292 -2.1 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1025 -2.1 -7.2 2-isopropylmalate synthase compare
PP_5346 -2.1 -7.0 pyruvate carboxylase subunit B compare
PP_1468 -2.1 -2.8 Tyrosine recombinase XerD compare
PP_1362 -2.1 -4.1 pyruvate kinase II compare
PP_1319 -2.0 -3.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4130 -2.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1702 -2.0 -4.1 Recombination-associated protein RdgC compare
PP_4008 -2.0 -3.0 ATP-dependent serine protease compare
PP_4121 -2.0 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1099 -2.0 -2.5 Cold shock protein CapB compare
PP_5303 -1.9 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4131 -1.9 -3.6 NADH-quinone oxidoreductase subunit N compare
PP_4696 -1.9 -6.0 Nitrogen regulation protein NR(I) compare
PP_2107 -1.9 -1.6 conserved protein of unknown function compare
PP_1778 -1.9 -5.8 Lipopolysaccharide ABC export system, permease protein compare
PP_4874 -1.9 -1.2 50S ribosomal protein L9 compare
PP_2402 -1.9 -2.2 putative Sensor histidine kinase compare
PP_0401 -1.9 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_5095 -1.9 -1.2 pyrroline-5-carboxylate reductase compare
PP_4517 -1.8 -2.2 conserved protein of unknown function compare
PP_4593 -1.8 -1.7 conserved protein of unknown function compare
PP_4262 -1.8 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1623 -1.8 -3.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_4342 -1.8 -1.2 flagellar synthesis regulator, putative ATPase compare
PP_4943 -1.8 -2.2 putative Glycosyl transferase compare
PP_5232 -1.8 -2.1 conserved protein of unknown function compare
PP_1679 -1.8 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2145 -1.8 -2.6 beta-N-acetylglucosaminidase compare
PP_0872 -1.7 -6.3 Peptide chain release factor 3 compare
PP_0123 -1.7 -7.5 DNA polymerase I, 5 compare
PP_4337 -1.7 -6.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4936 -1.7 -6.5 O-antigen polymerase compare
PP_4938 -1.7 -8.7 putative Glycosyl transferase compare
PP_2414 -1.7 -2.4 conserved exported protein of unknown function compare
PP_1632 -1.7 -1.7 conserved protein of unknown function compare
PP_2327 -1.7 -5.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4988 -1.7 -4.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1860 -1.7 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_4098 -1.7 -2.2 UvrABC system protein C compare
PP_4994 -1.7 -1.6 conserved protein of unknown function compare
PP_2378 -1.6 -2.2 Fe/S biogenesis protein NfuA compare
PP_4941 -1.6 -3.4 conserved exported protein of unknown function compare
PP_1318 -1.6 -3.7 Cytochrome b compare
PP_1232 -1.6 -1.6 conserved exported protein of unknown function compare
PP_1430 -1.6 -6.3 putative periplasmic serine endoprotease DegP-like compare
PP_0152 -1.6 -2.4 conserved exported protein of unknown function compare
PP_2510 -1.6 -1.8 conserved protein of unknown function compare
PP_4642 -1.6 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_0340 -1.6 -7.0 Glutamate-ammonia-ligase adenylyltransferase compare
PP_3346 -1.6 -2.8 Nickel transporter ATP-binding protein compare
PP_0406 -1.6 -1.8 Nucleotidyltransferase family protein compare
PP_1020 -1.6 -2.6 putative glucose-6-phosphate 1-epimerase compare
PP_0984 -1.6 -3.4 conserved membrane protein of unknown function compare
PP_4944 -1.6 -2.9 Carbamoyltransferase compare
PP_4126 -1.6 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_1764 -1.6 -2.1 Phosphoglycolate phosphatase 2 compare
PP_0434 -1.5 -4.0 Anhydro-N-acetylmuramic acid kinase compare
PP_4726 -1.5 -2.2 Chaperone protein DnaJ compare
PP_4379 -1.5 -4.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1673 -1.5 -4.8 cobyrinate a,c-diamide synthase compare
PP_4824 -1.5 -4.4 Sensor histidine kinase/response regulator compare
PP_4880 -1.5 -4.3 exoribonuclease R compare
PP_5SB -1.5 -2.1 5S ribosomal RNA compare
PP_1328 -1.5 -2.4 Protein MraZ compare
PP_2168 -1.5 -8.9 Transaldolase compare
PP_3821 -1.5 -7.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0959 -1.5 -1.8 phospholipid ABC transporter compare
PP_4296 -1.5 -1.5 conserved exported protein of unknown function compare
PP_2862 -1.5 -4.6 Undecaprenyl-diphosphatase compare
PP_2328 -1.4 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_0691 -1.4 -1.0 Glutamate 5-kinase compare
PP_0435 -1.4 -2.8 Peptidase, M23/M37 family compare
PP_0003 -1.4 -2.8 16S RNA methyltransferase compare
PP_0960 -1.4 -4.8 phospholipid ABC transporter binding protein compare
PP_5084 -1.4 -6.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4892 -1.4 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_t10 -1.4 -1.4 tRNA-Pro compare
PP_1317 -1.4 -2.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1074 -1.4 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0566 -1.4 -0.9 translation-related factor compare
PP_4480 -1.4 -6.4 arginine N-succinyltransferase, subunit alpha compare
PP_4997 -1.4 -1.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4875 -1.3 -3.8 conserved membrane protein of unknown function compare
PP_5230 -1.3 -2.8 Tyrosine recombinase XerC compare
PP_4891 -1.3 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_t12 -1.3 -0.9 tRNA-Thr compare
PP_5502 -1.3 -2.5 ribosome modulation factor compare
PP_4785 -1.3 -3.4 conserved exported protein of unknown function compare
PP_1664 -1.3 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0846 -1.3 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_4811 -1.3 -3.4 Gamma-glutamyl phosphate reductase compare
PP_2929 -1.3 -6.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4268 -1.3 -1.3 nucleoid-associated broad specificity regulator compare
PP_1022 -1.3 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5146 -1.3 -4.7 RNA pyrophosphohydrolase compare
PP_2633 -1.3 -1.6 conserved protein of unknown function compare
PP_4701 -1.3 -0.8 glucose-6-phosphate isomerase compare
PP_2898 -1.3 -1.7 conserved exported protein of unknown function compare
PP_1215 -1.2 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4009 -1.2 -2.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_2903 -1.2 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0834 -1.2 -1.4 Sec translocation complex subunit YajC compare
PP_3808 -1.2 -1.2 Antibiotic synthesis protein MbtH compare
PP_4120 -1.2 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_1733 -1.2 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4129 -1.2 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5348 -1.2 -5.3 Transcriptional regulator, LysR family compare
PP_4158 -1.2 -3.9 sensor protein compare
PP_0185 -1.2 -6.2 Positive alginate biosynthesis regulatory protein compare
PP_4004 -1.2 -2.6 DNA translocase FtsK compare
PP_5331 -1.2 -1.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1208 -1.2 -2.2 conserved protein of unknown function, SlyX family compare
PP_2299 -1.2 -2.4 Trigger factor compare
PP_4286 -1.2 -4.7 allantoinase compare
PP_4789 -1.2 -2.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2472 -1.2 -4.3 putative transcriptional regulator, MerR family compare
PP_4597 -1.2 -3.3 Cyclic pyranopterin monophosphate synthase compare
PP_4247 -1.2 -1.2 Exonuclease compare
PP_2348 -1.2 -3.2 Sensor histidine kinase compare
PP_0001 -1.1 -1.4 probable chromosome-partitioning protein compare
PP_1734 -1.1 -1.3 Probable septum site-determining protein MinC compare
PP_1678 -1.1 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1325 -1.1 -3.9 putative lipoprotein compare
PP_0194 -1.1 -3.7 Transcriptional regulatory protein AlgP compare
PP_0274 -1.1 -1.0 putative transcriptional regulator containing HTH domain compare
PP_4918 -1.1 -4.2 conserved protein of unknown function compare
PP_5327 -1.1 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_5350 -1.1 -2.1 Transcriptional regulator, RpiR family compare
PP_5652 -1.1 -2.0 conserved protein of unknown function, phage origin compare
PP_3833 -1.1 -2.2 Response regulator compare
PP_3447 -1.1 -0.9 conserved membrane protein of unknown function compare
PP_1629 -1.1 -4.7 Protein RecA compare
PP_4320 -1.1 -3.5 cytochrome c-type biogenesis protein compare
PP_4917 -1.1 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms