Experiment set52S593 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_2646 -5.9 -4.0 conserved protein of unknown function compare
PP_2645 -5.8 -7.9 magnesium transporter, ATP-dependent compare
PP_0184 -4.8 -7.4 Argininosuccinate lyase compare
PP_3484 -4.2 -6.9 Response regulator receiver protein compare
PP_5185 -3.9 -7.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4909 -3.7 -7.8 phosphoserine phosphatase compare
PP_3511 -3.7 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_1088 -3.6 -14.3 Argininosuccinate synthase compare
PP_5098 -3.6 -8.9 methionine biosynthesis protein MetW compare
PP_5155 -3.4 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0293 -3.3 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4680 -3.3 -14.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.3 -10.1 Dihydroxy-acid dehydratase compare
PP_5289 -3.2 -6.1 Acetylglutamate kinase compare
PP_4726 -3.2 -3.1 Chaperone protein DnaJ compare
PP_4679 -3.1 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -3.1 -9.2 Anthranilate phosphoribosyltransferase compare
PP_4678 -3.0 -14.4 Ketol-acid reductoisomerase compare
PP_4122 -3.0 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1079 -3.0 -6.1 Ornithine carbamoyltransferase compare
PP_1988 -3.0 -10.3 3-isopropylmalate dehydrogenase compare
PP_1906 -2.9 -5.5 ribosomal large subunit pseudouridine synthase C compare
PP_4696 -2.8 -6.8 Nitrogen regulation protein NR(I) compare
PP_4058 -2.8 -10.3 1,4-alpha-glucan branching enzyme compare
PP_2402 -2.8 -2.7 putative Sensor histidine kinase compare
PP_1214 -2.8 -3.7 putative transcriptional regulatory protein compare
PP_2001 -2.8 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_0420 -2.7 -11.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -2.7 -15.3 Anthranilate synthase component 1 compare
PP_1985 -2.6 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_2378 -2.6 -2.5 Fe/S biogenesis protein NfuA compare
PP_4008 -2.6 -3.5 ATP-dependent serine protease compare
PP_0290 -2.5 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -2.5 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_3649 -2.5 -3.4 Transcriptional regulator, GntR family compare
PP_0393 -2.4 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4004 -2.4 -4.1 DNA translocase FtsK compare
PP_0292 -2.4 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5095 -2.3 -1.6 pyrroline-5-carboxylate reductase compare
PP_0422 -2.3 -4.8 Indole-3-glycerol phosphate synthase compare
PP_5097 -2.3 -9.4 homoserine O-acetyltransferase compare
PP_4342 -2.2 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_4066 -2.2 -4.6 methylglutaconyl-CoA hydratase compare
PP_1097 -2.2 -1.6 Methionine--tRNA ligase compare
PP_0083 -2.2 -6.4 tryptophan synthase beta chain compare
PP_1995 -2.2 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -2.1 -5.2 tryptophan synthase alpha chain compare
PP_5045 -2.1 -4.1 tRNA sulfurtransferase compare
PP_0289 -2.1 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4880 -2.0 -6.0 exoribonuclease R compare
PP_1912 -2.0 -5.1 Phosphate acyltransferase compare
PP_1215 -2.0 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4121 -2.0 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4124 -2.0 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_5014 -1.9 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_1022 -1.9 -6.5 glucose 6-phosphate-1-dehydrogenase compare
PP_0691 -1.9 -1.3 Glutamate 5-kinase compare
PP_5303 -1.9 -4.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4722 -1.9 -4.3 Transcription elongation factor GreA compare
PP_0872 -1.9 -7.0 Peptide chain release factor 3 compare
PP_5217 -1.8 -8.1 Polyphosphate kinase compare
PP_4131 -1.8 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_5346 -1.8 -7.9 pyruvate carboxylase subunit B compare
PP_1232 -1.8 -3.1 conserved exported protein of unknown function compare
PP_4130 -1.8 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0965 -1.8 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1268 -1.8 -3.0 putative HtrA suppressor protein sohA compare
PP_0967 -1.7 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5644 -1.7 -2.4 conserved membrane protein of unknown function compare
PP_4532 -1.7 -2.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2929 -1.6 -7.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4251 -1.6 -2.7 cytochrome c oxidase subunit, cbb3-type compare
PP_4261 -1.6 -3.5 cation-transporting P-type ATPase compare
PP_1994 -1.6 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4263 -1.6 -2.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4890 -1.6 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_3365 -1.5 -1.4 Acetolactate synthase compare
PP_1198 -1.5 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1664 -1.5 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4941 -1.5 -4.1 conserved exported protein of unknown function compare
PP_2388 -1.5 -2.8 Transporter, LysE family compare
PP_4129 -1.5 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5311 -1.5 -6.1 putative signal transduction protein compare
PP_1224 -1.5 -5.1 periplasmic subunit of the TolQRA transport system compare
PP_4824 -1.5 -5.5 Sensor histidine kinase/response regulator compare
PP_0966 -1.5 -7.9 Histidinol dehydrogenase compare
PP_0547 -1.4 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4265 -1.4 -1.0 DNA-binding transcriptional dual regulator compare
PP_0434 -1.4 -4.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4120 -1.4 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_4994 -1.4 -2.3 conserved protein of unknown function compare
PP_5331 -1.4 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4961 -1.4 -2.1 putative Lipoprotein compare
PP_2720 -1.4 -1.7 conserved protein of unknown function compare
PP_5475 -1.4 -1.5 conserved protein of unknown function compare
PP_5347 -1.4 -7.3 pyruvate carboxylase subunit A compare
PP_1217 -1.4 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0406 -1.4 -2.2 Nucleotidyltransferase family protein compare
PP_1764 -1.4 -2.3 Phosphoglycolate phosphatase 2 compare
PP_1734 -1.4 -2.2 Probable septum site-determining protein MinC compare
PP_5198 -1.4 -3.4 conserved protein of unknown function compare
PP_4126 -1.4 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_2433 -1.3 -2.1 conserved protein of unknown function compare
PP_1233 -1.3 -3.7 sulfurtransferase compare
PP_2152 -1.3 -2.7 glycerophosphoryl diester phosphodiesterase compare
PP_5168 -1.3 -2.5 sulfate/thiosulfate import ATP-binding protein compare
PP_2145 -1.3 -2.8 beta-N-acetylglucosaminidase compare
PP_0164 -1.3 -3.4 conserved protein of unknown function compare
PP_0984 -1.3 -2.4 conserved membrane protein of unknown function compare
PP_2348 -1.3 -5.2 Sensor histidine kinase compare
PP_0001 -1.3 -1.9 probable chromosome-partitioning protein compare
PP_5230 -1.3 -3.3 Tyrosine recombinase XerC compare
PP_2390 -1.3 -5.0 Transcriptional regulator, LysR family compare
PP_2322 -1.3 -2.9 Major outer membrane lipoprotein compare
PP_0856 -1.3 -0.9 conserved lipoprotein of unknown function compare
PP_1702 -1.3 -4.0 Recombination-associated protein RdgC compare
PP_4993 -1.3 -2.3 Glutathione synthetase compare
PP_t10 -1.2 -1.7 tRNA-Pro compare
PP_1309 -1.2 -5.4 conserved exported protein of unknown function compare
PP_3506 -1.2 -2.8 Magnesium chelatase, subunit ChII compare
PP_0949 -1.2 -4.7 putative ATP-binding protein UPF0042 compare
PP_1237 -1.2 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5348 -1.2 -5.8 Transcriptional regulator, LysR family compare
PP_1216 -1.2 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0775 -1.2 -2.1 conserved protein of unknown function compare
PP_1783 -1.2 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4891 -1.2 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3447 -1.1 -1.2 conserved membrane protein of unknown function compare
PP_4546 -1.1 -3.0 ATP-dependent helicase HrpA compare
PP_3999 -1.1 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4811 -1.1 -3.2 Gamma-glutamyl phosphate reductase compare
PP_2299 -1.1 -3.5 Trigger factor compare
PP_0832 -1.1 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5337 -1.1 -3.7 LysR family transcriptional regulator compare
PP_2328 -1.1 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_4475 -1.1 -3.8 succinylglutamate desuccinylase compare
PP_0719 -1.1 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2903 -1.1 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0951 -1.1 -5.5 Ribosome hibernation promoting factor compare
PP_0065 -1.1 -2.8 NAD-binding component of TrK potassium transporter compare
PP_4143 -1.1 -2.8 conserved protein of unknown function compare
PP_4695 -1.1 -5.9 Sensory box histidine kinase compare
PP_1362 -1.1 -3.4 pyruvate kinase II compare
PP_5075 -1.1 -7.3 glutamate synthase (NADPH) beta subunit compare
PP_5508 -1.1 -1.3 conserved protein of unknown function compare
PP_1898 -1.1 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_5456 -1.1 -1.2 conserved protein of unknown function compare
PP_4785 -1.0 -3.5 conserved exported protein of unknown function compare
PP_1778 -1.0 -4.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1318 -1.0 -3.4 Cytochrome b compare
PP_4260 -1.0 -3.0 conserved protein of unknown function compare
PP_1860 -1.0 -2.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_0827 -1.0 -2.3 putative phosphonate transport system permease protein PtxC compare
PP_2475 -1.0 -2.9 Transcriptional regulator, TetR family compare
PP_2379 -1.0 -3.2 putative cytochrome oxidase biogenesis protein compare
PP_1428 -1.0 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_4591 -1.0 -3.2 Ribonuclease D compare
PP_2168 -1.0 -6.1 Transaldolase compare
PP_4766 -1.0 -4.2 ATP-dependent RNA helicase compare
PP_1048 -1.0 -2.2 putative protein secretion protein for export compare
PP_2371 -1.0 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1319 -1.0 -3.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_t29 -1.0 -1.3 tRNA-Ala compare
PP_4379 -1.0 -3.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3320 -1.0 -2.5 conserved protein of unknown function compare
PP_4699 -1.0 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1062 -1.0 -2.5 MutT/nudix family protein compare
PP_0362 -1.0 -6.1 Biotin synthase compare
PP_4943 -1.0 -1.6 putative Glycosyl transferase compare
PP_3819 -1.0 -4.7 glutathione reductase (NADPH) compare
PP_2181 -1.0 -3.4 Transcriptional regulator, Cro/CI family compare
PP_2137 -1.0 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_2884 -1.0 -4.7 XRE family transcriptional regulator compare
PP_1733 -0.9 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0395 -0.9 -6.9 putative type IV piliation protein compare
PP_1598 -0.9 -3.4 regulatory intramembrane protein RIP zinc protease compare
PP_5502 -0.9 -4.7 ribosome modulation factor compare
PP_2028 -0.9 -2.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5054 -0.9 -1.7 glutaredoxin 3 compare
PP_1763 -0.9 -2.3 putative oxidoreductase compare
PP_5015 -0.9 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1679 -0.9 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4102 -0.9 -2.7 conserved protein of unknown function compare
PP_1322 -0.9 -1.4 putative Lipoprotein compare
PP_4776 -0.9 -5.3 AsnC family transcriptional regulator compare
PP_3603 -0.9 -3.9 Transcriptional regulator, GntR family compare
PP_1328 -0.9 -1.8 Protein MraZ compare
PP_1011 -0.9 -4.6 glucokinase compare
PP_0153 -0.9 -1.4 hypothetical protein compare
PP_5483 -0.9 -1.2 conserved protein of unknown function compare
PP_0834 -0.9 -1.5 Sec translocation complex subunit YajC compare
PP_1808 -0.9 -2.4 glucose-6-phosphate isomerase compare
PP_5267 -0.9 -1.2 putative cytochrome c5 compare
PP_2928 -0.9 -3.6 Saccharopine dehydrogenase compare
PP_4383 -0.9 -3.9 Flagellar P-ring protein compare
PP_1018 -0.9 -3.8 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1208 -0.9 -1.7 conserved protein of unknown function, SlyX family compare
PP_2643 -0.9 -2.3 aromatic acid chemoreceptor compare
PP_1528 -0.9 -1.2 conserved protein of unknown function compare
PP_3043 -0.9 -2.1 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms