Experiment set52S591 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_2646 -5.9 -3.8 conserved protein of unknown function compare
PP_2645 -5.7 -7.9 magnesium transporter, ATP-dependent compare
PP_4909 -3.7 -8.2 phosphoserine phosphatase compare
PP_4058 -3.3 -10.1 1,4-alpha-glucan branching enzyme compare
PP_5155 -3.2 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2402 -3.2 -2.2 putative Sensor histidine kinase compare
PP_0184 -3.1 -8.3 Argininosuccinate lyase compare
PP_4696 -3.0 -7.3 Nitrogen regulation protein NR(I) compare
PP_2378 -2.9 -2.0 Fe/S biogenesis protein NfuA compare
PP_5185 -2.9 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5217 -2.9 -12.2 Polyphosphate kinase compare
PP_0293 -2.8 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5289 -2.8 -4.9 Acetylglutamate kinase compare
PP_4482 -2.7 -4.4 Transcriptional regulator, AraC family compare
PP_4943 -2.7 -3.0 putative Glycosyl transferase compare
PP_2388 -2.7 -5.2 Transporter, LysE family compare
PP_4008 -2.6 -3.6 ATP-dependent serine protease compare
PP_1088 -2.6 -12.7 Argininosuccinate synthase compare
PP_4124 -2.5 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_3484 -2.5 -4.5 Response regulator receiver protein compare
PP_4722 -2.5 -4.7 Transcription elongation factor GreA compare
PP_4126 -2.4 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4936 -2.4 -9.7 O-antigen polymerase compare
PP_1860 -2.4 -4.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_0872 -2.3 -7.7 Peptide chain release factor 3 compare
PP_3649 -2.3 -3.7 Transcriptional regulator, GntR family compare
PP_3903 -2.3 -3.0 conserved protein of unknown function compare
PP_4143 -2.2 -4.6 conserved protein of unknown function compare
PP_4131 -2.2 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_0393 -2.2 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0083 -2.1 -6.2 tryptophan synthase beta chain compare
PP_4880 -2.1 -5.8 exoribonuclease R compare
PP_1268 -2.1 -2.5 putative HtrA suppressor protein sohA compare
PP_1898 -2.1 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0003 -2.1 -3.1 16S RNA methyltransferase compare
PP_1995 -2.1 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4004 -2.0 -3.5 DNA translocase FtsK compare
PP_4941 -2.0 -4.3 conserved exported protein of unknown function compare
PP_4122 -2.0 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1214 -2.0 -2.8 putative transcriptional regulatory protein compare
PP_3511 -2.0 -7.3 Branched-chain-amino-acid aminotransferase compare
PP_1468 -2.0 -2.7 Tyrosine recombinase XerD compare
PP_1224 -2.0 -5.9 periplasmic subunit of the TolQRA transport system compare
PP_4517 -2.0 -2.9 conserved protein of unknown function compare
PP_4938 -2.0 -7.5 putative Glycosyl transferase compare
PP_1232 -2.0 -2.6 conserved exported protein of unknown function compare
PP_0691 -1.9 -1.3 Glutamate 5-kinase compare
PP_4679 -1.9 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2088 -1.9 -2.7 RNA polymerase sigma factor SigX compare
PP_0290 -1.9 -6.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -1.9 -5.0 tryptophan synthase alpha chain compare
PP_4940 -1.8 -8.1 Putative glycosyltransferase compare
PP_0406 -1.8 -2.4 Nucleotidyltransferase family protein compare
PP_4944 -1.8 -3.3 Carbamoyltransferase compare
PP_3821 -1.8 -9.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0048 -1.8 -1.4 conserved protein of unknown function compare
PP_1994 -1.8 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4680 -1.8 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5230 -1.8 -4.0 Tyrosine recombinase XerC compare
PP_5128 -1.8 -6.9 Dihydroxy-acid dehydratase compare
PP_1216 -1.7 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1912 -1.7 -4.3 Phosphate acyltransferase compare
PP_1664 -1.7 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_2929 -1.7 -7.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5311 -1.7 -7.7 putative signal transduction protein compare
PP_4343 -1.7 -5.0 Flagellar biosynthesis protein FlhF compare
PP_1237 -1.6 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1764 -1.6 -2.8 Phosphoglycolate phosphatase 2 compare
PP_4342 -1.6 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_4678 -1.6 -9.1 Ketol-acid reductoisomerase compare
PP_2928 -1.6 -6.5 Saccharopine dehydrogenase compare
PP_4136 -1.6 -1.4 Transcriptional regulator, LuxR family compare
PP_1702 -1.6 -4.2 Recombination-associated protein RdgC compare
PP_5321 -1.5 -6.7 two-component system sensory histidine kinase compare
PP_0916 -1.5 -2.5 Amino acid transporter LysE compare
PP_4129 -1.5 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5114 -1.5 -2.1 putative adenine methyltransferase compare
PP_1362 -1.5 -3.8 pyruvate kinase II compare
PP_0420 -1.5 -7.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4261 -1.5 -3.5 cation-transporting P-type ATPase compare
PP_4766 -1.5 -5.5 ATP-dependent RNA helicase compare
PP_2903 -1.5 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3926 -1.4 -1.4 short-chain dehydrogenase compare
PP_4475 -1.4 -5.8 succinylglutamate desuccinylase compare
PP_2336 -1.4 -3.3 aconitate hydratase 1 compare
PP_0232 -1.4 -1.1 ATP-binding taurine transporter subunit compare
PP_4532 -1.4 -2.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0850 -1.4 -4.0 Dual-specificity RNA methyltransferase RlmN compare
PP_4121 -1.4 -4.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5095 -1.4 -1.1 pyrroline-5-carboxylate reductase compare
PP_1783 -1.4 -1.3 dTDP-glucose pyrophosphorylase compare
PP_0366 -1.4 -6.0 dethiobiotin synthetase compare
PP_4902 -1.4 -0.9 Oligoribonuclease compare
PP_4060 -1.4 -9.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0164 -1.4 -3.8 conserved protein of unknown function compare
PP_2520 -1.4 -3.5 conserved protein of unknown function compare
PP_5508 -1.4 -1.3 conserved protein of unknown function compare
PP_2847 -1.4 -1.3 Urease accessory protein UreJ compare
PP_3999 -1.4 -3.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1906 -1.4 -2.9 ribosomal large subunit pseudouridine synthase C compare
PP_4824 -1.4 -5.4 Sensor histidine kinase/response regulator compare
PP_5347 -1.3 -7.0 pyruvate carboxylase subunit A compare
PP_4253 -1.3 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_1198 -1.3 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1269 -1.3 -1.2 Universal stress protein family compare
PP_4263 -1.3 -2.4 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2214 -1.3 -4.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5322 -1.3 -4.5 putative metal ion transporter compare
PP_0832 -1.3 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0417 -1.3 -7.8 Anthranilate synthase component 1 compare
PP_1318 -1.3 -4.0 Cytochrome b compare
PP_5502 -1.3 -4.8 ribosome modulation factor compare
PP_5331 -1.3 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4120 -1.3 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_5090 -1.3 -1.8 putative cell division protein compare
PP_4726 -1.3 -2.4 Chaperone protein DnaJ compare
PP_4811 -1.2 -3.8 Gamma-glutamyl phosphate reductase compare
PP_4268 -1.2 -1.3 nucleoid-associated broad specificity regulator compare
PP_2168 -1.2 -7.4 Transaldolase compare
PP_0001 -1.2 -1.0 probable chromosome-partitioning protein compare
PP_0421 -1.2 -4.2 Anthranilate phosphoribosyltransferase compare
PP_1215 -1.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0504 -1.2 -3.9 Outer membrane protein OprG compare
PP_1986 -1.2 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_2299 -1.2 -3.1 Trigger factor compare
PP_5054 -1.2 -1.6 glutaredoxin 3 compare
PP_4917 -1.2 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5310 -1.2 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_0856 -1.2 -1.1 conserved lipoprotein of unknown function compare
PP_4993 -1.2 -2.4 Glutathione synthetase compare
PP_5483 -1.2 -1.5 conserved protein of unknown function compare
PP_4828 -1.2 -1.0 Precorrin-8X methylmutase compare
PP_0422 -1.2 -2.9 Indole-3-glycerol phosphate synthase compare
PP_0292 -1.2 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0794 -1.1 -3.3 1-phosphofructokinase monomer compare
PP_t11 -1.1 -2.1 tRNA-Lys compare
PP_4130 -1.1 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1679 -1.1 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0362 -1.1 -6.4 Biotin synthase compare
PP_0289 -1.1 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5475 -1.1 -1.4 conserved protein of unknown function compare
PP_1428 -1.1 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_0125 -1.1 -1.9 putative cytochrome c-type protein compare
PP_0719 -1.1 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3245 -1.1 -1.6 conserved protein of unknown function compare
PP_4789 -1.1 -3.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2475 -1.1 -3.9 Transcriptional regulator, TetR family compare
PP_0685 -1.1 -1.9 conserved protein of unknown function compare
PP_0984 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_5098 -1.1 -3.3 methionine biosynthesis protein MetW compare
PP_0757 -1.1 -3.4 conserved protein of unknown function compare
PP_0735 -1.1 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_2433 -1.1 -2.0 conserved protein of unknown function compare
PP_3234 -1.0 -2.5 Heat shock protein, HSP20 family compare
PP_5337 -1.0 -3.8 LysR family transcriptional regulator compare
PP_1779 -1.0 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1926 -1.0 -3.3 putative phosphotyrosine-protein phosphatase compare
PP_3307 -1.0 -1.7 conserved protein of unknown function compare
PP_4961 -1.0 -1.5 putative Lipoprotein compare
PP_4546 -1.0 -3.0 ATP-dependent helicase HrpA compare
PP_5519 -1.0 -2.5 conserved protein of unknown function of phage origin compare
PP_2001 -1.0 -5.5 O-succinylhomoserine sulfhydrylase compare
PP_0967 -1.0 -5.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4681 -1.0 -1.9 conserved protein of unknown function compare
PP_0435 -1.0 -3.3 Peptidase, M23/M37 family compare
PP_5350 -1.0 -2.4 Transcriptional regulator, RpiR family compare
PP_1824 -1.0 -1.3 Smr domain protein compare
PP_3460 -1.0 -1.9 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1752 -1.0 -3.1 conserved protein of unknown function compare
PP_5198 -1.0 -1.8 conserved protein of unknown function compare
PP_1319 -1.0 -2.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1410 -1.0 -0.9 conserved protein of unknown function compare
PP_4994 -1.0 -1.7 conserved protein of unknown function compare
PP_1676 -1.0 -4.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3098 -1.0 -0.8 conserved protein of unknown function compare
PP_0951 -1.0 -4.2 Ribosome hibernation promoting factor compare
PP_2932 -1.0 -3.4 Amidase family protein compare
PP_0240 -1.0 -2.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0513 -1.0 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1097 -1.0 -1.0 Methionine--tRNA ligase compare
PP_4355 -1.0 -1.4 flagellar export apparatus subunit compare
PP_3819 -1.0 -4.3 glutathione reductase (NADPH) compare
PP_4891 -1.0 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2330 -1.0 -3.1 conserved protein of unknown function compare
PP_3102 -1.0 -2.3 conserved protein of unknown function compare
PP_1317 -1.0 -2.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1164 -1.0 -1.6 Transcriptional regulator, LysR family compare
PP_3105 -0.9 -1.3 conserved membrane protein of unknown function compare
PP_1589 -0.9 -4.4 uridylyltransferase compare
PP_5045 -0.9 -1.7 tRNA sulfurtransferase compare
PP_0965 -0.9 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -0.9 -6.1 homoserine O-acetyltransferase compare
PP_0007 -0.9 -1.6 conserved hypothetical protein compare
PP_2681 -0.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_1985 -0.9 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_1294 -0.9 -2.1 molybdopterin synthase large subunit compare
PP_2530 -0.9 -1.6 conserved protein of unknown function compare
PP_4699 -0.9 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_t13 -0.9 -2.3 tRNA-Lys compare
PP_4199 -0.9 -0.7 putative Lipoprotein compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms