Experiment set52S588 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_2645 -5.5 -9.2 magnesium transporter, ATP-dependent compare
PP_5155 -4.7 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3484 -4.7 -6.4 Response regulator receiver protein compare
PP_4909 -4.5 -6.2 phosphoserine phosphatase compare
PP_0184 -4.5 -8.1 Argininosuccinate lyase compare
PP_5289 -4.4 -6.0 Acetylglutamate kinase compare
PP_2646 -4.0 -3.4 conserved protein of unknown function compare
PP_1986 -3.7 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_1988 -3.7 -9.8 3-isopropylmalate dehydrogenase compare
PP_3511 -3.7 -9.7 Branched-chain-amino-acid aminotransferase compare
PP_4679 -3.7 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2088 -3.7 -4.3 RNA polymerase sigma factor SigX compare
PP_5098 -3.6 -7.0 methionine biosynthesis protein MetW compare
PP_0420 -3.4 -12.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0083 -3.3 -6.4 tryptophan synthase beta chain compare
PP_4680 -3.3 -14.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1912 -3.3 -6.2 Phosphate acyltransferase compare
PP_1268 -3.2 -3.1 putative HtrA suppressor protein sohA compare
PP_0082 -3.2 -4.9 tryptophan synthase alpha chain compare
PP_1985 -3.2 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_2322 -3.2 -4.3 Major outer membrane lipoprotein compare
PP_2402 -3.2 -2.2 putative Sensor histidine kinase compare
PP_4678 -3.1 -15.8 Ketol-acid reductoisomerase compare
PP_5303 -3.0 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1224 -3.0 -6.2 periplasmic subunit of the TolQRA transport system compare
PP_4122 -3.0 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4696 -2.9 -6.7 Nitrogen regulation protein NR(I) compare
PP_1088 -2.9 -11.7 Argininosuccinate synthase compare
PP_5097 -2.9 -12.0 homoserine O-acetyltransferase compare
PP_4058 -2.9 -10.2 1,4-alpha-glucan branching enzyme compare
PP_5217 -2.9 -10.5 Polyphosphate kinase compare
PP_1995 -2.7 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2001 -2.7 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_0834 -2.7 -3.1 Sec translocation complex subunit YajC compare
PP_2903 -2.7 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4938 -2.7 -10.1 putative Glycosyl transferase compare
PP_4722 -2.6 -4.5 Transcription elongation factor GreA compare
PP_5185 -2.5 -6.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0949 -2.5 -6.5 putative ATP-binding protein UPF0042 compare
PP_1022 -2.4 -7.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0417 -2.4 -14.1 Anthranilate synthase component 1 compare
PP_4008 -2.4 -4.2 ATP-dependent serine protease compare
PP_5095 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
PP_1872 -2.4 -9.7 glutamate-pyruvate aminotransferase compare
PP_5128 -2.4 -5.9 Dihydroxy-acid dehydratase compare
PP_2378 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
PP_0293 -2.3 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5483 -2.3 -2.5 conserved protein of unknown function compare
PP_4124 -2.3 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_0292 -2.3 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4994 -2.3 -2.2 conserved protein of unknown function compare
PP_1906 -2.2 -4.5 ribosomal large subunit pseudouridine synthase C compare
PP_4121 -2.2 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1097 -2.2 -1.5 Methionine--tRNA ligase compare
PP_0421 -2.2 -9.3 Anthranilate phosphoribosyltransferase compare
PP_5508 -2.2 -1.7 conserved protein of unknown function compare
PP_4941 -2.2 -3.9 conserved exported protein of unknown function compare
PP_1733 -2.2 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4004 -2.1 -4.0 DNA translocase FtsK compare
PP_1214 -2.1 -3.0 putative transcriptional regulatory protein compare
PP_3649 -2.1 -3.7 Transcriptional regulator, GntR family compare
PP_0164 -2.1 -3.2 conserved protein of unknown function compare
PP_0422 -2.1 -3.1 Indole-3-glycerol phosphate synthase compare
PP_4342 -2.1 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_1054 -2.0 -3.0 Type II secretion pathway protein XcpZ compare
PP_0393 -2.0 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5045 -2.0 -4.2 tRNA sulfurtransferase compare
PP_5001 -2.0 -3.2 protease HslVU, ATPase component compare
PP_0872 -1.9 -6.2 Peptide chain release factor 3 compare
PP_4726 -1.9 -2.5 Chaperone protein DnaJ compare
PP_4880 -1.9 -5.1 exoribonuclease R compare
PP_0691 -1.9 -1.3 Glutamate 5-kinase compare
PP_1232 -1.9 -2.6 conserved exported protein of unknown function compare
PP_4824 -1.9 -5.6 Sensor histidine kinase/response regulator compare
PP_0435 -1.9 -3.6 Peptidase, M23/M37 family compare
PP_0846 -1.8 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_1994 -1.8 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_1589 -1.8 -6.9 uridylyltransferase compare
PP_4936 -1.8 -4.5 O-antigen polymerase compare
PP_4143 -1.8 -3.1 conserved protein of unknown function compare
PP_3821 -1.7 -9.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5346 -1.7 -6.5 pyruvate carboxylase subunit B compare
PP_4785 -1.7 -4.7 conserved exported protein of unknown function compare
PP_2414 -1.7 -3.0 conserved exported protein of unknown function compare
PP_5311 -1.7 -7.5 putative signal transduction protein compare
PP_3105 -1.7 -2.9 conserved membrane protein of unknown function compare
PP_4268 -1.7 -1.6 nucleoid-associated broad specificity regulator compare
PP_1734 -1.7 -2.2 Probable septum site-determining protein MinC compare
PP_4944 -1.7 -3.3 Carbamoyltransferase compare
PP_4129 -1.7 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1362 -1.7 -4.0 pyruvate kinase II compare
PP_4354 -1.6 -2.5 flagellar export apparatus subunit compare
PP_4131 -1.6 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_1702 -1.6 -4.4 Recombination-associated protein RdgC compare
PP_0963 -1.6 -3.0 putative BolA family protein compare
PP_1860 -1.6 -3.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_1319 -1.6 -3.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1237 -1.6 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4789 -1.6 -3.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1216 -1.6 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0290 -1.6 -4.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5347 -1.6 -7.9 pyruvate carboxylase subunit A compare
PP_5054 -1.6 -2.1 glutaredoxin 3 compare
PP_0289 -1.5 -5.6 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -1.5 -5.3 Ornithine carbamoyltransferase compare
PP_0951 -1.5 -7.7 Ribosome hibernation promoting factor compare
PP_5248 -1.5 -1.6 putative hydrolase compare
PP_1764 -1.5 -2.6 Phosphoglycolate phosphatase 2 compare
PP_1099 -1.5 -2.3 Cold shock protein CapB compare
PP_4738 -1.5 -2.8 conserved exported protein of unknown function compare
PP_1898 -1.5 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1269 -1.5 -1.4 Universal stress protein family compare
PP_4261 -1.5 -3.5 cation-transporting P-type ATPase compare
PP_5310 -1.5 -5.7 junction-specific ATP-dependent DNA helicase compare
PP_4940 -1.5 -5.1 Putative glycosyltransferase compare
PP_4517 -1.4 -2.6 conserved protein of unknown function compare
PP_0965 -1.4 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1731 -1.4 -3.6 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4828 -1.4 -1.2 Precorrin-8X methylmutase compare
PP_0291 -1.4 -2.7 conserved protein of unknown function compare
PP_4902 -1.4 -0.9 Oligoribonuclease compare
PP_0065 -1.4 -3.3 NAD-binding component of TrK potassium transporter compare
PP_3924 -1.4 -2.9 conserved protein of unknown function compare
PP_3198 -1.4 -2.1 Ferredoxin, 2Fe-2S compare
PP_4766 -1.4 -4.3 ATP-dependent RNA helicase compare
PP_2433 -1.4 -1.7 conserved protein of unknown function compare
PP_4066 -1.4 -3.6 methylglutaconyl-CoA hydratase compare
PP_2388 -1.4 -3.3 Transporter, LysE family compare
PP_0366 -1.4 -5.2 dethiobiotin synthetase compare
PP_4481 -1.4 -4.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4478 -1.4 -6.5 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1752 -1.3 -5.5 conserved protein of unknown function compare
PP_3027 -1.3 -3.7 conserved protein of unknown function compare
PP_5075 -1.3 -8.0 glutamate synthase (NADPH) beta subunit compare
PP_0127 -1.3 -2.5 Thiol:disulfide interchange protein compare
PP_3312 -1.3 -1.6 putative Heat shock protein compare
PP_0856 -1.3 -0.9 conserved lipoprotein of unknown function compare
PP_5350 -1.3 -2.5 Transcriptional regulator, RpiR family compare
PP_0504 -1.3 -3.8 Outer membrane protein OprG compare
PP_0547 -1.3 -4.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0984 -1.3 -2.7 conserved membrane protein of unknown function compare
PP_1025 -1.3 -4.4 2-isopropylmalate synthase compare
PP_5337 -1.3 -4.3 LysR family transcriptional regulator compare
PP_1186 -1.3 -2.3 two component system DNA-binding transcriptional dual regulator compare
PP_2145 -1.3 -2.6 beta-N-acetylglucosaminidase compare
PP_1664 -1.3 -2.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1783 -1.3 -1.2 dTDP-glucose pyrophosphorylase compare
PP_1513 -1.3 -2.6 Ribosomal RNA small subunit methyltransferase J compare
PP_4286 -1.3 -4.0 allantoinase compare
PP_5051 -1.3 -2.6 conserved protein of unknown function compare
PP_4130 -1.3 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1779 -1.3 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5008 -1.3 -1.0 Poly granule-associated protein compare
PP_5028 -1.2 -3.1 proline iminopeptidase compare
PP_5327 -1.2 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_0967 -1.2 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5230 -1.2 -2.9 Tyrosine recombinase XerC compare
PP_4891 -1.2 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1679 -1.2 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2168 -1.2 -7.1 Transaldolase compare
PP_0003 -1.2 -3.0 16S RNA methyltransferase compare
PP_5456 -1.2 -1.7 conserved protein of unknown function compare
PP_4120 -1.2 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_5502 -1.2 -6.0 ribosome modulation factor compare
PP_1020 -1.2 -2.5 putative glucose-6-phosphate 1-epimerase compare
PP_4892 -1.2 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2371 -1.2 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_3121 -1.2 -2.8 transcriptional regulator, LysR family compare
PP_2214 -1.2 -3.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0362 -1.2 -6.5 Biotin synthase compare
PP_5000 -1.2 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4697 -1.2 -3.2 poly(A) polymerase compare
PP_2700 -1.2 -3.6 AhpC/TSA family protein compare
PP_2328 -1.2 -4.2 Phosphoadenosine phosphosulfate reductase compare
PP_4379 -1.2 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4875 -1.2 -3.1 conserved membrane protein of unknown function compare
PP_5279 -1.2 -2.8 conserved protein of unknown function compare
PP_4045 -1.2 -1.6 conserved protein of unknown function compare
PP_5717 -1.2 -1.8 conserved protein of unknown function compare
PP_0960 -1.2 -4.2 phospholipid ABC transporter binding protein compare
PP_4475 -1.1 -4.0 succinylglutamate desuccinylase compare
PP_0760 -1.1 -3.1 conserved membrane protein of unknown function compare
PP_1778 -1.1 -3.4 Lipopolysaccharide ABC export system, permease protein compare
PP_1999 -1.1 -2.2 membrane protein required for colicin V production compare
PP_4988 -1.1 -4.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0719 -1.1 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4699 -1.1 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1763 -1.1 -2.0 putative oxidoreductase compare
PP_5014 -1.1 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_3505 -1.1 -1.8 conserved protein of unknown function compare
PP_0484 -1.1 -4.4 transporter of an unknown substrate compare
PP_0405 -1.1 -5.3 conserved protein of unknown function compare
PP_4937 -1.1 -3.5 toluene tolerance protein compare
PP_4943 -1.1 -1.8 putative Glycosyl transferase compare
PP_4060 -1.1 -7.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4832 -1.1 -1.8 Precorrin-6x reductase compare
PP_2302 -1.1 -4.2 DNA-binding, ATP-dependent protease compare
PP_0406 -1.1 -1.8 Nucleotidyltransferase family protein compare
PP_2929 -1.1 -4.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5322 -1.1 -3.3 putative metal ion transporter compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms