| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +2.1 | 9.4 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +1.9 | 17.5 | glycine dehydrogenase (NCBI) | compare |
| b1361 | ydaW | +1.7 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2905 | gcvT | +1.7 | 13.4 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1161 | ycgX | +1.7 | 1.7 | hypothetical protein (NCBI) | compare |
| b4676 | yoaK | +1.5 | 1.9 | expressed protein (RefSeq) | compare |
| b1506 | yneL | +1.3 | 2.9 | predicted transcriptional regulator (NCBI) | compare |
| b2808 | gcvA | +1.2 | 7.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0059 | hepA | +1.1 | 10.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b0232 | yafN | +1.1 | 0.9 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4402 | yjjY | +1.1 | 2.3 | hypothetical protein (NCBI) | compare |
| b4203 | rplI | +1.1 | 6.8 | 50S ribosomal protein L9 (NCBI) | compare |
| b3206 | npr | +1.0 | 7.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2829 | ptsP | +1.0 | 7.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3977 | tyrU | +0.9 | 1.8 | tRNA-Tyr (NCBI) | compare |
| b2504 | yfgG | +0.9 | 2.3 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b3806 | cyaA | +0.9 | 4.8 | adenylate cyclase (NCBI) | compare |
| b0784 | moaD | +0.8 | 3.1 | molybdopterin synthase, small subunit (NCBI) | compare |
| b0990 | cspG | +0.8 | 1.4 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4701 | sokX | +0.8 | 1.0 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4048 | yjbM | +0.7 | 1.7 | hypothetical protein (NCBI) | compare |
| b2587 | kgtP | +0.7 | 5.9 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1575 | dicB | +0.7 | 1.6 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b2947 | gshB | +0.7 | 4.7 | glutathione synthetase (NCBI) | compare |
| b1656 | sodB | +0.7 | 3.0 | superoxide dismutase, Fe (NCBI) | compare |
| b4406 | yaeP | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +0.7 | 4.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1418 | cybB | +0.7 | 2.8 | cytochrome b(561) (VIMSS) | compare |
| b1823 | cspC | +0.7 | 2.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b1563 | relE | +0.7 | 2.2 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b3164 | pnp | +0.7 | 3.0 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3842 | rfaH | +0.7 | 4.5 | transcriptional activator RfaH (NCBI) | compare |
| b4416 | rybA | +0.7 | 1.8 | unknown RNA (NCBI) | compare |
| b1567 | intK | +0.6 | 2.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b1438 | ydcQ | +0.6 | 2.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1066 | rimJ | +0.6 | 4.2 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b3643 | rph | +0.6 | 1.9 | ribonuclease PH (NCBI) | compare |
| b1095 | fabF | +0.6 | 3.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4453 | ldrD | +0.6 | 2.2 | toxic polypeptide, small (NCBI) | compare |
| b2356 | yfdM | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4215 | ytfI | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b2688 | gshA | +0.6 | 4.0 | glutamate--cysteine ligase (NCBI) | compare |
| b1258 | yciF | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b1634 | tppB | +0.5 | 3.2 | putative tripeptide transporter permease (NCBI) | compare |
| b1138 | ymfE | +0.5 | 1.3 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b0082 | mraW | +0.5 | 2.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4653 | yicT | +0.5 | 1.5 | no description | compare |
| b1334 | fnr | +0.5 | 1.3 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1818 | manY | +0.5 | 1.9 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1222 | narX | +0.5 | 2.9 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0550 | rusA | +0.5 | 1.7 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b4155 | yjeA | +0.5 | 0.6 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1676 | pykF | +0.5 | 2.9 | pyruvate kinase (NCBI) | compare |
| b2783 | chpR | +0.5 | 2.0 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b2702 | srlA | +0.5 | 2.8 | glucitol/sorbitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b2618 | b2618 | +0.5 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4598 | yncL | +0.5 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1038 | csgF | +0.5 | 1.6 | predicted transport protein (NCBI) | compare |
| b2444 | yffM | +0.5 | 1.8 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1855 | lpxM | +0.5 | 2.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2141 | yohJ | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b1792 | yeaO | +0.5 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1362 | rzpR | +0.5 | 1.9 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2136 | yohD | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3928 | yiiU | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b1727 | yniC | +0.4 | 1.8 | predicted hydrolase (NCBI) | compare |
| b1486 | ddpB | +0.4 | 1.9 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b2236 | yfaE | +0.4 | 1.9 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4545 | ypdJ | +0.4 | 1.2 | no description | compare |
| b2951 | yggS | +0.4 | 2.5 | predicted enzyme (NCBI) | compare |
| b4369 | leuP | +0.4 | 1.5 | tRNA-Leu (NCBI) | compare |
| b4413 | sokC | +0.4 | 1.2 | regulatory antisense RNA (NCBI) | compare |
| b0381 | ddlA | +0.4 | 3.1 | D-alanylalanine synthetase (NCBI) | compare |
| b4441 | glmY | +0.4 | 1.3 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b1426 | ydcH | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1141 | ymfG | +0.4 | 2.3 | e14 prophage; predicted excisionase (NCBI) | compare |
| b3632 | rfaQ | +0.4 | 4.0 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1703 | ydiA | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b1305 | pspB | +0.4 | 1.9 | phage shock protein B (NCBI) | compare |
| b2679 | proX | +0.4 | 2.7 | glycine betaine transporter subunit (NCBI) | compare |
| b2939 | yqgB | +0.4 | 0.7 | predicted protein (RefSeq) | compare |
| b2175 | spr | +0.4 | 2.2 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0051 | ksgA | +0.4 | 2.0 | dimethyladenosine transferase (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1627 | rsxA | +0.4 | 1.2 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b4141 | yjeH | +0.4 | 3.5 | predicted transporter (NCBI) | compare |
| b4062 | soxS | +0.4 | 1.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1183 | umuD | +0.4 | 1.3 | DNA polymerase V, subunit D (NCBI) | compare |
| b1726 | yniB | +0.4 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b2341 | yfcX | +0.4 | 3.0 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b4135 | yjdC | +0.4 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b3082 | ygjM | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3043 | ygiL | +0.4 | 2.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1090 | plsX | +0.4 | 2.3 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b2170 | setB | +0.4 | 1.9 | lactose/glucose efflux system (NCBI) | compare |
| b2134 | pbpG | +0.4 | 2.4 | penicillin-binding protein 7 (VIMSS) | compare |
| b1562 | hokD | +0.4 | 1.4 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b2266 | elaB | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b3766 | ilvL | +0.4 | 1.1 | ilvG operon leader peptide (NCBI) | compare |
| b3630 | rfaP | +0.4 | 3.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2897 | ygfY | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b3098 | yqjD | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1812 | pabB | +0.4 | 1.7 | para-aminobenzoate synthase component I (NCBI) | compare |
| b1278 | pgpB | +0.4 | 1.4 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b2768 | ygcP | +0.4 | 1.8 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b3890 | yiiF | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1013 | ycdC | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1504 | ydeS | +0.4 | 1.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2910 | zapA | +0.4 | 2.5 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1679 | sufE | +0.4 | 1.6 | cysteine desufuration protein SufE (NCBI) | compare |
| b2248 | yfaX | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1485 | ddpC | +0.4 | 1.9 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1660 | ydhC | +0.4 | 1.5 | predicted transporter (NCBI) | compare |
| b1752 | ydjZ | +0.4 | 0.9 | conserved inner membrane protein (NCBI) | compare |
| b2774 | ygcW | +0.4 | 2.0 | putative oxidoreductase (VIMSS) | compare |
| b1218 | chaC | +0.4 | 1.3 | regulatory protein for cation transport (RefSeq) | compare |
| b0190 | yaeQ | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1791 | yeaN | +0.4 | 1.7 | predicted transporter (NCBI) | compare |
| b2419 | yfeK | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b3350 | kefB | +0.4 | 3.3 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b4655 | ythA | +0.4 | 0.6 | expressed protein (RefSeq) | compare |
| b0129 | yadI | +0.4 | 2.8 | predicted PTS Enzyme IIA (NCBI) | compare |
| b4461 | yfjD | +0.4 | 2.7 | predicted inner membrane protein (RefSeq) | compare |
| b3628 | rfaB | +0.4 | 2.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1685 | ydiH | +0.4 | 0.8 | predicted protein (RefSeq) | compare |
| b1914 | uvrY | +0.4 | 2.1 | response regulator (NCBI) | compare |
| b4511 | ybdZ | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2521 | sseA | +0.4 | 2.8 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b0711 | ybgJ | +0.4 | 2.4 | predicted enzyme subunit (NCBI) | compare |
| b1446 | ydcY | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b3351 | kefG | +0.3 | 2.4 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b2343 | b2343 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4378 | yjjV | +0.3 | 2.3 | predicted DNase (NCBI) | compare |
| b1247 | oppF | +0.3 | 1.3 | oligopeptide transporter subunit (NCBI) | compare |
| b3101 | yqjF | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1390 | paaC | +0.3 | 1.4 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b3086 | ygjQ | +0.3 | 2.2 | predicted thioredoxin-like (NCBI) | compare |
| b2399 | yfeD | +0.3 | 2.0 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0759 | galE | +0.3 | 2.1 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b0852 | rimK | +0.3 | 1.8 | ribosomal protein S6 modification protein (NCBI) | compare |
| b4041 | plsB | +0.3 | 1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1589 | ynfG | +0.3 | 1.0 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b1359 | ydaU | +0.3 | 1.5 | Rac prophage; conserved protein (NCBI) | compare |
| b1821 | b1821 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0865 | ybjP | +0.3 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b3199 | yrbK | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b3557 | insJ | +0.3 | 2.3 | IS150 protein InsA (NCBI) | compare |
| b1123 | potD | +0.3 | 1.8 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b1335 | ogt | +0.3 | 1.3 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b0751 | pnuC | +0.3 | 2.0 | predicted nicotinamide mononucleotide transporter (NCBI) | compare |
| b2058 | wcaB | +0.3 | 0.7 | predicted acyl transferase (NCBI) | compare |
| b0989 | cspH | +0.3 | 1.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b1650 | nemA | +0.3 | 1.6 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b0926 | ycbK | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3836 | b3836 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4174 | hflK | +0.3 | 2.6 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b4533 | ynfO | +0.3 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b1187 | fadR | +0.3 | 2.2 | fatty acid metabolism regulator (NCBI) | compare |
| b0792 | ybhR | +0.3 | 1.6 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3929 | rraA | +0.3 | 2.5 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1647 | ydhF | +0.3 | 1.2 | predicted oxidoreductase (NCBI) | compare |
| b1597 | asr | +0.3 | 1.1 | acid shock protein (VIMSS) | compare |
| b1122 | ymfA | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3033 | yqiB | +0.3 | 2.2 | predicted dehydrogenase (NCBI) | compare |
| b0219 | yafV | +0.3 | 1.8 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b4660 | yhiL | +0.3 | 0.2 | no description | compare |
| b1617 | uidA | +0.3 | 1.7 | beta-D-glucuronidase (NCBI) | compare |
| b3780 | rhlB | +0.3 | 2.5 | ATP-dependent RNA helicase (NCBI) | compare |
| b4345 | mcrC | +0.3 | 0.5 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b0856 | potH | +0.3 | 1.4 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1819 | manZ | +0.3 | 1.8 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b4631 | ykgQ | +0.3 | 1.1 | no description | compare |
| b4371 | rsmC | +0.3 | 2.3 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1111 | ycfQ | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3627 | rfaI | +0.3 | 2.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0955 | ycbZ | +0.3 | 2.5 | predicted peptidase (NCBI) | compare |
| b0545 | ybcL | +0.3 | 2.4 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b3009 | yghB | +0.3 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1035 | ycdY | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b4543 | ypaA | +0.3 | 1.7 | predicted protein (NCBI) | compare |
| b1751 | ydjY | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0502 | ylbG | +0.3 | 1.3 | no description | compare |
| b2099 | yegU | +0.3 | 1.8 | predicted hydrolase (NCBI) | compare |
| b3631 | rfaG | +0.3 | 2.7 | glucosyltransferase I (NCBI) | compare |
| b1085 | b1085 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0849 | grxA | +0.3 | 0.8 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b1621 | malX | +0.3 | 1.7 | fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component (NCBI) | compare |
| b0405 | queA | +0.3 | 2.1 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b1199 | dhaL | +0.3 | 1.1 | dihydroxyacetone kinase, C-terminal domain (NCBI) | compare |
| b3545 | proK | +0.3 | 0.9 | tRNA-Pro (NCBI) | compare |
| b0197 | metQ | +0.3 | 2.0 | DL-methionine transporter subunit (NCBI) | compare |
| b1433 | b1433 | +0.3 | 1.5 | putative membrane transport protein (VIMSS) | compare |
| b1922 | fliA | +0.3 | 1.9 | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | compare |
| b1739 | osmE | +0.3 | 1.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b2346 | vacJ | +0.3 | 2.3 | predicted lipoprotein (NCBI) | compare |
| b1322 | ycjF | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b3152 | yraR | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2151 | galS | +0.3 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1618 | uidR | +0.3 | 0.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4521 | ycgI | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |