| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +1.9 | 9.5 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +1.9 | 17.5 | glycine dehydrogenase (NCBI) | compare |
| b2905 | gcvT | +1.5 | 10.9 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b4701 | sokX | +1.5 | 2.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2808 | gcvA | +1.3 | 7.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3977 | tyrU | +1.2 | 2.3 | tRNA-Tyr (NCBI) | compare |
| b0059 | hepA | +1.2 | 11.1 | ATP-dependent helicase HepA (NCBI) | compare |
| b3181 | greA | +1.1 | 5.1 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4203 | rplI | +1.0 | 6.3 | 50S ribosomal protein L9 (NCBI) | compare |
| b2829 | ptsP | +1.0 | 7.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b4647 | mokA | +1.0 | 1.2 | no description | compare |
| b4503 | yafF | +0.9 | 0.9 | no description | compare |
| b3206 | npr | +0.8 | 4.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4533 | ynfO | +0.8 | 1.9 | Qin prophage; predicted protein (NCBI) | compare |
| b2587 | kgtP | +0.8 | 5.9 | alpha-ketoglutarate transporter (NCBI) | compare |
| b4698 | mgrR | +0.8 | 2.8 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1334 | fnr | +0.8 | 2.6 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1438 | ydcQ | +0.8 | 3.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1667 | ydhR | +0.7 | 1.3 | hypothetical protein (NCBI) | compare |
| b4172 | hfq | +0.7 | 1.1 | RNA-binding protein Hfq (NCBI) | compare |
| b3806 | cyaA | +0.7 | 3.7 | adenylate cyclase (NCBI) | compare |
| b3504 | yhiS | +0.7 | 0.7 | hypothetical protein (RefSeq) | compare |
| b0303 | ykgI | +0.7 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2688 | gshA | +0.7 | 4.4 | glutamate--cysteine ligase (NCBI) | compare |
| b2236 | yfaE | +0.7 | 3.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4373 | rimI | +0.7 | 3.8 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4535 | yniD | +0.7 | 1.2 | predicted protein (RefSeq) | compare |
| b3164 | pnp | +0.7 | 2.9 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0989 | cspH | +0.7 | 2.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b2951 | yggS | +0.6 | 3.6 | predicted enzyme (NCBI) | compare |
| b2804 | fucU | +0.6 | 3.0 | L-fucose mutarotase (NCBI) | compare |
| b2444 | yffM | +0.6 | 1.6 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b0784 | moaD | +0.6 | 2.7 | molybdopterin synthase, small subunit (NCBI) | compare |
| b1095 | fabF | +0.6 | 3.9 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1669 | ydhT | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b4546 | ypeB | +0.6 | 1.2 | hypothetical protein (NCBI) | compare |
| b0219 | yafV | +0.6 | 2.5 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b3443 | yrhA | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3341 | rpsG | +0.5 | 1.4 | 30S ribosomal protein S7 (NCBI) | compare |
| b1752 | ydjZ | +0.5 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b2506 | yfgI | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b2783 | chpR | +0.5 | 2.2 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b2947 | gshB | +0.5 | 3.0 | glutathione synthetase (NCBI) | compare |
| b3068 | ygjF | +0.5 | 1.2 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b0627 | tatE | +0.5 | 1.3 | twin arginine translocase protein E (NCBI) | compare |
| b2934 | cmtB | +0.5 | 0.6 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2939 | yqgB | +0.5 | 1.4 | predicted protein (RefSeq) | compare |
| b3643 | rph | +0.5 | 1.6 | ribonuclease PH (NCBI) | compare |
| b1758 | b1758 | +0.5 | 1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b2659 | b2659 | +0.5 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1160 | elbA | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b3979 | thrT | +0.5 | 0.5 | tRNA-Thr (NCBI) | compare |
| b1360 | ydaV | +0.5 | 0.7 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1742 | b1742 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | +0.5 | 1.0 | unknown RNA (NCBI) | compare |
| b0610 | rnk | +0.5 | 2.2 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b4406 | yaeP | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1400 | paaY | +0.5 | 1.8 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4345 | mcrC | +0.5 | 0.9 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b4215 | ytfI | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b1607 | ydgC | +0.5 | 1.0 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b0998 | torD | +0.4 | 0.9 | chaperone protein TorD (NCBI) | compare |
| b4012 | yjaB | +0.4 | 1.4 | predicted acetyltransferase (NCBI) | compare |
| b2823 | ppdC | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b2366 | dsdA | +0.4 | 2.8 | D-serine dehydratase (NCBI) | compare |
| b1697 | ydiQ | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b0661 | miaB | +0.4 | 3.7 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b1642 | slyA | +0.4 | 1.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0051 | ksgA | +0.4 | 2.5 | dimethyladenosine transferase (NCBI) | compare |
| b2521 | sseA | +0.4 | 3.6 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b3632 | rfaQ | +0.4 | 4.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1597 | asr | +0.4 | 1.9 | acid shock protein (VIMSS) | compare |
| b3630 | rfaP | +0.4 | 3.6 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0759 | galE | +0.4 | 2.9 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b0232 | yafN | +0.4 | 0.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3842 | rfaH | +0.4 | 3.1 | transcriptional activator RfaH (NCBI) | compare |
| b4141 | yjeH | +0.4 | 3.6 | predicted transporter (NCBI) | compare |
| b1739 | osmE | +0.4 | 1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b4603 | rseX | +0.4 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2830 | nudH | +0.4 | 1.1 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1849 | purT | +0.4 | 2.5 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b0249 | ykfF | +0.4 | 1.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1868 | yecE | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2237 | inaA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4369 | leuP | +0.4 | 1.1 | tRNA-Leu (NCBI) | compare |
| b2356 | yfdM | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2198 | ccmD | +0.4 | 1.9 | cytochrome c biogenesis protein (NCBI) | compare |
| b1567 | intK | +0.4 | 1.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b4135 | yjdC | +0.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b3199 | yrbK | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b0852 | rimK | +0.4 | 2.2 | ribosomal protein S6 modification protein (NCBI) | compare |
| b4294 | insA-7 | +0.4 | 1.5 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.2 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b1855 | lpxM | +0.4 | 2.2 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2376 | ypdI | +0.4 | 1.7 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b1630 | rsxD | +0.4 | 2.3 | electron transport complex protein RnfD (NCBI) | compare |
| b3043 | ygiL | +0.4 | 2.2 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0502 | ylbG | +0.4 | 1.2 | no description | compare |
| b1282 | yciH | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2082 | ogrK | +0.4 | 1.4 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0190 | yaeQ | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1671 | ydhX | +0.4 | 0.8 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1125 | potB | +0.4 | 2.1 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b4692 | oweE | +0.4 | 1.4 | no description | compare |
| b2684 | mprA | +0.4 | 2.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4050 | yjbO | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1618 | uidR | +0.4 | 1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1589 | ynfG | +0.4 | 1.1 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b1548 | nohA | +0.4 | 1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1253 | yciA | +0.4 | 1.2 | predicted hydrolase (NCBI) | compare |
| b1380 | ldhA | +0.4 | 0.9 | D-lactate dehydrogenase (NCBI) | compare |
| b2726 | hypA | +0.4 | 2.5 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b3780 | rhlB | +0.4 | 3.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b1793 | yoaF | +0.4 | 1.4 | conserved outer membrane protein (NCBI) | compare |
| b0580 | ybdJ | +0.4 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b4523 | yciX | +0.4 | 1.8 | hypothetical protein (RefSeq) | compare |
| b1199 | dhaL | +0.4 | 1.6 | dihydroxyacetone kinase, C-terminal domain (NCBI) | compare |
| b1141 | ymfG | +0.4 | 1.6 | e14 prophage; predicted excisionase (NCBI) | compare |
| b0696 | kdpC | +0.3 | 1.9 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1854 | pykA | +0.3 | 2.4 | pyruvate kinase (NCBI) | compare |
| b3769 | ilvM | +0.3 | 1.4 | acetolactate synthase II, small subunit (NCBI) | compare |
| b2735 | ygbI | +0.3 | 1.8 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2646 | ypjF | +0.3 | 1.4 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b4695 | ykgT | +0.3 | 1.3 | no description | compare |
| b2707 | srlR | +0.3 | 2.1 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b2007 | yeeX | +0.3 | 1.5 | conserved protein (RefSeq) | compare |
| b3351 | kefG | +0.3 | 2.6 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b0550 | rusA | +0.3 | 0.8 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b4030 | yjbA | +0.3 | 1.6 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b2114 | metG | +0.3 | 1.1 | methionyl-tRNA synthetase (NCBI) | compare |
| b3009 | yghB | +0.3 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b3002 | yqhA | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.3 | conserved inner membrane protein (RefSeq) | compare |
| b0881 | clpS | +0.3 | 1.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b3929 | rraA | +0.3 | 2.6 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b3292 | zntR | +0.3 | 1.4 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b3350 | kefB | +0.3 | 3.1 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b4582 | yoeA | +0.3 | 1.6 | no description | compare |
| b1302 | puuE | +0.3 | 1.4 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b1904 | yecR | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1823 | cspC | +0.3 | 1.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b2579 | yfiD | +0.3 | 1.2 | pyruvate formate lyase subunit (NCBI) | compare |
| b1394 | paaG | +0.3 | 1.5 | enoyl-CoA hydratase (NCBI) | compare |
| b2910 | zapA | +0.3 | 1.0 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1575 | dicB | +0.3 | 0.7 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b0796 | ybiH | +0.3 | 1.9 | putative transcriptional regulator (VIMSS) | compare |
| b1273 | yciN | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b3601 | mtlR | +0.3 | 2.1 | DNA-binding repressor (NCBI) | compare |
| b1139 | lit | +0.3 | 1.8 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b1751 | ydjY | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1953 | b1953 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1609 | rstB | +0.3 | 1.8 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b1222 | narX | +0.3 | 1.7 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0195 | yaeB | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.3 | 1.5 | e14 prophage; predicted protein (NCBI) | compare |
| b3423 | glpR | +0.3 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0178 | hlpA | +0.3 | 1.9 | periplasmic chaperone (NCBI) | compare |
| b2103 | thiD | +0.3 | 2.1 | phosphomethylpyrimidine kinase (NCBI) | compare |
| b1395 | paaH | +0.3 | 2.1 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b2134 | pbpG | +0.3 | 1.5 | penicillin-binding protein 7 (VIMSS) | compare |
| b1824 | yobF | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b0197 | metQ | +0.3 | 2.4 | DL-methionine transporter subunit (NCBI) | compare |
| b0955 | ycbZ | +0.3 | 2.3 | predicted peptidase (NCBI) | compare |
| b1519 | tam | +0.3 | 1.7 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b3484 | yhhI | +0.3 | 1.2 | predicted transposase (NCBI) | compare |
| b1755 | ynjC | +0.3 | 1.8 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1692 | ydiB | +0.3 | 1.3 | quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b0791 | ybhQ | +0.3 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b4521 | ycgI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3469 | zntA | +0.3 | 2.2 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b1278 | pgpB | +0.3 | 0.9 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1231 | tyrT | +0.3 | 0.5 | tRNA-Tyr (NCBI) | compare |
| b0469 | apt | +0.3 | 2.2 | adenine phosphoribosyltransferase (NCBI) | compare |
| b0225 | yafQ | +0.3 | 1.4 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1632 | rsxE | +0.3 | 2.1 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b0934 | ycbM | +0.3 | 1.3 | putative transport system permease protein (VIMSS) | compare |
| b4461 | yfjD | +0.3 | 2.5 | predicted inner membrane protein (RefSeq) | compare |
| b1307 | pspD | +0.3 | 0.8 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b3034 | nudF | +0.3 | 1.8 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b4048 | yjbM | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b2889 | idi | +0.3 | 1.8 | isopentenyl-diphosphate delta-isomerase (NCBI) | compare |
| b1727 | yniC | +0.3 | 1.1 | predicted hydrolase (NCBI) | compare |
| b4041 | plsB | +0.3 | 0.9 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b4581 | ybeM | +0.3 | 1.8 | no description | compare |
| b3631 | rfaG | +0.3 | 2.6 | glucosyltransferase I (NCBI) | compare |
| b3627 | rfaI | +0.3 | 2.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1486 | ddpB | +0.3 | 0.9 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b0751 | pnuC | +0.3 | 1.9 | predicted nicotinamide mononucleotide transporter (NCBI) | compare |
| b0678 | nagB | +0.3 | 1.2 | glucosamine-6-phosphate deaminase (NCBI) | compare |
| b1676 | pykF | +0.3 | 1.3 | pyruvate kinase (NCBI) | compare |
| b4699 | fnrS | +0.3 | 0.4 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2168 | fruK | +0.3 | 0.7 | 1-phosphofructokinase (NCBI) | compare |
| b4527 | b1354 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3446 | yrhB | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | +0.3 | 1.0 | no description | compare |
| b2702 | srlA | +0.3 | 2.1 | glucitol/sorbitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b4675 | yoaJ | +0.3 | 1.4 | expressed protein (RefSeq) | compare |
| b1767 | ansA | +0.3 | 1.9 | cytoplasmic asparaginase I (NCBI) | compare |
| b0809 | glnQ | +0.3 | 1.6 | glutamine ABC transporter ATP-binding protein (NCBI) | compare |
| b1075 | flgD | +0.3 | 1.3 | flagellar basal body rod modification protein D (NCBI) | compare |