Experiment set51S739 for Pseudomonas putida KT2440

Compare to:

Time6-phageFRS

200 most important genes:

  gene name fitness t score description  
PP_4099 -6.0 -20.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0422 -5.6 -3.9 Indole-3-glycerol phosphate synthase compare
PP_0420 -5.5 -5.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1650 -5.3 -7.8 Sensor protein GacS compare
PP_4678 -5.3 -3.6 Ketol-acid reductoisomerase compare
PP_4890 -5.2 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -5.1 -11.0 Anthranilate synthase component 1 compare
PP_3511 -5.1 -5.0 Branched-chain-amino-acid aminotransferase compare
PP_4680 -5.1 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -5.0 -4.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -4.9 -5.8 3-isopropylmalate dehydrogenase compare
PP_0293 -4.9 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -4.8 -3.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -4.8 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -4.8 -6.5 Anthranilate phosphoribosyltransferase compare
PP_5015 -4.6 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5097 -4.6 -11.8 homoserine O-acetyltransferase compare
PP_4679 -4.6 -4.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0362 -4.5 -11.7 Biotin synthase compare
PP_5289 -4.5 -3.1 Acetylglutamate kinase compare
PP_0966 -4.5 -6.2 Histidinol dehydrogenase compare
PP_0082 -4.5 -3.1 tryptophan synthase alpha chain compare
PP_5185 -4.4 -3.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -4.3 -3.0 tryptophan synthase beta chain compare
PP_1088 -4.3 -6.6 Argininosuccinate synthase compare
PP_1986 -4.3 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_0291 -4.3 -4.1 conserved protein of unknown function compare
PP_0292 -4.3 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1985 -4.2 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_0184 -4.1 -4.0 Argininosuccinate lyase compare
PP_0965 -4.1 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -4.0 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0364 -4.0 -8.5 pimeloyl-[acp] methyl ester esterase compare
PP_5098 -4.0 -8.0 methionine biosynthesis protein MetW compare
PP_1367 -3.9 -5.4 formyltetrahydrofolate hydrolase compare
PP_4984 -3.9 -10.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1079 -3.8 -2.6 Ornithine carbamoyltransferase compare
PP_0363 -3.8 -11.0 8-amino-7-oxononanoate synthase compare
PP_5128 -3.7 -9.1 Dihydroxy-acid dehydratase compare
PP_2001 -3.7 -8.8 O-succinylhomoserine sulfhydrylase compare
PP_5303 -3.6 -5.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0366 -3.6 -6.8 dethiobiotin synthetase compare
PP_4699 -3.5 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1198 -3.5 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0365 -3.4 -9.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4941 -3.3 -5.5 conserved exported protein of unknown function compare
PP_1237 -3.2 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5014 -3.2 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4944 -3.0 -2.0 Carbamoyltransferase compare
PP_0495 -2.9 -2.8 type 1 L-asparaginase compare
PP_5155 -2.8 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4917 -2.6 -3.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2327 -2.6 -2.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1099 -2.5 -2.9 Cold shock protein CapB compare
PP_5328 -2.3 -1.6 putative phosphate transport system permease protein compare
PP_2121 -2.2 -2.5 putative Lipoprotein compare
PP_5350 -2.2 -3.5 Transcriptional regulator, RpiR family compare
PP_5338 -2.1 -1.4 aspartate ammonia-lyase compare
PP_4874 -2.1 -1.4 50S ribosomal protein L9 compare
PP_2378 -2.0 -1.4 Fe/S biogenesis protein NfuA compare
PP_5337 -2.0 -2.7 LysR family transcriptional regulator compare
PP_4909 -1.9 -1.3 phosphoserine phosphatase compare
PP_5317 -1.9 -3.5 Probable chorismate pyruvate-lyase compare
PP_4213 -1.9 -2.5 putative dipeptidase compare
PP_1303 -1.9 -5.2 Sulfate adenylyltransferase subunit 2 compare
PP_1025 -1.8 -6.7 2-isopropylmalate synthase compare
PP_0963 -1.8 -2.5 putative BolA family protein compare
PP_1428 -1.8 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_4120 -1.8 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_2414 -1.8 -1.7 conserved exported protein of unknown function compare
PP_4196 -1.7 -2.8 conserved exported protein of unknown function compare
PP_2328 -1.7 -1.6 Phosphoadenosine phosphosulfate reductase compare
PP_5483 -1.7 -1.9 conserved protein of unknown function compare
PP_0630 -1.7 -1.5 DNA gyrase inhibitor YacG compare
PP_2370 -1.6 -1.1 conserved protein of unknown function compare
PP_0117 -1.6 -4.0 Zn(2+) ABC transporter - permease subunit compare
PP_0261 -1.6 -4.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4937 -1.6 -3.5 toluene tolerance protein compare
PP_5331 -1.6 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4379 -1.6 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4546 -1.6 -2.7 ATP-dependent helicase HrpA compare
PP_5085 -1.6 -5.9 malic enzyme B compare
PP_4891 -1.6 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1122 -1.5 -2.5 OmpA family protein compare
PP_4902 -1.5 -1.4 Oligoribonuclease compare
PP_1468 -1.5 -2.1 Tyrosine recombinase XerD compare
PP_2329 -1.5 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4332 -1.4 -4.1 Chemotaxis protein CheW compare
PP_1304 -1.4 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4701 -1.4 -1.2 glucose-6-phosphate isomerase compare
PP_4942 -1.3 -2.3 conserved protein of unknown function compare
PP_4122 -1.3 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4247 -1.3 -1.3 Exonuclease compare
PP_5114 -1.3 -2.0 putative adenine methyltransferase compare
PP_0833 -1.3 -0.9 queuine tRNA-ribosyltransferase compare
PP_5198 -1.3 -3.2 conserved protein of unknown function compare
PP_0440 -1.3 -2.2 Elongation factor Tu-A compare
PP_4215 -1.3 -3.1 pyoverdine biosynthesis related protein compare
PP_1362 -1.3 -2.9 pyruvate kinase II compare
PP_3198 -1.3 -1.7 Ferredoxin, 2Fe-2S compare
PP_4993 -1.2 -3.2 Glutathione synthetase compare
PP_4696 -1.2 -3.5 Nitrogen regulation protein NR(I) compare
PP_1142 -1.2 -1.4 conserved protein of unknown function compare
PP_1097 -1.2 -1.4 Methionine--tRNA ligase compare
PP_4131 -1.2 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_t11 -1.2 -2.1 tRNA-Lys compare
PP_5227 -1.2 -4.5 diaminopimelate decarboxylase compare
PP_5610 -1.1 -1.8 protein of unknown function compare
PP_1783 -1.1 -0.8 dTDP-glucose pyrophosphorylase compare
PP_1826 -1.1 -2.4 Hydrolase, isochorismatase family compare
PP_4124 -1.1 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_4824 -1.1 -3.9 Sensor histidine kinase/response regulator compare
PP_1878 -1.1 -5.2 conserved protein of unknown function compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1001 -1.1 -1.8 arginine deiminase compare
PP_3121 -1.1 -3.1 transcriptional regulator, LysR family compare
PP_2820 -1.1 -2.8 HTH-type transcriptional regulator nfxB compare
PP_1917 -1.1 -4.5 4-amino-4-deoxychorismate lyase compare
PP_1683 -1.1 -2.1 Transcriptional regulator, MarR family compare
PP_4214 -1.1 -2.5 pyoverdine biosynthesis related protein compare
PP_0832 -1.1 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0962 -1.1 -1.8 toluene-tolerance protein compare
PP_5058 -1.1 -2.9 Carboxy-terminal-processing protease compare
PP_3924 -1.1 -2.4 conserved protein of unknown function compare
PP_5652 -1.0 -1.9 conserved protein of unknown function, phage origin compare
PP_5201 -1.0 -2.4 conserved protein of unknown function, UPF0149 family compare
PP_4684 -1.0 -4.5 conserved protein of unknown function with kinase-like domain compare
PP_1733 -1.0 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4338 -1.0 -5.0 Chemotaxis histidine kinase CheA compare
PP_1214 -1.0 -2.1 putative transcriptional regulatory protein compare
PP_0118 -1.0 -3.9 zinc import ATP-binding protein compare
PP_4121 -1.0 -2.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4058 -1.0 -5.5 1,4-alpha-glucan branching enzyme compare
PP_3052 -1.0 -1.0 conserved protein of unknown function compare
PP_1912 -1.0 -3.0 Phosphate acyltransferase compare
PP_2929 -1.0 -4.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5489 -1.0 -2.8 conserved protein of unknown function compare
PP_0435 -1.0 -4.0 Peptidase, M23/M37 family compare
PP_4880 -0.9 -3.7 exoribonuclease R compare
PP_5241 -0.9 -1.4 DNA-binding response regulator, LuxR family compare
PP_2371 -0.9 -0.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1216 -0.9 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0063 -0.9 -3.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2107 -0.9 -1.2 conserved protein of unknown function compare
PP_4333 -0.9 -4.1 CheW domain protein compare
PP_4350 -0.9 -3.9 Aminotransferase, class V, NifS/IscS family compare
PP_5110 -0.9 -1.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4808 -0.9 -1.6 23S rRNA m3psi1915 methyltransferase compare
PP_1664 -0.9 -1.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0914 -0.9 -4.7 GGDEF domain protein compare
PP_3649 -0.9 -2.0 Transcriptional regulator, GntR family compare
PP_1233 -0.9 -2.1 sulfurtransferase compare
PP_3999 -0.9 -0.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2302 -0.9 -2.7 DNA-binding, ATP-dependent protease compare
PP_2900 -0.9 -1.3 conserved protein of unknown function compare
PP_4860 -0.9 -5.7 putative Mannose-6-phosphate isomerase compare
PP_3891 -0.8 -1.7 conserved protein of unknown function compare
PP_4208 -0.8 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3020 -0.8 -1.4 putative Serine/threonine protein phosphatase compare
PP_5035 -0.8 -3.7 Histidine utilization repressor compare
PP_0122 -0.8 -1.5 conserved exported protein of unknown function compare
PP_2568 -0.8 -1.2 Ring-cleaving dioxygenase compare
PP_3239 -0.8 -1.9 putative cointegrate resolution protein T Tn4652 compare
PP_4199 -0.8 -1.0 putative Lipoprotein compare
PP_5236 -0.8 -4.3 conserved protein of unknown function compare
PP_4517 -0.8 -1.5 conserved protein of unknown function compare
PP_4218 -0.8 -2.7 Lipase/esterase family protein compare
PP_5507 -0.8 -1.8 protein of unknown function compare
PP_0640 -0.8 -2.1 conserved protein of unknown function compare
PP_3539 -0.8 -1.8 putative Transcriptional regulator compare
PP_1994 -0.8 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_5505 -0.8 -1.7 conserved transmembrane protein of unknown function compare
PP_1629 -0.8 -3.0 Protein RecA compare
PP_3824 -0.8 -1.8 conserved exported protein of unknown function compare
PP_3312 -0.8 -1.2 putative Heat shock protein compare
PP_3880 -0.8 -1.1 conserved exported protein of unknown function compare
PP_5675 -0.8 -2.5 conserved protein of unknown function compare
PP_3487 -0.8 -1.8 conserved exported protein of unknown function compare
PP_2816 -0.8 -1.7 putative Transcriptional regulator NfxB compare
PP_5229 -0.8 -2.4 conserved protein of unknown function compare
PP_1658 -0.8 -2.3 conserved protein of unknown function compare
PP_0120 -0.8 -3.1 putative zinc ABC transporter compare
PP_3541 -0.8 -1.1 Transporter, MgtC family compare
PP_5327 -0.8 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_4217 -0.8 -5.9 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2144 -0.8 -1.9 Transcriptional regulator, TetR family compare
PP_1041 -0.7 -1.2 twin arginine protein export complex subunit compare
PP_1589 -0.7 -3.8 uridylyltransferase compare
PP_3590 -0.7 -3.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0872 -0.7 -2.3 Peptide chain release factor 3 compare
PP_3771 -0.7 -3.1 conserved protein of unknown function compare
PP_3185 -0.7 -2.3 Pet18 protein compare
PP_5230 -0.7 -1.9 Tyrosine recombinase XerC compare
PP_1565 -0.7 -3.5 Phage portal protein, HK97 family compare
PP_4590 -0.7 -3.0 conserved protein of unknown function compare
PP_1344 -0.7 -0.9 conserved protein of unknown function compare
PP_4690 -0.7 -2.1 Rieske 2Fe-2S family protein compare
PP_0593 -0.7 -0.8 putative ribosome-binding factor compare
PP_4392 -0.7 -3.5 chemotaxis protein methyltransferase compare
PP_4966 -0.7 -1.1 transcriptional regulator of methionine metabolism compare


Specific Phenotypes

For 2 genes in this experiment