Experiment set51S738 for Pseudomonas putida KT2440
Time6-phageFRS
Group: phage moi 100Media: MM2_plus_SM_buffer
Culturing: putida_ML5, 10mL in 25mL erlen, Aerobic, at 28.5 (C), shaken=orbital, continuous
By: Katie on 2/7/24
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glyoxylate and dicarboxylate metabolism
- One carbon pool by folate
- Folate biosynthesis
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamine degradation I | 1 | 1 | 1 |
| 4-aminobenzoate biosynthesis I | 2 | 2 | 1 |
| L-glutamate biosynthesis I | 2 | 2 | 1 |
| ferrichrome biosynthesis | 2 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 1 |
| formaldehyde oxidation VII (THF pathway) | 4 | 4 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 3 | 1 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 1 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| chloramphenicol biosynthesis | 9 | 1 | 1 |
| superpathway of tetrahydrofolate biosynthesis | 10 | 8 | 1 |
| superpathway of candicidin biosynthesis | 11 | 4 | 1 |
| superpathway of tetrahydrofolate biosynthesis and salvage | 12 | 10 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |
| folate transformations I | 13 | 9 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 1 |
| superpathway of chorismate metabolism | 59 | 42 | 1 |