Experiment set50S281 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PP_4902 -3.2 -3.7 Oligoribonuclease compare
PP_0339 -2.7 -4.5 Pyruvate dehydrogenase E1 component compare
PP_0719 -1.9 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4999 -1.9 -1.3 dihydroorotase-like protein compare
PP_5328 -1.8 -2.7 putative phosphate transport system permease protein compare
PP_4937 -1.6 -7.3 toluene tolerance protein compare
PP_1898 -1.5 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0833 -1.3 -2.8 queuine tRNA-ribosyltransferase compare
PP_0856 -1.3 -3.3 conserved lipoprotein of unknown function compare
PP_4342 -1.3 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_1232 -1.2 -5.3 conserved exported protein of unknown function compare
PP_5095 -1.1 -2.7 pyrroline-5-carboxylate reductase compare
PP_2820 -1.1 -2.9 HTH-type transcriptional regulator nfxB compare
PP_5017 -1.1 -2.3 Sec-independent protein translocase protein TatB compare
PP_1912 -1.0 -4.3 Phosphate acyltransferase compare
PP_5329 -1.0 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4895 -1.0 -2.9 tRNA dimethylallyltransferase compare
PP_4994 -0.9 -2.7 conserved protein of unknown function compare
PP_4204 -0.9 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2337 -0.9 -3.4 aconitate isomerase compare
PP_t29 -0.9 -2.9 tRNA-Ala compare
PP_5575 -0.9 -2.7 conserved protein of unknown function compare
PP_4008 -0.9 -4.2 ATP-dependent serine protease compare
PP_2379 -0.8 -4.0 putative cytochrome oxidase biogenesis protein compare
PP_4379 -0.8 -3.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3903 -0.8 -2.2 conserved protein of unknown function compare
PP_0345 -0.8 -4.2 putative Heptose kinase WapP compare
PP_0346 -0.8 -5.9 putative Heptose kinase WapQ compare
PP_4700 -0.8 -1.6 pantothenate synthetase compare
PP_0393 -0.8 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0063 -0.7 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0834 -0.7 -1.6 Sec translocation complex subunit YajC compare
PP_5000 -0.7 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_2203 -0.7 -1.9 conserved protein of unknown function compare
PP_4782 -0.7 -3.2 Phosphomethylpyrimidine kinase compare
PP_0855 -0.7 -2.6 conserved protein of unknown function compare
PP_1553 -0.7 -1.5 conserved protein of unknown function compare
PP_4471 -0.7 -2.3 Magnesium transporter compare
PP_0725 -0.7 -4.6 conserved hypothetical TPR repeat protein compare
PP_3819 -0.7 -4.8 glutathione reductase (NADPH) compare
PP_4136 -0.7 -1.9 Transcriptional regulator, LuxR family compare
PP_4126 -0.7 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_0846 -0.7 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4199 -0.7 -1.6 putative Lipoprotein compare
PP_4120 -0.7 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_2144 -0.7 -3.3 Transcriptional regulator, TetR family compare
PP_4130 -0.6 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2336 -0.6 -3.1 aconitate hydratase 1 compare
PP_5456 -0.6 -1.0 conserved protein of unknown function compare
PP_t10 -0.6 -1.3 tRNA-Pro compare
PP_0832 -0.6 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5008 -0.6 -1.2 Poly granule-associated protein compare
PP_4787 -0.6 -2.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4156 -0.6 -2.3 Transcriptional regulator, LysR family compare
PP_1598 -0.6 -3.5 regulatory intramembrane protein RIP zinc protease compare
PP_3505 -0.6 -2.5 conserved protein of unknown function compare
PP_4964 -0.6 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_5279 -0.6 -2.1 conserved protein of unknown function compare
PP_2122 -0.6 -2.8 molybdenum cofactor biosynthesis protein B compare
PP_5007 -0.6 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1906 -0.6 -3.2 ribosomal large subunit pseudouridine synthase C compare
PP_1994 -0.6 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_1909 -0.6 -3.5 putative septum formation protein compare
PP_4131 -0.6 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4121 -0.6 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4268 -0.6 -1.0 nucleoid-associated broad specificity regulator compare
PP_5114 -0.6 -2.0 putative adenine methyltransferase compare
PP_2575 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4263 -0.6 -2.4 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5338 -0.6 -1.9 aspartate ammonia-lyase compare
PP_0065 -0.6 -2.0 NAD-binding component of TrK potassium transporter compare
PP_4803 -0.5 -3.5 D-alanyl-D-alanine carboxypeptidase compare
PP_5350 -0.5 -2.0 Transcriptional regulator, RpiR family compare
PP_0760 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_4546 -0.5 -2.8 ATP-dependent helicase HrpA compare
PP_4880 -0.5 -4.0 exoribonuclease R compare
PP_1979 -0.5 -1.8 putative Hydrolase compare
PP_4824 -0.5 -3.3 Sensor histidine kinase/response regulator compare
PP_5028 -0.5 -2.5 proline iminopeptidase compare
PP_4989 -0.5 -1.8 Protein PilJ compare
PP_4124 -0.5 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_5014 -0.5 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_5294 -0.5 -3.7 Ribonuclease PH compare
PP_2747 -0.5 -1.5 conserved protein of unknown function compare
PP_4988 -0.5 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4941 -0.5 -2.8 conserved exported protein of unknown function compare
PP_4804 -0.5 -1.4 RlpA-like lipoprotein compare
PP_4785 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4233 -0.5 -2.6 putative Oxidoreductase, small subunit compare
PP_5600 -0.5 -2.3 conserved protein of unknown function compare
PP_4129 -0.5 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4265 -0.5 -1.4 DNA-binding transcriptional dual regulator compare
PP_1265 -0.5 -2.1 conserved protein of unknown function compare
PP_2903 -0.5 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2441 -0.5 -1.8 conserved protein of unknown function compare
PP_5201 -0.5 -1.9 conserved protein of unknown function, UPF0149 family compare
PP_5717 -0.5 -1.6 conserved protein of unknown function compare
PP_1719 -0.5 -3.6 Tail-specific protease prc compare
PP_0401 -0.5 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0888 -0.5 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4724 -0.5 -1.5 Carbamoyl-phosphate synthase small chain compare
PP_0293 -0.5 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5217 -0.5 -4.2 Polyphosphate kinase compare
PP_2378 -0.5 -1.4 Fe/S biogenesis protein NfuA compare
PP_5104 -0.5 -3.4 thiazole synthase compare
PP_4722 -0.5 -2.2 Transcription elongation factor GreA compare
PP_1269 -0.5 -1.2 Universal stress protein family compare
PP_4993 -0.5 -1.9 Glutathione synthetase compare
PP_5058 -0.4 -2.9 Carboxy-terminal-processing protease compare
PP_0083 -0.4 -2.8 tryptophan synthase beta chain compare
PP_5658 -0.4 -2.5 protein of unknown function compare
PP_0963 -0.4 -1.7 putative BolA family protein compare
PP_0007 -0.4 -2.2 conserved hypothetical protein compare
PP_4528 -0.4 -1.6 conserved protein of unknown function compare
PP_3649 -0.4 -1.9 Transcriptional regulator, GntR family compare
PP_5686 -0.4 -2.0 protein of unknown function compare
PP_3339 -0.4 -1.6 conserved exported protein of unknown function compare
PP_1583 -0.4 -1.6 putative Structural protein P5 compare
PP_4684 -0.4 -2.7 conserved protein of unknown function with kinase-like domain compare
PP_5093 -0.4 -0.6 twitching motility protein compare
PP_4285 -0.4 -1.7 5-hydroxyisourate hydrolase compare
PP_1237 -0.4 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3121 -0.4 -1.8 transcriptional regulator, LysR family compare
PP_2928 -0.4 -2.9 Saccharopine dehydrogenase compare
PP_1813 -0.4 -1.2 ComEA-related protein compare
PP_0502 -0.4 -1.9 conserved protein of unknown function compare
PP_2341 -0.4 -1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0141 -0.4 -2.6 putative ABC transporter, ATP-binding protein compare
PP_1051 -0.4 -2.4 Type II secretion pathway protein XcpV compare
PP_4723 -0.4 -2.0 Carbamoyl-phosphate synthase large chain compare
PP_0214 -0.4 -2.4 4-aminobutyrate aminotransferase compare
PP_3185 -0.4 -2.4 Pet18 protein compare
PP_1658 -0.4 -1.6 conserved protein of unknown function compare
PP_3637 -0.4 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2223 -0.4 -2.9 conserved protein of unknown function compare
PP_5711 -0.4 -2.4 protein of unknown function compare
PP_5441 -0.4 -2.2 protein of unknown function compare
PP_1404 -0.4 -1.9 conserved protein of unknown function compare
PP_2929 -0.4 -3.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4814 -0.4 -1.3 ATP-dependent protease La domain protein compare
PP_4952 -0.4 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2815 -0.4 -2.7 conserved protein of unknown function compare
PP_4423 -0.4 -2.4 conserved protein of unknown function compare
PP_0850 -0.4 -2.5 Dual-specificity RNA methyltransferase RlmN compare
PP_1764 -0.4 -1.5 Phosphoglycolate phosphatase 2 compare
PP_1207 -0.4 -2.0 conserved protein of unknown function compare
PP_0910 -0.4 -2.4 conserved exported protein of unknown function compare
PP_2880 -0.4 -1.6 Transcriptional regulator, TetR family compare
PP_3759 -0.4 -2.3 Methylesterase, CheB-like compare
PP_2499 -0.4 -1.1 conserved protein of unknown function compare
PP_2802 -0.4 -2.2 Amino acid permease family protein compare
PP_2388 -0.4 -2.2 Transporter, LysE family compare
PP_4891 -0.4 -1.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1362 -0.4 -2.0 pyruvate kinase II compare
PP_1683 -0.4 -1.6 Transcriptional regulator, MarR family compare
PP_2087 -0.3 -1.7 CmpX protein compare
PP_3930 -0.3 -1.6 conserved exported protein of unknown function compare
PP_4690 -0.3 -1.6 Rieske 2Fe-2S family protein compare
PP_2088 -0.3 -1.5 RNA polymerase sigma factor SigX compare
PP_1917 -0.3 -2.7 4-amino-4-deoxychorismate lyase compare
PP_1676 -0.3 -2.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2311 -0.3 -2.3 Mg-dependent cytoplasmic DNase / RNase compare
PP_0120 -0.3 -2.6 putative zinc ABC transporter compare
PP_3191 -0.3 -2.1 putative threonine ammonia-lyase / dehydratase compare
PP_4098 -0.3 -0.7 UvrABC system protein C compare
PP_5146 -0.3 -2.6 RNA pyrophosphohydrolase compare
PP_2402 -0.3 -0.9 putative Sensor histidine kinase compare
PP_0127 -0.3 -1.3 Thiol:disulfide interchange protein compare
PP_2000 -0.3 -0.8 amidophosphoribosyl transferase compare
PP_4776 -0.3 -2.8 AsnC family transcriptional regulator compare
PP_2222 -0.3 -1.9 conserved protein of unknown function compare
PP_2136 -0.3 -1.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2304 -0.3 -2.5 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2978 -0.3 -1.9 conserved protein of unknown function compare
PP_2370 -0.3 -1.3 conserved protein of unknown function compare
PP_2475 -0.3 -2.1 Transcriptional regulator, TetR family compare
PP_0957 -0.3 -1.3 D-arabinose 5-phosphate isomerase compare
PP_5278 -0.3 -2.1 4-guanidinobutyraldehyde dehydrogenase compare
PP_4478 -0.3 -2.3 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1233 -0.3 -1.5 sulfurtransferase compare
PP_4214 -0.3 -1.6 pyoverdine biosynthesis related protein compare
PP_4213 -0.3 -1.4 putative dipeptidase compare
PP_2107 -0.3 -1.1 conserved protein of unknown function compare
PP_2737 -0.3 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2931 -0.3 -1.4 conserved protein of unknown function compare
PP_1987 -0.3 -0.8 Methlytransferase, UbiE/COQ5 family compare
PP_5313 -0.3 -1.1 DNA-binding protein HU-alpha compare
PP_1860 -0.3 -1.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_1871 -0.3 -2.0 Protease HtpX compare
PP_4875 -0.3 -1.5 conserved membrane protein of unknown function compare
PP_2169 -0.3 -1.8 tRNA-dihydrouridine synthase A compare
PP_1571 -0.3 -0.8 conserved protein of unknown function compare
PP_3964 -0.3 -2.3 transposase compare
PP_1876 -0.3 -1.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0266 -0.3 -2.3 Agmatine deiminase compare
PP_0184 -0.3 -2.4 Argininosuccinate lyase compare
PP_0653 -0.3 -0.9 conserved protein of unknown function compare
PP_5084 -0.3 -2.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2477 -0.3 -1.7 isoquinoline 1-oxidoreductase subunit alpha compare
PP_2163 -0.3 -1.7 VacJ lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms