Experiment set50S273 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_0339 -2.0 -4.6 Pyruvate dehydrogenase E1 component compare
PP_0856 -1.8 -3.4 conserved lipoprotein of unknown function compare
PP_4994 -1.8 -4.0 conserved protein of unknown function compare
PP_4999 -1.8 -1.2 dihydroorotase-like protein compare
PP_4902 -1.8 -2.9 Oligoribonuclease compare
PP_1898 -1.6 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4937 -1.5 -9.1 toluene tolerance protein compare
PP_1232 -1.5 -4.7 conserved exported protein of unknown function compare
PP_4701 -1.4 -1.8 glucose-6-phosphate isomerase compare
PP_4723 -1.4 -4.6 Carbamoyl-phosphate synthase large chain compare
PP_4700 -1.4 -2.2 pantothenate synthetase compare
PP_0393 -1.3 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0345 -1.2 -5.0 putative Heptose kinase WapP compare
PP_0127 -1.2 -3.8 Thiol:disulfide interchange protein compare
PP_4471 -1.2 -3.8 Magnesium transporter compare
PP_2378 -1.1 -2.3 Fe/S biogenesis protein NfuA compare
PP_4724 -1.0 -2.3 Carbamoyl-phosphate synthase small chain compare
PP_4874 -1.0 -1.1 50S ribosomal protein L9 compare
PP_3375 -0.9 -5.2 endonuclease I compare
PP_4204 -0.9 -3.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4379 -0.9 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5328 -0.9 -1.6 putative phosphate transport system permease protein compare
PP_4804 -0.9 -2.0 RlpA-like lipoprotein compare
PP_0833 -0.9 -1.7 queuine tRNA-ribosyltransferase compare
PP_4129 -0.9 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0401 -0.8 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_5014 -0.8 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4785 -0.8 -2.9 conserved exported protein of unknown function compare
PP_1269 -0.8 -1.8 Universal stress protein family compare
PP_4942 -0.8 -1.9 conserved protein of unknown function compare
PP_4482 -0.8 -3.6 Transcriptional regulator, AraC family compare
PP_5552 -0.8 -2.0 conserved protein of unknown function compare
PP_1214 -0.8 -2.6 putative transcriptional regulatory protein compare
PP_5095 -0.8 -1.5 pyrroline-5-carboxylate reductase compare
PP_5279 -0.8 -2.1 conserved protein of unknown function compare
PP_0346 -0.7 -5.4 putative Heptose kinase WapQ compare
PP_0513 -0.7 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0719 -0.7 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4532 -0.7 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5216 -0.7 -1.7 exopolyphosphatase compare
PP_5017 -0.7 -1.6 Sec-independent protein translocase protein TatB compare
PP_3819 -0.7 -3.8 glutathione reductase (NADPH) compare
PP_0691 -0.7 -1.6 Glutamate 5-kinase compare
PP_3243 -0.7 -2.5 Acetyltransferase, GNAT family compare
PP_4265 -0.7 -1.5 DNA-binding transcriptional dual regulator compare
PP_4782 -0.7 -3.4 Phosphomethylpyrimidine kinase compare
PP_4124 -0.7 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_2379 -0.7 -2.8 putative cytochrome oxidase biogenesis protein compare
PP_3903 -0.7 -1.5 conserved protein of unknown function compare
PP_4989 -0.7 -2.3 Protein PilJ compare
PP_1994 -0.7 -1.4 tRNA pseudouridine (38-40)synthase compare
PP_5104 -0.7 -4.7 thiazole synthase compare
PP_4271 -0.7 -1.2 conserved protein of unknown function compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_5475 -0.6 -1.5 conserved protein of unknown function compare
PP_3481 -0.6 -1.3 conserved exported protein of unknown function compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_5598 -0.6 -1.3 conserved protein of unknown function compare
PP_5201 -0.6 -2.3 conserved protein of unknown function, UPF0149 family compare
PP_4880 -0.6 -4.3 exoribonuclease R compare
PP_2857 -0.6 -1.6 conserved exported protein of unknown function compare
PP_3506 -0.6 -2.6 Magnesium chelatase, subunit ChII compare
PP_1734 -0.6 -1.9 Probable septum site-determining protein MinC compare
PP_4738 -0.6 -2.4 conserved exported protein of unknown function compare
PP_2970 -0.6 -1.7 conserved exported protein of unknown function compare
PP_0959 -0.6 -1.4 phospholipid ABC transporter compare
PP_4008 -0.6 -2.3 ATP-dependent serine protease compare
PP_0809 -0.6 -3.7 disulfide bond formation protein B compare
PP_5329 -0.6 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4966 -0.6 -1.7 transcriptional regulator of methionine metabolism compare
PP_1702 -0.6 -3.0 Recombination-associated protein RdgC compare
PP_1325 -0.6 -3.2 putative lipoprotein compare
PP_4475 -0.6 -3.7 succinylglutamate desuccinylase compare
PP_4824 -0.6 -3.5 Sensor histidine kinase/response regulator compare
PP_5580 -0.5 -0.7 protein of unknown function compare
PP_2759 -0.5 -2.1 ribose ABC transporter - ATP-binding subunit compare
PP_3102 -0.5 -2.3 conserved protein of unknown function compare
PP_0377 -0.5 -2.0 coenzyme PQQ synthesis protein D compare
PP_2341 -0.5 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0855 -0.5 -1.2 conserved protein of unknown function compare
PP_3198 -0.5 -1.1 Ferredoxin, 2Fe-2S compare
PP_5090 -0.5 -1.7 putative cell division protein compare
PP_2306 -0.5 -1.7 conserved exported protein of unknown function compare
PP_1215 -0.5 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5456 -0.5 -1.2 conserved protein of unknown function compare
PP_2530 -0.5 -1.4 conserved protein of unknown function compare
PP_2088 -0.5 -2.1 RNA polymerase sigma factor SigX compare
PP_4058 -0.5 -3.5 1,4-alpha-glucan branching enzyme compare
PP_2322 -0.5 -2.2 Major outer membrane lipoprotein compare
PP_4997 -0.5 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1294 -0.5 -2.4 molybdopterin synthase large subunit compare
PP_1553 -0.5 -1.3 conserved protein of unknown function compare
PP_0512 -0.5 -1.3 hypothetical protein compare
PP_5146 -0.5 -3.6 RNA pyrophosphohydrolase compare
PP_1233 -0.5 -2.3 sulfurtransferase compare
PP_3280 -0.5 -2.6 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_3964 -0.5 -2.7 transposase compare
PP_3762 -0.5 -2.6 Response regulator compare
PP_4131 -0.5 -2.6 NADH-quinone oxidoreductase subunit N compare
PP_4988 -0.5 -3.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0958 -0.5 -2.8 phospholipid ABC transporter ATP-binding subunit compare
PP_2307 -0.5 -1.7 conserved protein of unknown function compare
PP_0960 -0.5 -2.6 phospholipid ABC transporter binding protein compare
PP_1348 -0.5 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2247 -0.5 -1.3 putative Endoribonuclease compare
PP_0425 -0.5 -1.6 conserved protein of unknown function compare
PP_2510 -0.5 -1.3 conserved protein of unknown function compare
PP_4993 -0.5 -1.7 Glutathione synthetase compare
PP_2336 -0.5 -1.9 aconitate hydratase 1 compare
PP_3043 -0.5 -1.5 conserved protein of unknown function compare
PP_2356 -0.5 -3.5 putative Phytochrome family protein compare
PP_1664 -0.5 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_3318 -0.4 -1.3 conserved protein of unknown function compare
PP_0214 -0.4 -2.9 4-aminobutyrate aminotransferase compare
PP_1099 -0.4 -1.5 Cold shock protein CapB compare
PP_4590 -0.4 -2.8 conserved protein of unknown function compare
PP_2018 -0.4 -2.3 adhesin-associated BNR repeat protein (from data) compare
PP_1860 -0.4 -1.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_0963 -0.4 -1.9 putative BolA family protein compare
PP_4342 -0.4 -1.3 flagellar synthesis regulator, putative ATPase compare
PP_2414 -0.4 -1.2 conserved exported protein of unknown function compare
PP_4546 -0.4 -1.8 ATP-dependent helicase HrpA compare
PP_4944 -0.4 -1.7 Carbamoyltransferase compare
PP_2075 -0.4 -2.4 conserved membrane protein of unknown function compare
PP_1362 -0.4 -2.0 pyruvate kinase II compare
PP_4684 -0.4 -2.5 conserved protein of unknown function with kinase-like domain compare
PP_2219 -0.4 -1.9 conserved protein of unknown function compare
PP_2340 -0.4 -1.6 conserved protein of unknown function compare
PP_1906 -0.4 -1.8 ribosomal large subunit pseudouridine synthase C compare
PP_0086 -0.4 -1.7 conserved protein of unknown function compare
PP_0962 -0.4 -1.6 toluene-tolerance protein compare
PP_4362 -0.4 -1.7 conserved protein of unknown function compare
PP_1855 -0.4 -1.3 conserved exported protein of unknown function compare
PP_0063 -0.4 -1.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5217 -0.4 -3.7 Polyphosphate kinase compare
PP_5654 -0.4 -1.6 putative phosphotriesterase compare
PP_0961 -0.4 -2.7 toluene tolerance protein compare
PP_0948 -0.4 -1.0 Phosphocarrier protein HPr compare
PP_4941 -0.4 -2.1 conserved exported protein of unknown function compare
PP_2581 -0.4 -0.5 conserved protein of unknown function compare
PP_0232 -0.4 -0.9 ATP-binding taurine transporter subunit compare
PP_2475 -0.4 -2.0 Transcriptional regulator, TetR family compare
PP_4130 -0.4 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4529 -0.4 -1.3 conserved protein of unknown function compare
PP_5289 -0.4 -2.2 Acetylglutamate kinase compare
PP_4424 -0.4 -1.5 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5542 -0.4 -1.4 protein of unknown function compare
PP_1020 -0.4 -1.0 putative glucose-6-phosphate 1-epimerase compare
PP_4242 -0.4 -2.5 conserved protein of unknown function with Rhs repeat-associated core domain compare
PP_4964 -0.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_3098 -0.4 -0.8 conserved protein of unknown function compare
PP_2575 -0.4 -0.9 conserved exported protein of unknown function compare
PP_1193 -0.4 -1.9 conserved membrane protein of unknown function compare
PP_2332 -0.4 -2.1 conserved exported protein of unknown function compare
PP_1322 -0.4 -0.5 putative Lipoprotein compare
PP_0673 -0.4 -0.7 conserved protein of unknown function compare
PP_2624 -0.4 -1.8 conserved protein of unknown function compare
PP_2499 -0.4 -1.0 conserved protein of unknown function compare
PP_3999 -0.4 -2.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5546 -0.4 -0.9 conserved protein of unknown function compare
PP_1714 -0.4 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_0123 -0.4 -2.8 DNA polymerase I, 5 compare
PP_4693 -0.4 -1.5 RNA polymerase-binding transcription factor DksA compare
PP_5586 -0.4 -1.4 exported protein of unknown function compare
PP_0484 -0.4 -2.2 transporter of an unknown substrate compare
PP_4722 -0.4 -1.8 Transcription elongation factor GreA compare
PP_4121 -0.4 -1.9 NADH-quinone oxidoreductase subunit C/D compare
PP_2568 -0.4 -0.7 Ring-cleaving dioxygenase compare
PP_3398 -0.4 -1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1787 -0.4 -2.0 conserved protein of unknown function compare
PP_3105 -0.4 -0.7 conserved membrane protein of unknown function compare
PP_4268 -0.4 -0.6 nucleoid-associated broad specificity regulator compare
PP_5310 -0.4 -2.0 junction-specific ATP-dependent DNA helicase compare
PP_4285 -0.4 -1.7 5-hydroxyisourate hydrolase compare
PP_1583 -0.4 -1.8 putative Structural protein P5 compare
PP_0703 -0.4 -1.9 putative Transmembrane sensor compare
PP_4848 -0.4 -1.4 Curved DNA-binding protein compare
PP_2402 -0.4 -0.9 putative Sensor histidine kinase compare
PP_2747 -0.3 -0.9 conserved protein of unknown function compare
PP_1967 -0.3 -2.3 tRNA D-aminoacylase compare
PP_0794 -0.3 -1.4 1-phosphofructokinase monomer compare
PP_0945 -0.3 -1.6 conserved protein of unknown function compare
PP_2311 -0.3 -1.2 Mg-dependent cytoplasmic DNase / RNase compare
PP_1508 -0.3 -1.3 conserved protein of unknown function compare
PP_3967 -0.3 -1.8 MutT/nudix family protein compare
PP_3732 -0.3 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_1062 -0.3 -1.4 MutT/nudix family protein compare
PP_4699 -0.3 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3591 -0.3 -1.8 Delta 1-piperideine-2-carboxylate reductase compare
PP_4156 -0.3 -1.1 Transcriptional regulator, LysR family compare
PP_0293 -0.3 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2738 -0.3 -1.5 putative Transcriptional regulator compare
PP_5724 -0.3 -2.0 conserved protein of unknown function compare
PP_3679 -0.3 -1.9 conserved protein of unknown function compare
PP_3290 -0.3 -1.9 Universal stress protein family compare
PP_5575 -0.3 -1.1 conserved protein of unknown function compare
PP_2671 -0.3 -2.3 Sensor histidine kinase compare
PP_3277 -0.3 -1.7 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_2820 -0.3 -1.0 HTH-type transcriptional regulator nfxB compare
PP_0775 -0.3 -0.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms