Experiment set50S271 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_1733 -3.0 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1898 -2.8 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4902 -2.6 -2.5 Oligoribonuclease compare
PP_5328 -2.6 -1.8 putative phosphate transport system permease protein compare
PP_0735 -1.7 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_3411 -1.7 -2.3 conserved protein of unknown function compare
PP_4724 -1.7 -2.5 Carbamoyl-phosphate synthase small chain compare
PP_0593 -1.6 -1.8 putative ribosome-binding factor compare
PP_4723 -1.6 -3.6 Carbamoyl-phosphate synthase large chain compare
PP_0393 -1.6 -3.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4999 -1.5 -1.0 dihydroorotase-like protein compare
PP_0339 -1.5 -3.3 Pyruvate dehydrogenase E1 component compare
PP_5248 -1.5 -2.4 putative hydrolase compare
PP_4204 -1.4 -4.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5338 -1.4 -3.6 aspartate ammonia-lyase compare
PP_4993 -1.4 -3.4 Glutathione synthetase compare
PP_1198 -1.3 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4262 -1.3 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4726 -1.3 -2.7 Chaperone protein DnaJ compare
PP_0856 -1.3 -2.4 conserved lipoprotein of unknown function compare
PP_1366 -1.3 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_1734 -1.2 -2.6 Probable septum site-determining protein MinC compare
PP_0888 -1.2 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_2379 -1.1 -3.4 putative cytochrome oxidase biogenesis protein compare
PP_1232 -1.1 -3.7 conserved exported protein of unknown function compare
PP_2575 -1.1 -2.0 conserved exported protein of unknown function compare
PP_2307 -1.1 -2.0 conserved protein of unknown function compare
PP_0691 -1.1 -1.9 Glutamate 5-kinase compare
PP_4008 -1.1 -3.2 ATP-dependent serine protease compare
PP_4156 -1.0 -2.3 Transcriptional regulator, LysR family compare
PP_4880 -1.0 -5.8 exoribonuclease R compare
PP_0377 -1.0 -2.6 coenzyme PQQ synthesis protein D compare
PP_0063 -1.0 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5327 -1.0 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_5216 -1.0 -1.8 exopolyphosphatase compare
PP_5329 -1.0 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1362 -0.9 -2.8 pyruvate kinase II compare
PP_1764 -0.9 -2.0 Phosphoglycolate phosphatase 2 compare
PP_1217 -0.9 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2864 -0.9 -2.2 conserved protein of unknown function compare
PP_t12 -0.9 -1.3 tRNA-Thr compare
PP_3726 -0.8 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_4546 -0.8 -2.8 ATP-dependent helicase HrpA compare
PP_4895 -0.8 -1.9 tRNA dimethylallyltransferase compare
PP_1097 -0.8 -1.2 Methionine--tRNA ligase compare
PP_4136 -0.8 -1.3 Transcriptional regulator, LuxR family compare
PP_4196 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4994 -0.8 -2.1 conserved protein of unknown function compare
PP_3098 -0.8 -1.2 conserved protein of unknown function compare
PP_4738 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4700 -0.8 -1.2 pantothenate synthetase compare
PP_4517 -0.8 -1.6 conserved protein of unknown function compare
PP_0832 -0.8 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4937 -0.8 -3.9 toluene tolerance protein compare
PP_0959 -0.8 -1.9 phospholipid ABC transporter compare
PP_0293 -0.8 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4102 -0.7 -1.9 conserved protein of unknown function compare
PP_5393 -0.7 -1.4 putative metal-binding chaperone compare
PP_0425 -0.7 -2.7 conserved protein of unknown function compare
PP_4271 -0.7 -1.1 conserved protein of unknown function compare
PP_2402 -0.7 -1.4 putative Sensor histidine kinase compare
PP_0833 -0.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_2189 -0.7 -2.3 conserved protein of unknown function compare
PP_1729 -0.7 -0.9 conserved protein of unknown function compare
PP_3819 -0.7 -3.4 glutathione reductase (NADPH) compare
PP_5717 -0.7 -1.8 conserved protein of unknown function compare
PP_2070 -0.7 -1.2 Transcriptional regulator, AraC family compare
PP_2525 -0.7 -1.5 conserved protein of unknown function compare
PP_4941 -0.7 -2.6 conserved exported protein of unknown function compare
PP_1186 -0.7 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_2903 -0.7 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2773 -0.7 -1.3 conserved protein of unknown function compare
PP_3946 -0.6 -1.2 HTH-type transcriptional repressor NicR compare
PP_1912 -0.6 -2.1 Phosphate acyltransferase compare
PP_4263 -0.6 -1.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2526 -0.6 -1.8 conserved membrane protein of unknown function compare
PP_5090 -0.6 -1.9 putative cell division protein compare
PP_1731 -0.6 -1.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2356 -0.6 -4.0 putative Phytochrome family protein compare
PP_4874 -0.6 -1.0 50S ribosomal protein L9 compare
PP_5100 -0.6 -1.7 dITP/XTP pyrophosphatase compare
PP_0719 -0.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5095 -0.6 -1.2 pyrroline-5-carboxylate reductase compare
PP_1020 -0.6 -1.7 putative glucose-6-phosphate 1-epimerase compare
PP_5331 -0.6 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_0048 -0.6 -1.2 conserved protein of unknown function compare
PP_2764 -0.6 -1.8 FMN reductase (NADPH) compare
PP_4045 -0.6 -1.4 conserved protein of unknown function compare
PP_1583 -0.6 -2.5 putative Structural protein P5 compare
PP_4804 -0.6 -1.1 RlpA-like lipoprotein compare
PP_1237 -0.6 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4054 -0.6 -1.9 conserved protein of unknown function compare
PP_4785 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4004 -0.6 -1.9 DNA translocase FtsK compare
PP_2196 -0.6 -0.9 agmatinase compare
PP_5654 -0.6 -1.2 putative phosphotriesterase compare
PP_1268 -0.6 -1.3 putative HtrA suppressor protein sohA compare
PP_4213 -0.6 -1.4 putative dipeptidase compare
PP_4684 -0.6 -2.8 conserved protein of unknown function with kinase-like domain compare
PP_2516 -0.6 -2.8 HTH-type transcriptional regulator GalR compare
PP_2503 -0.6 -1.8 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2747 -0.6 -1.2 conserved protein of unknown function compare
PP_1468 -0.6 -1.5 Tyrosine recombinase XerD compare
PP_2653 -0.5 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4124 -0.5 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_1528 -0.5 -1.1 conserved protein of unknown function compare
PP_0794 -0.5 -1.9 1-phosphofructokinase monomer compare
PP_3198 -0.5 -1.4 Ferredoxin, 2Fe-2S compare
PP_5686 -0.5 -2.5 protein of unknown function compare
PP_1216 -0.5 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5028 -0.5 -2.2 proline iminopeptidase compare
PP_3061 -0.5 -2.1 conserved protein of unknown function compare
PP_2835 -0.5 -1.7 putative oxidoreductase compare
PP_1553 -0.5 -1.1 conserved protein of unknown function compare
PP_1697 -0.5 -1.7 transcriptional regulator, GntR family compare
PP_2514 -0.5 -1.3 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_3541 -0.5 -1.4 Transporter, MgtC family compare
PP_0809 -0.5 -3.0 disulfide bond formation protein B compare
PP_4268 -0.5 -1.0 nucleoid-associated broad specificity regulator compare
PP_4471 -0.5 -1.5 Magnesium transporter compare
PP_3509 -0.5 -1.4 Glyoxalase family protein compare
PP_4529 -0.5 -2.0 conserved protein of unknown function compare
PP_2475 -0.5 -1.8 Transcriptional regulator, TetR family compare
PP_3522 -0.5 -1.6 conserved protein of unknown function compare
PP_4214 -0.5 -1.9 pyoverdine biosynthesis related protein compare
PP_5279 -0.5 -1.7 conserved protein of unknown function compare
PP_0195 -0.5 -1.6 conserved protein of unknown function compare
PP_4917 -0.5 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2894 -0.5 -1.6 conserved protein of unknown function compare
PP_1646 -0.5 -2.0 putative Thioredoxin compare
PP_4207 -0.5 -1.3 conserved protein of unknown function compare
PP_0001 -0.5 -0.9 probable chromosome-partitioning protein compare
PP_3415 -0.5 -2.1 Transcriptional regulator, LacI family compare
PP_4273 -0.5 -1.0 Transcriptional regulator, MerR family compare
PP_2000 -0.5 -0.7 amidophosphoribosyl transferase compare
PP_3013 -0.5 -2.0 conserved protein of unknown function compare
PP_1322 -0.5 -0.8 putative Lipoprotein compare
PP_0855 -0.5 -1.5 conserved protein of unknown function compare
PP_4451 -0.5 -2.6 conserved protein of unknown function compare
PP_4379 -0.5 -1.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1678 -0.5 -1.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4532 -0.5 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5684 -0.5 -2.7 protein of unknown function compare
PP_5001 -0.5 -1.3 protease HslVU, ATPase component compare
PP_0022 -0.5 -0.8 hypothetical protein compare
PP_5600 -0.5 -1.3 conserved protein of unknown function compare
PP_0065 -0.5 -1.7 NAD-binding component of TrK potassium transporter compare
PP_4944 -0.5 -1.5 Carbamoyltransferase compare
PP_3309 -0.5 -2.6 promiscuous aromatic aldehyde dehydrogenase, FAD-binding subunit compare
PP_2455 -0.5 -2.3 ribose ABC transporter - ATP-binding subunit compare
PP_1930 -0.5 -2.0 arsenic resistance transcriptional regulator compare
PP_1128 -0.5 -1.4 OmpA family protein compare
PP_2848 -0.5 -1.5 urease accessory protein compare
PP_1269 -0.5 -0.9 Universal stress protein family compare
PP_4961 -0.5 -1.3 putative Lipoprotein compare
PP_1562 -0.5 -1.3 putative Phage terminase, small subunit compare
PP_5225 -0.5 -1.1 frataxin compare
PP_3378 -0.5 -0.6 putative 2-ketogluconokinase compare
PP_2854 -0.5 -2.1 conserved exported protein of unknown function compare
PP_1906 -0.4 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_3597 -0.4 -1.8 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1628 -0.4 -2.0 NMN amidohydrolase compare
PP_5652 -0.4 -1.2 conserved protein of unknown function, phage origin compare
PP_2859 -0.4 -2.3 conserved protein of unknown function compare
PP_4707 -0.4 -1.5 OsmY-related protein compare
PP_2299 -0.4 -1.4 Trigger factor compare
PP_4782 -0.4 -1.5 Phosphomethylpyrimidine kinase compare
PP_3902 -0.4 -1.1 conserved protein of unknown function compare
PP_5217 -0.4 -3.9 Polyphosphate kinase compare
PP_2640 -0.4 -1.3 Acetyltransferase, GNAT family compare
PP_1215 -0.4 -0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1922 -0.4 -1.8 conserved protein of unknown function compare
PP_2737 -0.4 -0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4988 -0.4 -2.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4632 -0.4 -2.4 dihydrofolate reductase / dihydromonapterin reductase compare
PP_3258 -0.4 -1.3 conserved protein of unknown function compare
PP_3328 -0.4 -0.7 putative Ring-cleaving dioxygenase compare
PP_0513 -0.4 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3014 -0.4 -1.3 conserved exported protein of unknown function compare
PP_0214 -0.4 -2.4 4-aminobutyrate aminotransferase compare
PP_1825 -0.4 -1.6 conserved exported protein of unknown function compare
PP_5339 -0.4 -1.9 transcriptional regulator, ornithine utilization compare
PP_3591 -0.4 -1.8 Delta 1-piperideine-2-carboxylate reductase compare
PP_3027 -0.4 -2.0 conserved protein of unknown function compare
PP_3017 -0.4 -1.5 O6-methylguanine-DNA methyltransferase compare
PP_2336 -0.4 -1.4 aconitate hydratase 1 compare
PP_5619 -0.4 -1.6 protein of unknown function compare
PP_1353 -0.4 -1.6 conserved membrane protein of unknown function compare
PP_2121 -0.4 -0.8 putative Lipoprotein compare
PP_3232 -0.4 -1.7 Acetyltransferase, GNAT family compare
PP_2232 -0.4 -1.6 XRE family transcriptional regulator compare
PP_2023 -0.4 -1.7 Glutathione S-transferase family protein compare
PP_1961 -0.4 -2.1 conserved protein of unknown function compare
PP_1629 -0.4 -2.0 Protein RecA compare
PP_4942 -0.4 -1.0 conserved protein of unknown function compare
PP_1778 -0.4 -1.8 Lipopolysaccharide ABC export system, permease protein compare
PP_3037 -0.4 -1.1 C4-type zinc finger protein, DksA/TraR family compare
PP_4226 -0.4 -1.1 conserved protein of unknown function compare
PP_1048 -0.4 -1.2 putative protein secretion protein for export compare
PP_2815 -0.4 -1.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms