Experiment set50S235 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PP_0833 -3.1 -3.0 queuine tRNA-ribosyltransferase compare
PP_4902 -2.7 -3.2 Oligoribonuclease compare
PP_0345 -2.4 -7.3 putative Heptose kinase WapP compare
PP_4937 -2.4 -9.6 toluene tolerance protein compare
PP_1898 -2.3 -3.4 MotA/TolQ/ExbB proton channel family protein compare
PP_0856 -2.2 -3.4 conserved lipoprotein of unknown function compare
PP_5328 -2.1 -2.1 putative phosphate transport system permease protein compare
PP_4122 -1.9 -3.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2820 -1.9 -2.5 HTH-type transcriptional regulator nfxB compare
PP_1232 -1.8 -6.5 conserved exported protein of unknown function compare
PP_0339 -1.8 -4.3 Pyruvate dehydrogenase E1 component compare
PP_1384 -1.8 -11.3 Probable efflux pump outer membrane protein TtgC compare
PP_4994 -1.7 -4.3 conserved protein of unknown function compare
PP_4126 -1.7 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_3946 -1.6 -2.9 HTH-type transcriptional repressor NicR compare
PP_5095 -1.6 -3.0 pyrroline-5-carboxylate reductase compare
PP_0346 -1.5 -9.4 putative Heptose kinase WapQ compare
PP_2379 -1.5 -6.7 putative cytochrome oxidase biogenesis protein compare
PP_4700 -1.4 -2.1 pantothenate synthetase compare
PP_4124 -1.4 -5.6 NADH-quinone oxidoreductase subunit G compare
PP_4129 -1.4 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0063 -1.3 -4.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4131 -1.3 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_5350 -1.3 -4.4 Transcriptional regulator, RpiR family compare
PP_4121 -1.2 -5.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5329 -1.2 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4204 -1.2 -4.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2356 -1.1 -8.7 putative Phytochrome family protein compare
PP_5104 -1.1 -7.7 thiazole synthase compare
PP_1385 -1.1 -9.8 Probable efflux pump membrane transporter TtgB compare
PP_4782 -1.1 -5.1 Phosphomethylpyrimidine kinase compare
PP_5748 -1.1 -2.1 cytochrome c heme lyase subunit compare
PP_4880 -1.1 -7.0 exoribonuclease R compare
PP_0719 -1.1 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0834 -1.0 -1.7 Sec translocation complex subunit YajC compare
PP_4120 -1.0 -4.0 NADH-quinone oxidoreductase subunit B compare
PP_4999 -1.0 -0.9 dihydroorotase-like protein compare
PP_4342 -1.0 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_4722 -1.0 -5.0 Transcription elongation factor GreA compare
PP_0855 -1.0 -2.2 conserved protein of unknown function compare
PP_5017 -1.0 -2.0 Sec-independent protein translocase protein TatB compare
PP_1348 -0.9 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5000 -0.9 -2.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4824 -0.9 -5.6 Sensor histidine kinase/response regulator compare
PP_4475 -0.9 -6.3 succinylglutamate desuccinylase compare
PP_0962 -0.9 -2.7 toluene-tolerance protein compare
PP_2402 -0.9 -2.7 putative Sensor histidine kinase compare
PP_2163 -0.9 -6.4 VacJ lipoprotein compare
PP_0960 -0.9 -5.5 phospholipid ABC transporter binding protein compare
PP_4804 -0.9 -2.1 RlpA-like lipoprotein compare
PP_5338 -0.9 -3.5 aspartate ammonia-lyase compare
PP_4130 -0.9 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4828 -0.9 -1.3 Precorrin-8X methylmutase compare
PP_1598 -0.9 -4.1 regulatory intramembrane protein RIP zinc protease compare
PP_t10 -0.8 -1.6 tRNA-Pro compare
PP_5337 -0.8 -4.4 LysR family transcriptional regulator compare
PP_1386 -0.8 -5.8 Probable efflux pump periplasmic linker TtgA compare
PP_0888 -0.8 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2903 -0.8 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4379 -0.8 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5317 -0.8 -1.9 Probable chorismate pyruvate-lyase compare
PP_5327 -0.8 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_4895 -0.8 -2.3 tRNA dimethylallyltransferase compare
PP_0961 -0.8 -5.0 toluene tolerance protein compare
PP_0832 -0.7 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2203 -0.7 -1.3 conserved protein of unknown function compare
PP_5146 -0.7 -4.9 RNA pyrophosphohydrolase compare
PP_3649 -0.7 -2.9 Transcriptional regulator, GntR family compare
PP_1906 -0.7 -3.8 ribosomal large subunit pseudouridine synthase C compare
PP_0119 -0.7 -3.5 putative zinc uptake regulation protein ZUR compare
PP_1233 -0.7 -2.9 sulfurtransferase compare
PP_3365 -0.7 -1.5 Acetolactate synthase compare
PP_2378 -0.7 -1.7 Fe/S biogenesis protein NfuA compare
PP_5216 -0.7 -1.4 exopolyphosphatase compare
PP_0725 -0.7 -4.2 conserved hypothetical TPR repeat protein compare
PP_1635 -0.7 -1.5 DNA-binding response regulator compare
PP_4892 -0.7 -4.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1362 -0.7 -2.9 pyruvate kinase II compare
PP_1269 -0.7 -1.5 Universal stress protein family compare
PP_0959 -0.7 -2.5 phospholipid ABC transporter compare
PP_4723 -0.7 -2.9 Carbamoyl-phosphate synthase large chain compare
PP_4785 -0.7 -2.8 conserved exported protein of unknown function compare
PP_5686 -0.7 -2.5 protein of unknown function compare
PP_4268 -0.7 -1.4 nucleoid-associated broad specificity regulator compare
PP_1871 -0.7 -3.6 Protease HtpX compare
PP_1237 -0.6 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4726 -0.6 -2.1 Chaperone protein DnaJ compare
PP_0547 -0.6 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4961 -0.6 -1.9 putative Lipoprotein compare
PP_5058 -0.6 -3.6 Carboxy-terminal-processing protease compare
PP_4891 -0.6 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3105 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_0120 -0.6 -3.4 putative zinc ABC transporter compare
PP_2152 -0.6 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_3198 -0.6 -2.0 Ferredoxin, 2Fe-2S compare
PP_0958 -0.6 -3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_4988 -0.6 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4941 -0.6 -3.0 conserved exported protein of unknown function compare
PP_5279 -0.6 -2.8 conserved protein of unknown function compare
PP_4874 -0.6 -1.0 50S ribosomal protein L9 compare
PP_4482 -0.6 -2.9 Transcriptional regulator, AraC family compare
PP_3819 -0.6 -3.4 glutathione reductase (NADPH) compare
PP_1322 -0.6 -1.0 putative Lipoprotein compare
PP_5346 -0.6 -3.8 pyruvate carboxylase subunit B compare
PP_5090 -0.6 -1.7 putative cell division protein compare
PP_2354 -0.5 -4.6 Sensory box histidine kinase/response regulator compare
PP_3477 -0.5 -2.6 Putative secretion type II protein related to protein G compare
PP_4008 -0.5 -2.6 ATP-dependent serine protease compare
PP_1876 -0.5 -1.9 putative ATP/GTP-binding protein of the AAA+ family compare
PP_t29 -0.5 -1.7 tRNA-Ala compare
PP_3481 -0.5 -2.3 conserved exported protein of unknown function compare
PP_3474 -0.5 -2.9 putative Curli fiber protein CsgE compare
PP_0916 -0.5 -2.2 Amino acid transporter LysE compare
PP_0540 -0.5 -3.3 conserved inner membrane protein compare
PP_2972 -0.5 -1.2 conserved protein of unknown function compare
PP_1860 -0.5 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_3926 -0.5 -1.3 short-chain dehydrogenase compare
PP_0512 -0.5 -1.5 hypothetical protein compare
PP_3726 -0.5 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_2370 -0.5 -2.0 conserved protein of unknown function compare
PP_1381 -0.5 -1.2 4-carboxymuconolactone decarboxylase compare
PP_4793 -0.5 -1.1 conserved protein of unknown function compare
PP_3505 -0.5 -1.3 conserved protein of unknown function compare
PP_4724 -0.5 -1.5 Carbamoyl-phosphate synthase small chain compare
PP_0760 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_1366 -0.5 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4118 -0.5 -4.3 putative Membrane protein compare
PP_4570 -0.5 -4.1 conserved protein of unknown function compare
PP_5294 -0.5 -3.2 Ribonuclease PH compare
PP_3903 -0.5 -1.4 conserved protein of unknown function compare
PP_1553 -0.5 -1.8 conserved protein of unknown function compare
PP_1083 -0.5 -2.5 (2Fe-2S)-binding protein compare
PP_5063 -0.5 -2.9 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_1428 -0.5 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_0910 -0.5 -3.4 conserved exported protein of unknown function compare
PP_5674 -0.5 -1.8 conserved protein of unknown function compare
PP_1128 -0.5 -2.1 OmpA family protein compare
PP_0118 -0.5 -3.7 zinc import ATP-binding protein compare
PP_0913 -0.5 -3.5 conserved exported protein of unknown function compare
PP_2332 -0.5 -2.3 conserved exported protein of unknown function compare
PP_1522 -0.5 -2.6 major cold shock protein compare
PP_2304 -0.5 -3.4 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_4684 -0.5 -2.7 conserved protein of unknown function with kinase-like domain compare
PP_5084 -0.5 -3.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_3555 -0.5 -2.3 putative Transmembrane sensor compare
PP_1097 -0.5 -1.1 Methionine--tRNA ligase compare
PP_5348 -0.5 -3.4 Transcriptional regulator, LysR family compare
PP_0872 -0.5 -2.6 Peptide chain release factor 3 compare
PP_2720 -0.4 -1.0 conserved protein of unknown function compare
PP_4957 -0.4 -2.2 conserved protein of unknown function compare
PP_t11 -0.4 -1.5 tRNA-Lys compare
PP_4362 -0.4 -1.9 conserved protein of unknown function compare
PP_4591 -0.4 -1.9 Ribonuclease D compare
PP_1417 -0.4 -2.9 putative Tricarboxylate transport protein TctB compare
PP_4254 -0.4 -1.5 conserved protein of unknown function compare
PP_2759 -0.4 -2.0 ribose ABC transporter - ATP-binding subunit compare
PP_0963 -0.4 -1.8 putative BolA family protein compare
PP_2253 -0.4 -1.5 Transcriptional regulator, GntR family compare
PP_1621 -0.4 -2.1 Protein-L-isoaspartate O-methyltransferase compare
PP_2932 -0.4 -3.0 Amidase family protein compare
PP_4575 -0.4 -2.0 Urea amidolyase-related protein compare
PP_0634 -0.4 -2.5 Fimbrial protein compare
PP_2299 -0.4 -1.4 Trigger factor compare
PP_4982 -0.4 -2.5 putative cytochrome b561, iron-regulated compare
PP_1020 -0.4 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_3098 -0.4 -1.0 conserved protein of unknown function compare
PP_2255 -0.4 -3.0 C4-dicarboxylate transport protein compare
PP_1325 -0.4 -2.7 putative lipoprotein compare
PP_2136 -0.4 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2745 -0.4 -1.4 Universal stress protein family compare
PP_2320 -0.4 -3.3 conserved exported protein of unknown function compare
PP_1066 -0.4 -1.7 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4184 -0.4 -3.0 branched chain amino acid transporter compare
PP_2223 -0.4 -3.1 conserved protein of unknown function compare
PP_1695 -0.4 -2.7 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1204 -0.4 -3.0 putative Lipoprotein compare
PP_2747 -0.4 -1.1 conserved protein of unknown function compare
PP_4479 -0.4 -2.3 arginine N-succinyltransferase, subunit beta compare
PP_0111 -0.4 -2.5 Electron transport protein SCO1/SenC compare
PP_5162 -0.4 -2.0 conserved exported protein of unknown function compare
PP_5427 -0.4 -1.9 conserved exported protein of unknown function compare
PP_4859 -0.4 -2.4 Transcriptional regulator, TetR family compare
PP_1994 -0.4 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_4836 -0.4 -1.9 conserved exported protein of unknown function compare
PP_2302 -0.4 -2.2 DNA-binding, ATP-dependent protease compare
PP_1979 -0.4 -1.5 putative Hydrolase compare
PP_4993 -0.4 -1.5 Glutathione synthetase compare
PP_1697 -0.4 -1.9 transcriptional regulator, GntR family compare
PP_4925 -0.4 -1.4 conserved protein of unknown function compare
PP_0117 -0.4 -2.1 Zn(2+) ABC transporter - permease subunit compare
PP_4215 -0.4 -1.8 pyoverdine biosynthesis related protein compare
PP_2348 -0.4 -1.7 Sensor histidine kinase compare
PP_1218 -0.4 -1.8 putative acyl-CoA thioesterase compare
PP_4387 -0.4 -1.5 conserved exported protein of unknown function compare
PP_0594 -0.4 -3.1 Transcriptional regulator, TetR family compare
PP_3637 -0.4 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5217 -0.4 -3.3 Polyphosphate kinase compare
PP_5619 -0.4 -1.3 protein of unknown function compare
PP_1422 -0.4 -2.6 conserved protein of unknown function compare
PP_4738 -0.4 -1.6 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms