Experiment set50S234 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PP_4902 -2.0 -3.2 Oligoribonuclease compare
PP_0833 -1.8 -2.6 queuine tRNA-ribosyltransferase compare
PP_4999 -1.7 -1.1 dihydroorotase-like protein compare
PP_5328 -1.6 -2.3 putative phosphate transport system permease protein compare
PP_0846 -1.5 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_0888 -1.5 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_0339 -1.3 -3.8 Pyruvate dehydrogenase E1 component compare
PP_0719 -1.3 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2379 -1.3 -4.2 putative cytochrome oxidase biogenesis protein compare
PP_0856 -1.3 -3.2 conserved lipoprotein of unknown function compare
PP_4994 -1.2 -3.4 conserved protein of unknown function compare
PP_5216 -1.2 -2.4 exopolyphosphatase compare
PP_1232 -1.1 -5.1 conserved exported protein of unknown function compare
PP_1994 -1.1 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_4937 -1.1 -6.6 toluene tolerance protein compare
PP_4700 -1.1 -1.8 pantothenate synthetase compare
PP_1898 -1.1 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_2378 -1.1 -3.3 Fe/S biogenesis protein NfuA compare
PP_5008 -1.0 -2.1 Poly granule-associated protein compare
PP_5329 -1.0 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4993 -1.0 -3.6 Glutathione synthetase compare
PP_5748 -1.0 -2.1 cytochrome c heme lyase subunit compare
PP_4008 -0.9 -4.1 ATP-dependent serine protease compare
PP_4204 -0.9 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2337 -0.9 -2.8 aconitate isomerase compare
PP_2402 -0.8 -2.4 putative Sensor histidine kinase compare
PP_0630 -0.8 -1.5 DNA gyrase inhibitor YacG compare
PP_2820 -0.8 -2.8 HTH-type transcriptional regulator nfxB compare
PP_3551 -0.8 -1.3 DNA-binding response regulator, LuxR family compare
PP_0293 -0.8 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4874 -0.8 -1.6 50S ribosomal protein L9 compare
PP_3519 -0.8 -1.2 putative Lipoprotein compare
PP_5338 -0.8 -3.0 aspartate ammonia-lyase compare
PP_4642 -0.8 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_4121 -0.7 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4824 -0.7 -4.2 Sensor histidine kinase/response regulator compare
PP_3539 -0.7 -1.7 putative Transcriptional regulator compare
PP_0735 -0.7 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_3312 -0.7 -1.9 putative Heat shock protein compare
PP_1979 -0.7 -3.2 putative Hydrolase compare
PP_4724 -0.7 -1.8 Carbamoyl-phosphate synthase small chain compare
PP_1553 -0.7 -1.1 conserved protein of unknown function compare
PP_3903 -0.7 -1.7 conserved protein of unknown function compare
PP_2899 -0.7 -2.0 conserved exported protein of unknown function compare
PP_5017 -0.7 -1.5 Sec-independent protein translocase protein TatB compare
PP_4129 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0512 -0.6 -1.8 hypothetical protein compare
PP_5546 -0.6 -1.4 conserved protein of unknown function compare
PP_3819 -0.6 -3.8 glutathione reductase (NADPH) compare
PP_4952 -0.6 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1198 -0.6 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4988 -0.6 -3.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3460 -0.6 -1.5 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4880 -0.6 -4.0 exoribonuclease R compare
PP_3098 -0.6 -1.4 conserved protein of unknown function compare
PP_1381 -0.6 -1.3 4-carboxymuconolactone decarboxylase compare
PP_4124 -0.6 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_4379 -0.6 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1214 -0.6 -1.7 putative transcriptional regulatory protein compare
PP_5295 -0.6 -2.0 conserved protein of unknown function compare
PP_0346 -0.6 -4.1 putative Heptose kinase WapQ compare
PP_0135 -0.6 -3.1 conserved exported protein of unknown function compare
PP_5350 -0.6 -2.2 Transcriptional regulator, RpiR family compare
PP_1348 -0.6 -3.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3840 -0.6 -1.5 conserved protein of unknown function compare
PP_2313 -0.6 -0.9 conserved membrane protein of unknown function compare
PP_4120 -0.6 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_2121 -0.6 -2.0 putative Lipoprotein compare
PP_0963 -0.6 -1.4 putative BolA family protein compare
PP_4814 -0.6 -2.0 ATP-dependent protease La domain protein compare
PP_0007 -0.5 -2.6 conserved hypothetical protein compare
PP_4131 -0.5 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_4223 -0.5 -2.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4944 -0.5 -1.8 Carbamoyltransferase compare
PP_4942 -0.5 -1.4 conserved protein of unknown function compare
PP_1142 -0.5 -1.1 conserved protein of unknown function compare
PP_5359 -0.5 -1.3 CobW/P47K family protein compare
PP_0855 -0.5 -1.7 conserved protein of unknown function compare
PP_5058 -0.5 -3.4 Carboxy-terminal-processing protease compare
PP_t12 -0.5 -1.0 tRNA-Thr compare
PP_4207 -0.5 -2.3 conserved protein of unknown function compare
PP_4130 -0.5 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3258 -0.5 -1.1 conserved protein of unknown function compare
PP_0725 -0.5 -3.0 conserved hypothetical TPR repeat protein compare
PP_1178 -0.5 -2.2 conserved protein of unknown function compare
PP_5146 -0.5 -3.7 RNA pyrophosphohydrolase compare
PP_0556 -0.5 -2.6 Acetoin catabolism protein compare
PP_1128 -0.5 -1.5 OmpA family protein compare
PP_0063 -0.5 -2.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1362 -0.5 -2.7 pyruvate kinase II compare
PP_4286 -0.5 -3.1 allantoinase compare
PP_1845 -0.5 -2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_4891 -0.5 -2.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0345 -0.5 -1.8 putative Heptose kinase WapP compare
PP_1503 -0.5 -2.4 conserved protein of unknown function compare
PP_3198 -0.5 -1.0 Ferredoxin, 2Fe-2S compare
PP_0214 -0.5 -2.9 4-aminobutyrate aminotransferase compare
PP_4296 -0.5 -0.9 conserved exported protein of unknown function compare
PP_3649 -0.5 -1.9 Transcriptional regulator, GntR family compare
PP_4546 -0.5 -1.9 ATP-dependent helicase HrpA compare
PP_2147 -0.5 -2.1 conserved exported protein of unknown function compare
PP_0653 -0.5 -1.3 conserved protein of unknown function compare
PP_0120 -0.5 -2.7 putative zinc ABC transporter compare
PP_0401 -0.5 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_3802 -0.5 -1.9 putative Cation ABC transporter, ATP-binding protein compare
PP_4126 -0.5 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_2122 -0.5 -1.9 molybdenum cofactor biosynthesis protein B compare
PP_3052 -0.4 -1.0 conserved protein of unknown function compare
PP_3902 -0.4 -1.3 conserved protein of unknown function compare
PP_0306 -0.4 -2.0 conserved protein of unknown function compare
PP_4699 -0.4 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0628 -0.4 -2.2 conserved protein of unknown function compare
PP_4009 -0.4 -1.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_5294 -0.4 -2.7 Ribonuclease PH compare
PP_2123 -0.4 -3.0 molybdenum::molybdopterin ligase compare
PP_1764 -0.4 -1.5 Phosphoglycolate phosphatase 2 compare
PP_4782 -0.4 -1.9 Phosphomethylpyrimidine kinase compare
PP_4726 -0.4 -1.5 Chaperone protein DnaJ compare
PP_1344 -0.4 -0.7 conserved protein of unknown function compare
PP_1808 -0.4 -1.8 glucose-6-phosphate isomerase compare
PP_3916 -0.4 -1.6 conserved protein of unknown function compare
PP_0497 -0.4 -2.3 Transcriptional regulator, Cro/CI family compare
PP_2144 -0.4 -1.8 Transcriptional regulator, TetR family compare
PP_2304 -0.4 -3.0 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2581 -0.4 -1.4 conserved protein of unknown function compare
PP_4787 -0.4 -1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3824 -0.4 -1.3 conserved exported protein of unknown function compare
PP_5217 -0.4 -3.6 Polyphosphate kinase compare
PP_3512 -0.4 -2.5 conserved membrane protein of unknown function compare
PP_4285 -0.4 -1.6 5-hydroxyisourate hydrolase compare
PP_1598 -0.4 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_2615 -0.4 -1.3 hemolysin-coregulated protein compare
PP_1062 -0.4 -1.8 MutT/nudix family protein compare
PP_1099 -0.4 -1.5 Cold shock protein CapB compare
PP_0250 -0.4 -0.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0065 -0.4 -1.8 NAD-binding component of TrK potassium transporter compare
PP_4343 -0.4 -2.3 Flagellar biosynthesis protein FlhF compare
PP_5100 -0.4 -1.5 dITP/XTP pyrophosphatase compare
PP_1054 -0.4 -1.4 Type II secretion pathway protein XcpZ compare
PP_1635 -0.4 -1.3 DNA-binding response regulator compare
PP_4941 -0.4 -1.7 conserved exported protein of unknown function compare
PP_1347 -0.4 -2.2 Glutathione S-transferase family protein compare
PP_0266 -0.4 -2.6 Agmatine deiminase compare
PP_4073 -0.4 -1.6 conserved exported protein of unknown function compare
PP_3190 -0.4 -1.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4471 -0.4 -1.5 Magnesium transporter compare
PP_2762 -0.4 -2.5 acyl-CoA dehydrogenase/oxidase family protein compare
PP_5168 -0.4 -1.7 sulfate/thiosulfate import ATP-binding protein compare
PP_1892 -0.4 -1.7 conserved protein of unknown function compare
PP_1374 -0.4 -2.2 conserved protein of unknown function compare
PP_5114 -0.4 -1.1 putative adenine methyltransferase compare
PP_2280 -0.4 -1.4 conserved protein of unknown function compare
PP_2219 -0.4 -1.8 conserved protein of unknown function compare
PP_1986 -0.4 -1.5 3-isopropylmalate dehydratase small subunit compare
PP_5289 -0.4 -2.0 Acetylglutamate kinase compare
PP_4532 -0.4 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4478 -0.4 -2.4 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_3040 -0.4 -1.0 Pyocin R2_PP, holin compare
PP_1034 -0.4 -2.8 multicopper oxidase compare
PP_0848 -0.4 -0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1233 -0.4 -1.3 sulfurtransferase compare
PP_1379 -0.4 -2.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_2345 -0.4 -1.7 conserved exported protein of unknown function compare
PP_3359 -0.4 -1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_1512 -0.4 -1.5 conserved protein of unknown function compare
PP_4684 -0.4 -2.2 conserved protein of unknown function with kinase-like domain compare
PP_2976 -0.4 -0.9 putative transposase compare
PP_5045 -0.4 -1.9 tRNA sulfurtransferase compare
PP_5104 -0.4 -2.6 thiazole synthase compare
PP_5608 -0.4 -2.1 putative exported protein compare
PP_2172 -0.4 -2.2 conserved exported protein of unknown function compare
PP_4328 -0.4 -1.5 conserved protein of unknown function compare
PP_1871 -0.4 -1.8 Protease HtpX compare
PP_5096 -0.4 -1.9 putative factor involved in shape determination compare
PP_5236 -0.4 -2.7 conserved protein of unknown function compare
PP_2509 -0.3 -1.6 conserved protein of unknown function compare
PP_4482 -0.3 -1.7 Transcriptional regulator, AraC family compare
PP_2031 -0.3 -1.6 conserved protein of unknown function compare
PP_3434 -0.3 -1.0 conserved protein of unknown function compare
PP_2088 -0.3 -1.8 RNA polymerase sigma factor SigX compare
PP_1824 -0.3 -1.2 Smr domain protein compare
PP_0872 -0.3 -1.9 Peptide chain release factor 3 compare
PP_0834 -0.3 -1.2 Sec translocation complex subunit YajC compare
PP_2309 -0.3 -0.8 conserved protein of unknown function compare
PP_4917 -0.3 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0082 -0.3 -1.8 tryptophan synthase alpha chain compare
PP_5055 -0.3 -1.2 Sulfurtransferase compare
PP_0258 -0.3 -1.6 regulator of murein cross-linking compare
PP_2633 -0.3 -1.2 conserved protein of unknown function compare
PP_1083 -0.3 -1.6 (2Fe-2S)-binding protein compare
PP_4723 -0.3 -1.6 Carbamoyl-phosphate synthase large chain compare
PP_0874 -0.3 -0.8 conserved protein of unknown function compare
PP_0908 -0.3 -2.2 conserved exported protein of unknown function compare
PP_0495 -0.3 -2.2 type 1 L-asparaginase compare
PP_3682 -0.3 -2.1 conserved protein of unknown function compare
PP_2511 -0.3 -1.6 conserved protein of unknown function compare
PP_0126 -0.3 -1.3 Cytochrome c4 compare
PP_1479 -0.3 -1.4 HicB protein compare
PP_3481 -0.3 -0.9 conserved exported protein of unknown function compare
PP_5654 -0.3 -1.1 putative phosphotriesterase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms