Experiment set50S233 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PP_0833 -2.0 -3.3 queuine tRNA-ribosyltransferase compare
PP_4902 -2.0 -3.4 Oligoribonuclease compare
PP_0339 -1.6 -4.9 Pyruvate dehydrogenase E1 component compare
PP_4700 -1.6 -2.7 pantothenate synthetase compare
PP_4937 -1.4 -9.5 toluene tolerance protein compare
PP_0393 -1.4 -4.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0856 -1.3 -3.3 conserved lipoprotein of unknown function compare
PP_1232 -1.2 -5.0 conserved exported protein of unknown function compare
PP_5329 -1.2 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2379 -1.2 -4.6 putative cytochrome oxidase biogenesis protein compare
PP_5328 -1.1 -2.1 putative phosphate transport system permease protein compare
PP_1898 -1.1 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5216 -1.1 -2.5 exopolyphosphatase compare
PP_5017 -1.1 -2.3 Sec-independent protein translocase protein TatB compare
PP_4993 -1.0 -4.1 Glutathione synthetase compare
PP_0274 -1.0 -2.9 putative transcriptional regulator containing HTH domain compare
PP_4994 -1.0 -2.7 conserved protein of unknown function compare
PP_5095 -1.0 -2.4 pyrroline-5-carboxylate reductase compare
PP_4199 -1.0 -2.2 putative Lipoprotein compare
PP_4204 -1.0 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4471 -0.9 -3.0 Magnesium transporter compare
PP_4379 -0.9 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4120 -0.9 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_5338 -0.9 -3.5 aspartate ammonia-lyase compare
PP_0855 -0.9 -2.3 conserved protein of unknown function compare
PP_0345 -0.8 -3.3 putative Heptose kinase WapP compare
PP_0063 -0.8 -3.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2820 -0.8 -2.2 HTH-type transcriptional regulator nfxB compare
PP_3198 -0.8 -3.0 Ferredoxin, 2Fe-2S compare
PP_3819 -0.8 -5.4 glutathione reductase (NADPH) compare
PP_1912 -0.8 -4.5 Phosphate acyltransferase compare
PP_4941 -0.7 -3.8 conserved exported protein of unknown function compare
PP_1362 -0.7 -3.7 pyruvate kinase II compare
PP_3105 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_4723 -0.7 -3.3 Carbamoyl-phosphate synthase large chain compare
PP_0119 -0.7 -2.9 putative zinc uptake regulation protein ZUR compare
PP_1293 -0.7 -1.5 molybdopterin synthase small subunit compare
PP_0719 -0.7 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3903 -0.7 -1.5 conserved protein of unknown function compare
PP_2087 -0.7 -2.3 CmpX protein compare
PP_1387 -0.6 -3.3 Probable HTH-type transcriptional regulator TtgR compare
PP_4008 -0.6 -3.2 ATP-dependent serine protease compare
PP_1045 -0.6 -1.5 Type II secretion pathway protein XcpP compare
PP_0834 -0.6 -2.0 Sec translocation complex subunit YajC compare
PP_5701 -0.6 -2.3 conserved protein of unknown function compare
PP_0346 -0.6 -3.6 putative Heptose kinase WapQ compare
PP_3649 -0.6 -2.6 Transcriptional regulator, GntR family compare
PP_2378 -0.6 -2.0 Fe/S biogenesis protein NfuA compare
PP_4722 -0.6 -3.1 Transcription elongation factor GreA compare
PP_4989 -0.6 -2.6 Protein PilJ compare
PP_4124 -0.6 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_5028 -0.6 -2.4 proline iminopeptidase compare
PP_t10 -0.6 -1.5 tRNA-Pro compare
PP_0832 -0.6 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4782 -0.6 -3.1 Phosphomethylpyrimidine kinase compare
PP_3098 -0.6 -1.4 conserved protein of unknown function compare
PP_1310 -0.6 -2.3 conserved hypothetical protein compare
PP_5225 -0.6 -1.5 frataxin compare
PP_2144 -0.6 -2.8 Transcriptional regulator, TetR family compare
PP_4785 -0.6 -3.1 conserved exported protein of unknown function compare
PP_2903 -0.6 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4803 -0.5 -3.6 D-alanyl-D-alanine carboxypeptidase compare
PP_4342 -0.5 -1.6 flagellar synthesis regulator, putative ATPase compare
PP_5014 -0.5 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_3938 -0.5 -2.0 conserved protein of unknown function compare
PP_4684 -0.5 -3.1 conserved protein of unknown function with kinase-like domain compare
PP_4880 -0.5 -3.8 exoribonuclease R compare
PP_0872 -0.5 -3.1 Peptide chain release factor 3 compare
PP_2631 -0.5 -1.7 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5294 -0.5 -3.5 Ribonuclease PH compare
PP_4957 -0.5 -2.2 conserved protein of unknown function compare
PP_1575 -0.5 -1.9 conserved protein of unknown function compare
PP_0065 -0.5 -2.0 NAD-binding component of TrK potassium transporter compare
PP_4156 -0.5 -2.4 Transcriptional regulator, LysR family compare
PP_4482 -0.5 -1.9 Transcriptional regulator, AraC family compare
PP_1553 -0.5 -1.2 conserved protein of unknown function compare
PP_3902 -0.5 -2.2 conserved protein of unknown function compare
PP_4130 -0.5 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0303 -0.5 -2.8 dehydrocarnitine cleavage enzyme compare
PP_4226 -0.5 -2.0 conserved protein of unknown function compare
PP_4532 -0.5 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2624 -0.5 -2.3 conserved protein of unknown function compare
PP_4988 -0.5 -2.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0120 -0.5 -3.6 putative zinc ABC transporter compare
PP_4874 -0.5 -0.9 50S ribosomal protein L9 compare
PP_2222 -0.5 -2.5 conserved protein of unknown function compare
PP_5658 -0.5 -1.4 protein of unknown function compare
PP_2000 -0.5 -1.0 amidophosphoribosyl transferase compare
PP_1909 -0.5 -2.5 putative septum formation protein compare
PP_1269 -0.5 -1.2 Universal stress protein family compare
PP_5337 -0.5 -2.5 LysR family transcriptional regulator compare
PP_2223 -0.5 -3.6 conserved protein of unknown function compare
PP_5571 -0.4 -1.3 conserved protein of unknown function compare
PP_4546 -0.4 -2.1 ATP-dependent helicase HrpA compare
PP_4131 -0.4 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_0377 -0.4 -1.5 coenzyme PQQ synthesis protein D compare
PP_0307 -0.4 -2.3 conserved exported protein of unknown function compare
PP_4824 -0.4 -2.8 Sensor histidine kinase/response regulator compare
PP_4126 -0.4 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_1860 -0.4 -2.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_0725 -0.4 -2.9 conserved hypothetical TPR repeat protein compare
PP_2932 -0.4 -3.1 Amidase family protein compare
PP_1099 -0.4 -1.5 Cold shock protein CapB compare
PP_5659 -0.4 -2.1 protein of unknown function compare
PP_3374 -0.4 -2.3 conserved protein of unknown function compare
PP_4724 -0.4 -1.3 Carbamoyl-phosphate synthase small chain compare
PP_3094 -0.4 -1.7 conserved exported protein of unknown function compare
PP_1871 -0.4 -2.4 Protease HtpX compare
PP_5279 -0.4 -2.1 conserved protein of unknown function compare
PP_4121 -0.4 -2.2 NADH-quinone oxidoreductase subunit C/D compare
PP_5121 -0.4 -2.1 conserved exported protein of unknown function compare
PP_0150 -0.4 -1.9 conserved exported protein of unknown function compare
PP_2320 -0.4 -3.3 conserved exported protein of unknown function compare
PP_2530 -0.4 -1.8 conserved protein of unknown function compare
PP_1598 -0.4 -2.0 regulatory intramembrane protein RIP zinc protease compare
PP_5453 -0.4 -1.1 conserved protein of unknown function compare
PP_2337 -0.4 -1.6 aconitate isomerase compare
PP_0850 -0.4 -2.7 Dual-specificity RNA methyltransferase RlmN compare
PP_5236 -0.4 -3.0 conserved protein of unknown function compare
PP_0118 -0.4 -2.9 zinc import ATP-binding protein compare
PP_0962 -0.4 -1.5 toluene-tolerance protein compare
PP_4739 -0.4 -1.7 conserved protein of unknown function compare
PP_2203 -0.4 -1.1 conserved protein of unknown function compare
PP_2304 -0.4 -3.0 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_1328 -0.4 -0.9 Protein MraZ compare
PP_2759 -0.4 -1.7 ribose ABC transporter - ATP-binding subunit compare
PP_4875 -0.4 -2.4 conserved membrane protein of unknown function compare
PP_4215 -0.4 -2.1 pyoverdine biosynthesis related protein compare
PP_4697 -0.4 -2.1 poly(A) polymerase compare
PP_5084 -0.4 -3.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5217 -0.4 -3.5 Polyphosphate kinase compare
PP_3762 -0.4 -2.3 Response regulator compare
PP_2880 -0.4 -1.3 Transcriptional regulator, TetR family compare
PP_5146 -0.4 -3.1 RNA pyrophosphohydrolase compare
PP_3505 -0.4 -1.2 conserved protein of unknown function compare
PP_1008 -0.4 -1.6 RNA polymerase subunit sigma-24 compare
PP_4907 -0.4 -1.9 Thiosulfate sulfurtransferase compare
PP_0425 -0.4 -2.1 conserved protein of unknown function compare
PP_3919 -0.4 -2.0 conserved protein of unknown function compare
PP_2884 -0.4 -2.3 XRE family transcriptional regulator compare
PP_2449 -0.4 -2.3 conserved protein of unknown function compare
PP_4964 -0.4 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_5505 -0.4 -1.3 conserved transmembrane protein of unknown function compare
PP_3829 -0.4 -2.1 Molybdenum transport system permease protein ModB compare
PP_2712 -0.4 -1.3 conserved exported protein of unknown function compare
PP_0760 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_1128 -0.4 -1.6 OmpA family protein compare
PP_2136 -0.4 -1.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3411 -0.4 -1.0 conserved protein of unknown function compare
PP_1690 -0.4 -1.7 conserved protein of unknown function compare
PP_4925 -0.4 -1.8 conserved protein of unknown function compare
PP_0963 -0.4 -1.2 putative BolA family protein compare
PP_5327 -0.4 -1.4 putative phosphate ABC transporter, permease subunit compare
PP_5168 -0.4 -1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_4418 -0.4 -2.1 conserved protein of unknown function compare
PP_2088 -0.4 -1.3 RNA polymerase sigma factor SigX compare
PP_1719 -0.4 -2.8 Tail-specific protease prc compare
PP_4930 -0.4 -1.8 putative small multidrug resistance protein compare
PP_1384 -0.4 -2.7 Probable efflux pump outer membrane protein TtgC compare
PP_1268 -0.4 -1.0 putative HtrA suppressor protein sohA compare
PP_1309 -0.4 -2.5 conserved exported protein of unknown function compare
PP_2254 -0.3 -2.4 Transcriptional regulator, GntR family compare
PP_5437 -0.3 -1.8 protein of unknown function compare
PP_0127 -0.3 -1.2 Thiol:disulfide interchange protein compare
PP_2610 -0.3 -1.9 conserved protein of unknown function compare
PP_2219 -0.3 -1.8 conserved protein of unknown function compare
PP_2046 -0.3 -2.0 Transcriptional regulator, LysR family compare
PP_1204 -0.3 -2.5 putative Lipoprotein compare
PP_2402 -0.3 -1.3 putative Sensor histidine kinase compare
PP_1922 -0.3 -2.0 conserved protein of unknown function compare
PP_2615 -0.3 -1.2 hemolysin-coregulated protein compare
PP_4826 -0.3 -2.5 Precorrin-3B C17-methyltransferase compare
PP_0908 -0.3 -2.3 conserved exported protein of unknown function compare
PP_0502 -0.3 -1.9 conserved protein of unknown function compare
PP_5594 -0.3 -1.3 conserved protein of unknown function compare
PP_5528 -0.3 -1.2 conserved protein of unknown function compare
PP_4590 -0.3 -2.3 conserved protein of unknown function compare
PP_5007 -0.3 -0.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4213 -0.3 -1.1 putative dipeptidase compare
PP_5500 -0.3 -1.5 protein of unknown function compare
PP_1096 -0.3 -0.8 putative electron transport complex protein compare
PP_2226 -0.3 -2.3 putative K(+)/H(+) antiporter subunit F compare
PP_5575 -0.3 -1.0 conserved protein of unknown function compare
PP_1892 -0.3 -1.5 conserved protein of unknown function compare
PP_1825 -0.3 -1.5 conserved exported protein of unknown function compare
PP_3555 -0.3 -2.3 putative Transmembrane sensor compare
PP_1637 -0.3 -2.5 Transcriptional regulator, LysR family compare
PP_5SB -0.3 -1.8 5S ribosomal RNA compare
PP_2950 -0.3 -1.5 conserved protein of unknown function compare
PP_0794 -0.3 -1.4 1-phosphofructokinase monomer compare
PP_1906 -0.3 -1.9 ribosomal large subunit pseudouridine synthase C compare
PP_0151 -0.3 -1.4 conserved exported protein of unknown function compare
PP_0852 -0.3 -1.8 Transcriptional regulator, Cro/CI family compare
PP_0235 -0.3 -1.6 Peroxidase compare
PP_5000 -0.3 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_4263 -0.3 -1.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3353 -0.3 -1.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_1994 -0.3 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_0888 -0.3 -0.8 Photosynthetic apparatus regulatory protein RegA compare
PP_5674 -0.3 -1.0 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms