Experiment set50S228 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_4994 -4.2 -6.3 conserved protein of unknown function compare
PP_1898 -3.9 -3.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4937 -3.5 -11.1 toluene tolerance protein compare
PP_4902 -2.6 -3.5 Oligoribonuclease compare
PP_0339 -2.5 -5.1 Pyruvate dehydrogenase E1 component compare
PP_4126 -2.1 -3.0 NADH-quinone oxidoreductase subunit I compare
PP_1384 -2.1 -11.6 Probable efflux pump outer membrane protein TtgC compare
PP_0345 -2.1 -9.2 putative Heptose kinase WapP compare
PP_0833 -1.9 -3.3 queuine tRNA-ribosyltransferase compare
PP_1385 -1.9 -16.3 Probable efflux pump membrane transporter TtgB compare
PP_0346 -1.8 -12.2 putative Heptose kinase WapQ compare
PP_0856 -1.7 -3.9 conserved lipoprotein of unknown function compare
PP_5328 -1.7 -2.9 putative phosphate transport system permease protein compare
PP_0063 -1.6 -6.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1386 -1.6 -9.1 Probable efflux pump periplasmic linker TtgA compare
PP_2402 -1.5 -3.5 putative Sensor histidine kinase compare
PP_4782 -1.4 -6.7 Phosphomethylpyrimidine kinase compare
PP_1232 -1.4 -6.1 conserved exported protein of unknown function compare
PP_2379 -1.3 -5.9 putative cytochrome oxidase biogenesis protein compare
PP_2820 -1.3 -1.9 HTH-type transcriptional regulator nfxB compare
PP_2378 -1.2 -3.5 Fe/S biogenesis protein NfuA compare
PP_5216 -1.2 -2.2 exopolyphosphatase compare
PP_4722 -1.2 -6.1 Transcription elongation factor GreA compare
PP_5104 -1.1 -8.0 thiazole synthase compare
PP_4475 -1.1 -7.3 succinylglutamate desuccinylase compare
PP_5338 -1.0 -4.4 aspartate ammonia-lyase compare
PP_1233 -1.0 -4.6 sulfurtransferase compare
PP_1362 -1.0 -4.8 pyruvate kinase II compare
PP_4130 -1.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4204 -1.0 -3.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4124 -1.0 -5.0 NADH-quinone oxidoreductase subunit G compare
PP_4129 -0.9 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1428 -0.9 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_1553 -0.9 -1.6 conserved protein of unknown function compare
PP_5329 -0.9 -1.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4482 -0.9 -4.4 Transcriptional regulator, AraC family compare
PP_0959 -0.8 -2.6 phospholipid ABC transporter compare
PP_4824 -0.8 -5.4 Sensor histidine kinase/response regulator compare
PP_5350 -0.8 -3.6 Transcriptional regulator, RpiR family compare
PP_0834 -0.8 -2.8 Sec translocation complex subunit YajC compare
PP_0127 -0.8 -2.9 Thiol:disulfide interchange protein compare
PP_4941 -0.8 -4.2 conserved exported protein of unknown function compare
PP_4120 -0.8 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_2144 -0.8 -3.3 Transcriptional regulator, TetR family compare
PP_4785 -0.8 -4.3 conserved exported protein of unknown function compare
PP_t29 -0.8 -1.6 tRNA-Ala compare
PP_4724 -0.8 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -0.8 -3.6 Carbamoyl-phosphate synthase large chain compare
PP_4804 -0.8 -2.1 RlpA-like lipoprotein compare
PP_3649 -0.8 -3.0 Transcriptional regulator, GntR family compare
PP_0274 -0.8 -2.6 putative transcriptional regulator containing HTH domain compare
PP_5327 -0.8 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0735 -0.7 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_2356 -0.7 -5.8 putative Phytochrome family protein compare
PP_2163 -0.7 -5.3 VacJ lipoprotein compare
PP_1348 -0.7 -4.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0855 -0.7 -2.5 conserved protein of unknown function compare
PP_0293 -0.7 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3819 -0.7 -4.9 glutathione reductase (NADPH) compare
PP_5000 -0.7 -2.3 peptidase component of the ATP-dependent HslVU protease compare
PP_3902 -0.7 -2.0 conserved protein of unknown function compare
PP_4999 -0.7 -0.8 dihydroorotase-like protein compare
PP_4362 -0.7 -3.2 conserved protein of unknown function compare
PP_4891 -0.7 -3.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4268 -0.7 -1.9 nucleoid-associated broad specificity regulator compare
PP_0065 -0.7 -3.4 NAD-binding component of TrK potassium transporter compare
PP_0832 -0.7 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5317 -0.7 -1.9 Probable chorismate pyruvate-lyase compare
PP_4700 -0.7 -1.5 pantothenate synthetase compare
PP_0960 -0.7 -4.4 phospholipid ABC transporter binding protein compare
PP_4342 -0.7 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_0961 -0.7 -5.2 toluene tolerance protein compare
PP_4961 -0.7 -1.6 putative Lipoprotein compare
PP_4131 -0.7 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_4942 -0.7 -2.1 conserved protein of unknown function compare
PP_2747 -0.6 -2.0 conserved protein of unknown function compare
PP_t10 -0.6 -2.2 tRNA-Pro compare
PP_1813 -0.6 -2.5 ComEA-related protein compare
PP_4993 -0.6 -2.4 Glutathione synthetase compare
PP_5337 -0.6 -3.7 LysR family transcriptional regulator compare
PP_2331 -0.6 -3.6 conserved membrane protein of unknown function compare
PP_2299 -0.6 -2.5 Trigger factor compare
PP_0962 -0.6 -2.2 toluene-tolerance protein compare
PP_1912 -0.6 -3.3 Phosphate acyltransferase compare
PP_5310 -0.6 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_4988 -0.6 -3.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0725 -0.6 -4.1 conserved hypothetical TPR repeat protein compare
PP_0958 -0.6 -4.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0887 -0.6 -3.8 Sensor histidine kinase compare
PP_1099 -0.6 -2.1 Cold shock protein CapB compare
PP_4892 -0.6 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1198 -0.6 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3375 -0.6 -4.0 endonuclease I compare
PP_3726 -0.6 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_1598 -0.6 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_4008 -0.5 -2.5 ATP-dependent serine protease compare
PP_4004 -0.5 -2.6 DNA translocase FtsK compare
PP_5028 -0.5 -3.1 proline iminopeptidase compare
PP_1045 -0.5 -1.0 Type II secretion pathway protein XcpP compare
PP_2348 -0.5 -2.5 Sensor histidine kinase compare
PP_4793 -0.5 -2.1 conserved protein of unknown function compare
PP_3105 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_3938 -0.5 -1.4 conserved protein of unknown function compare
PP_4285 -0.5 -2.3 5-hydroxyisourate hydrolase compare
PP_1325 -0.5 -3.9 putative lipoprotein compare
PP_4697 -0.5 -2.6 poly(A) polymerase compare
PP_2475 -0.5 -2.8 Transcriptional regulator, TetR family compare
PP_2302 -0.5 -2.5 DNA-binding, ATP-dependent protease compare
PP_5058 -0.5 -2.9 Carboxy-terminal-processing protease compare
PP_2307 -0.5 -1.9 conserved protein of unknown function compare
PP_4214 -0.5 -2.7 pyoverdine biosynthesis related protein compare
PP_5095 -0.5 -1.4 pyrroline-5-carboxylate reductase compare
PP_4504 -0.5 -1.7 conserved exported protein of unknown function compare
PP_2203 -0.5 -1.2 conserved protein of unknown function compare
PP_2880 -0.5 -2.1 Transcriptional regulator, TetR family compare
PP_0319 -0.5 -1.6 conserved protein of unknown function compare
PP_0393 -0.5 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5017 -0.5 -1.3 Sec-independent protein translocase protein TatB compare
PP_1871 -0.5 -2.7 Protease HtpX compare
PP_3924 -0.5 -2.4 conserved protein of unknown function compare
PP_1999 -0.5 -1.7 membrane protein required for colicin V production compare
PP_4546 -0.5 -2.2 ATP-dependent helicase HrpA compare
PP_4570 -0.5 -3.8 conserved protein of unknown function compare
PP_1204 -0.5 -3.5 putative Lipoprotein compare
PP_3164 -0.5 -1.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5575 -0.4 -1.8 conserved protein of unknown function compare
PP_3730 -0.4 -0.9 Transcriptional regulatory protein AruR compare
PP_4929 -0.4 -2.5 Transcriptional regulator, LysR family compare
PP_3312 -0.4 -1.4 putative Heat shock protein compare
PP_2624 -0.4 -2.4 conserved protein of unknown function compare
PP_2740 -0.4 -1.4 Transcriptional regulator, MerR family compare
PP_3971 -0.4 -1.2 conserved protein of unknown function compare
PP_4989 -0.4 -1.9 Protein PilJ compare
PP_5146 -0.4 -3.0 RNA pyrophosphohydrolase compare
PP_1994 -0.4 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_3903 -0.4 -1.2 conserved protein of unknown function compare
PP_2354 -0.4 -3.5 Sensory box histidine kinase/response regulator compare
PP_5311 -0.4 -3.4 putative signal transduction protein compare
PP_4895 -0.4 -1.4 tRNA dimethylallyltransferase compare
PP_0809 -0.4 -3.1 disulfide bond formation protein B compare
PP_0653 -0.4 -1.3 conserved protein of unknown function compare
PP_4591 -0.4 -2.0 Ribonuclease D compare
PP_2088 -0.4 -2.0 RNA polymerase sigma factor SigX compare
PP_1734 -0.4 -1.5 Probable septum site-determining protein MinC compare
PP_0872 -0.4 -2.6 Peptide chain release factor 3 compare
PP_0035 -0.4 -2.1 putative bactoprenol-linked glycose transferase compare
PP_0119 -0.4 -2.1 putative zinc uptake regulation protein ZUR compare
PP_4121 -0.4 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1237 -0.4 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1733 -0.4 -1.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4803 -0.4 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PP_3144 -0.4 -3.0 L-serine dehydratase compare
PP_3481 -0.4 -1.7 conserved exported protein of unknown function compare
PP_1225 -0.4 -2.5 7-carboxy-7-deazaguanine synthase compare
PP_0703 -0.4 -2.2 putative Transmembrane sensor compare
PP_2903 -0.4 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_t11 -0.4 -1.5 tRNA-Lys compare
PP_3102 -0.4 -2.0 conserved protein of unknown function compare
PP_4379 -0.4 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2592 -0.4 -1.7 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_4699 -0.4 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0292 -0.4 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4880 -0.4 -3.2 exoribonuclease R compare
PP_0002 -0.4 -2.9 probable chromosome partition protein compare
PP_0850 -0.4 -2.5 Dual-specificity RNA methyltransferase RlmN compare
PP_4738 -0.4 -1.5 conserved exported protein of unknown function compare
PP_0377 -0.4 -1.3 coenzyme PQQ synthesis protein D compare
PP_4213 -0.4 -1.7 putative dipeptidase compare
PP_0760 -0.4 -2.2 conserved membrane protein of unknown function compare
PP_1034 -0.4 -3.3 multicopper oxidase compare
PP_2189 -0.4 -1.7 conserved protein of unknown function compare
PP_1187 -0.4 -3.1 sensor protein compare
PP_0003 -0.4 -2.0 16S RNA methyltransferase compare
PP_0913 -0.4 -2.9 conserved exported protein of unknown function compare
PP_5084 -0.4 -3.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2510 -0.4 -1.2 conserved protein of unknown function compare
PP_4874 -0.4 -0.9 50S ribosomal protein L9 compare
PP_2138 -0.4 -2.4 conserved protein of unknown function compare
PP_1066 -0.4 -1.9 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0852 -0.4 -1.9 Transcriptional regulator, Cro/CI family compare
PP_1322 -0.4 -0.8 putative Lipoprotein compare
PP_1943 -0.4 -2.7 formyltetrahydrofolate deformylase compare
PP_2330 -0.4 -2.0 conserved protein of unknown function compare
PP_1226 -0.4 -2.5 pre-queuosine 0 synthase compare
PP_2927 -0.4 -2.1 conserved protein of unknown function compare
PP_2223 -0.4 -3.0 conserved protein of unknown function compare
PP_2222 -0.4 -2.1 conserved protein of unknown function compare
PP_0691 -0.4 -1.1 Glutamate 5-kinase compare
PP_1860 -0.4 -1.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_5014 -0.4 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1756 -0.4 -1.4 conserved exported protein of unknown function compare
PP_5528 -0.4 -0.8 conserved protein of unknown function compare
PP_5045 -0.4 -1.5 tRNA sulfurtransferase compare
PP_0214 -0.4 -2.3 4-aminobutyrate aminotransferase compare
PP_1690 -0.4 -1.6 conserved protein of unknown function compare
PP_4997 -0.4 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3411 -0.4 -1.0 conserved protein of unknown function compare
PP_1294 -0.4 -1.7 molybdopterin synthase large subunit compare
PP_4726 -0.4 -1.4 Chaperone protein DnaJ compare
PP_4045 -0.4 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms