Experiment set50S225 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_0856 -2.3 -4.9 conserved lipoprotein of unknown function compare
PP_0833 -2.2 -3.9 queuine tRNA-ribosyltransferase compare
PP_4804 -1.9 -3.9 RlpA-like lipoprotein compare
PP_1898 -1.8 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4902 -1.8 -3.1 Oligoribonuclease compare
PP_4994 -1.8 -4.4 conserved protein of unknown function compare
PP_4723 -1.6 -6.3 Carbamoyl-phosphate synthase large chain compare
PP_4937 -1.6 -8.5 toluene tolerance protein compare
PP_1232 -1.6 -7.4 conserved exported protein of unknown function compare
PP_0339 -1.6 -5.0 Pyruvate dehydrogenase E1 component compare
PP_4700 -1.5 -2.8 pantothenate synthetase compare
PP_4724 -1.4 -3.5 Carbamoyl-phosphate synthase small chain compare
PP_0691 -1.2 -3.2 Glutamate 5-kinase compare
PP_5328 -1.2 -2.5 putative phosphate transport system permease protein compare
PP_5216 -1.1 -3.0 exopolyphosphatase compare
PP_4126 -1.1 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_4941 -1.1 -6.0 conserved exported protein of unknown function compare
PP_3946 -1.1 -2.5 HTH-type transcriptional repressor NicR compare
PP_3903 -1.1 -3.6 conserved protein of unknown function compare
PP_4204 -1.0 -4.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3649 -1.0 -3.4 Transcriptional regulator, GntR family compare
PP_2378 -1.0 -3.1 Fe/S biogenesis protein NfuA compare
PP_0345 -1.0 -5.3 putative Heptose kinase WapP compare
PP_4120 -0.9 -3.8 NADH-quinone oxidoreductase subunit B compare
PP_4471 -0.9 -3.2 Magnesium transporter compare
PP_4895 -0.9 -2.8 tRNA dimethylallyltransferase compare
PP_0401 -0.8 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5017 -0.8 -2.2 Sec-independent protein translocase protein TatB compare
PP_0065 -0.8 -4.1 NAD-binding component of TrK potassium transporter compare
PP_4880 -0.7 -5.8 exoribonuclease R compare
PP_0346 -0.7 -5.8 putative Heptose kinase WapQ compare
PP_1468 -0.7 -3.0 Tyrosine recombinase XerD compare
PP_3726 -0.7 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_0735 -0.7 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_3375 -0.7 -5.1 endonuclease I compare
PP_2379 -0.7 -3.7 putative cytochrome oxidase biogenesis protein compare
PP_5100 -0.7 -2.4 dITP/XTP pyrophosphatase compare
PP_4993 -0.7 -2.8 Glutathione synthetase compare
PP_5338 -0.7 -3.3 aspartate ammonia-lyase compare
PP_4942 -0.7 -2.5 conserved protein of unknown function compare
PP_4988 -0.7 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4121 -0.7 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_5000 -0.7 -2.2 peptidase component of the ATP-dependent HslVU protease compare
PP_0962 -0.7 -3.2 toluene-tolerance protein compare
PP_5610 -0.7 -2.2 protein of unknown function compare
PP_4124 -0.7 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_5652 -0.7 -2.2 conserved protein of unknown function, phage origin compare
PP_4475 -0.7 -4.9 succinylglutamate desuccinylase compare
PP_5331 -0.6 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4782 -0.6 -3.0 Phosphomethylpyrimidine kinase compare
PP_4722 -0.6 -3.9 Transcription elongation factor GreA compare
PP_1362 -0.6 -3.2 pyruvate kinase II compare
PP_1994 -0.6 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4482 -0.6 -3.5 Transcriptional regulator, AraC family compare
PP_2999 -0.6 -1.4 Glyoxalase family protein compare
PP_0377 -0.6 -2.4 coenzyme PQQ synthesis protein D compare
PP_4787 -0.6 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1987 -0.6 -2.3 Methlytransferase, UbiE/COQ5 family compare
PP_4004 -0.6 -3.0 DNA translocase FtsK compare
PP_4964 -0.6 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4008 -0.6 -3.0 ATP-dependent serine protease compare
PP_4944 -0.6 -2.0 Carbamoyltransferase compare
PP_4129 -0.6 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3819 -0.6 -4.0 glutathione reductase (NADPH) compare
PP_5327 -0.6 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_0293 -0.6 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2402 -0.6 -1.8 putative Sensor histidine kinase compare
PP_0832 -0.6 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5441 -0.6 -1.9 protein of unknown function compare
PP_4271 -0.6 -1.2 conserved protein of unknown function compare
PP_5575 -0.6 -2.1 conserved protein of unknown function compare
PP_5028 -0.6 -3.3 proline iminopeptidase compare
PP_1632 -0.6 -1.8 conserved protein of unknown function compare
PP_0673 -0.6 -1.4 conserved protein of unknown function compare
PP_3105 -0.5 -1.7 conserved membrane protein of unknown function compare
PP_0214 -0.5 -3.8 4-aminobutyrate aminotransferase compare
PP_4989 -0.5 -2.2 Protein PilJ compare
PP_1269 -0.5 -1.4 Universal stress protein family compare
PP_1217 -0.5 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5104 -0.5 -3.8 thiazole synthase compare
PP_0809 -0.5 -4.1 disulfide bond formation protein B compare
PP_3505 -0.5 -2.0 conserved protein of unknown function compare
PP_1678 -0.5 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4546 -0.5 -2.8 ATP-dependent helicase HrpA compare
PP_1764 -0.5 -1.9 Phosphoglycolate phosphatase 2 compare
PP_0919 -0.5 -2.6 conserved protein of unknown function compare
PP_2820 -0.5 -1.7 HTH-type transcriptional regulator nfxB compare
PP_4379 -0.5 -2.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0063 -0.5 -2.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4130 -0.5 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1906 -0.5 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_4102 -0.5 -2.9 conserved protein of unknown function compare
PP_3532 -0.5 -1.6 Transcriptional regulator, AsnC family compare
PP_5542 -0.5 -2.9 protein of unknown function compare
PP_3902 -0.5 -1.4 conserved protein of unknown function compare
PP_4131 -0.5 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_5225 -0.5 -1.5 frataxin compare
PP_2738 -0.5 -2.5 putative Transcriptional regulator compare
PP_0119 -0.5 -2.0 putative zinc uptake regulation protein ZUR compare
PP_4925 -0.5 -2.2 conserved protein of unknown function compare
PP_5456 -0.5 -0.8 conserved protein of unknown function compare
PP_1553 -0.5 -2.0 conserved protein of unknown function compare
PP_0725 -0.4 -3.2 conserved hypothetical TPR repeat protein compare
PP_1128 -0.4 -1.5 OmpA family protein compare
PP_1943 -0.4 -3.2 formyltetrahydrofolate deformylase compare
PP_4824 -0.4 -3.0 Sensor histidine kinase/response regulator compare
PP_0393 -0.4 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2880 -0.4 -1.5 Transcriptional regulator, TetR family compare
PP_2653 -0.4 -2.3 Transcriptional regulator, Cro/CI family compare
PP_5217 -0.4 -3.9 Polyphosphate kinase compare
PP_2976 -0.4 -1.1 putative transposase compare
PP_1702 -0.4 -2.1 Recombination-associated protein RdgC compare
PP_0123 -0.4 -3.4 DNA polymerase I, 5 compare
PP_2299 -0.4 -2.2 Trigger factor compare
PP_2894 -0.4 -2.2 conserved protein of unknown function compare
PP_0007 -0.4 -1.4 conserved hypothetical protein compare
PP_2054 -0.4 -2.3 putative DNA-binding transcriptional regulator compare
PP_5146 -0.4 -2.8 RNA pyrophosphohydrolase compare
PP_1294 -0.4 -2.6 molybdopterin synthase large subunit compare
PP_1734 -0.4 -1.7 Probable septum site-determining protein MinC compare
PP_4156 -0.4 -1.4 Transcriptional regulator, LysR family compare
PP_2900 -0.4 -1.3 conserved protein of unknown function compare
PP_1055 -0.4 -1.2 Type II secretion pathway protein GspN compare
PP_5486 -0.4 -1.3 conserved protein of unknown function compare
PP_5294 -0.4 -3.1 Ribonuclease PH compare
PP_1384 -0.4 -3.2 Probable efflux pump outer membrane protein TtgC compare
PP_2356 -0.4 -3.3 putative Phytochrome family protein compare
PP_2222 -0.4 -2.3 conserved protein of unknown function compare
PP_1912 -0.4 -2.2 Phosphate acyltransferase compare
PP_5230 -0.4 -2.0 Tyrosine recombinase XerC compare
PP_0872 -0.4 -2.8 Peptide chain release factor 3 compare
PP_1871 -0.4 -2.7 Protease HtpX compare
PP_1583 -0.4 -2.1 putative Structural protein P5 compare
PP_2503 -0.4 -2.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0319 -0.4 -1.6 conserved protein of unknown function compare
PP_4803 -0.4 -2.8 D-alanyl-D-alanine carboxypeptidase compare
PP_4532 -0.4 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0513 -0.4 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1325 -0.4 -3.2 putative lipoprotein compare
PP_0781 -0.4 -1.8 conserved protein of unknown function compare
PP_4684 -0.4 -2.5 conserved protein of unknown function with kinase-like domain compare
PP_4785 -0.4 -2.1 conserved exported protein of unknown function compare
PP_0653 -0.4 -1.3 conserved protein of unknown function compare
PP_0855 -0.4 -1.3 conserved protein of unknown function compare
PP_1211 -0.4 -1.8 conserved protein of unknown function compare
PP_0002 -0.4 -2.9 probable chromosome partition protein compare
PP_3144 -0.4 -2.8 L-serine dehydratase compare
PP_1623 -0.4 -2.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1268 -0.4 -0.9 putative HtrA suppressor protein sohA compare
PP_2322 -0.4 -1.9 Major outer membrane lipoprotein compare
PP_1020 -0.4 -1.2 putative glucose-6-phosphate 1-epimerase compare
PP_3014 -0.4 -1.4 conserved exported protein of unknown function compare
PP_2223 -0.4 -3.0 conserved protein of unknown function compare
PP_1348 -0.4 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1562 -0.4 -1.5 putative Phage terminase, small subunit compare
PP_2720 -0.4 -0.9 conserved protein of unknown function compare
PP_0959 -0.4 -1.0 phospholipid ABC transporter compare
PP_0958 -0.4 -2.5 phospholipid ABC transporter ATP-binding subunit compare
PP_5337 -0.4 -2.2 LysR family transcriptional regulator compare
PP_0082 -0.4 -2.3 tryptophan synthase alpha chain compare
PP_4058 -0.4 -2.8 1,4-alpha-glucan branching enzyme compare
PP_1679 -0.4 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3036 -0.4 -2.2 conserved protein of unknown function compare
PP_5588 -0.4 -1.8 conserved protein of unknown function compare
PP_1216 -0.4 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4961 -0.4 -1.2 putative Lipoprotein compare
PP_2122 -0.4 -1.5 molybdenum cofactor biosynthesis protein B compare
PP_5279 -0.4 -1.8 conserved protein of unknown function compare
PP_3480 -0.4 -1.8 conserved protein of unknown function compare
PP_1255 -0.4 -1.6 putative cis-4-hydroxy-D-proline oxidase compare
PP_4917 -0.4 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2442 -0.4 -1.3 conserved protein of unknown function, DUF480 family compare
PP_4504 -0.4 -1.3 conserved exported protein of unknown function compare
PP_2883 -0.3 -1.1 conserved protein of unknown function compare
PP_2750 -0.3 -1.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5658 -0.3 -1.4 protein of unknown function compare
PP_0502 -0.3 -2.2 conserved protein of unknown function compare
PP_4699 -0.3 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0794 -0.3 -1.9 1-phosphofructokinase monomer compare
PP_2203 -0.3 -0.8 conserved protein of unknown function compare
PP_4999 -0.3 -0.4 dihydroorotase-like protein compare
PP_5329 -0.3 -0.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0257 -0.3 -1.6 protein sulfur transferase compare
PP_2857 -0.3 -1.3 conserved exported protein of unknown function compare
PP_3061 -0.3 -2.1 conserved protein of unknown function compare
PP_4591 -0.3 -1.8 Ribonuclease D compare
PP_4642 -0.3 -0.7 Cyclic diguanosine monophosphate-binding protein compare
PP_2903 -0.3 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1198 -0.3 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4478 -0.3 -2.6 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_5423 -0.3 -1.4 conserved membrane protein of unknown function compare
PP_4571 -0.3 -2.4 cysteine synthase A compare
PP_3579 -0.3 -2.2 conserved membrane protein of unknown function compare
PP_t57 -0.3 -1.4 tRNA-Arg compare
PP_3947 -0.3 -2.0 nicotinate dehydrogenase subunit A compare
PP_5007 -0.3 -0.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2433 -0.3 -1.4 conserved protein of unknown function compare
PP_3899 -0.3 -1.2 conserved protein of unknown function, hicB family compare
PP_2454 -0.3 -1.5 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_3314 -0.3 -1.7 Heat shock protein, HSP20 family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms