Experiment set50S223 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_4902 -2.9 -4.3 Oligoribonuclease compare
PP_0833 -2.5 -4.0 queuine tRNA-ribosyltransferase compare
PP_4723 -2.1 -7.6 Carbamoyl-phosphate synthase large chain compare
PP_1232 -2.1 -8.9 conserved exported protein of unknown function compare
PP_0856 -1.7 -4.3 conserved lipoprotein of unknown function compare
PP_0393 -1.6 -5.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0339 -1.5 -5.3 Pyruvate dehydrogenase E1 component compare
PP_4724 -1.5 -4.0 Carbamoyl-phosphate synthase small chain compare
PP_5328 -1.5 -2.9 putative phosphate transport system permease protein compare
PP_1994 -1.3 -3.6 tRNA pseudouridine (38-40)synthase compare
PP_4942 -1.3 -3.2 conserved protein of unknown function compare
PP_1898 -1.2 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4999 -1.2 -1.3 dihydroorotase-like protein compare
PP_0653 -1.1 -3.1 conserved protein of unknown function compare
PP_2378 -1.1 -3.4 Fe/S biogenesis protein NfuA compare
PP_5095 -1.0 -2.6 pyrroline-5-carboxylate reductase compare
PP_5017 -1.0 -2.5 Sec-independent protein translocase protein TatB compare
PP_4941 -1.0 -5.3 conserved exported protein of unknown function compare
PP_4204 -1.0 -4.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0719 -1.0 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4804 -0.9 -2.4 RlpA-like lipoprotein compare
PP_1734 -0.8 -3.4 Probable septum site-determining protein MinC compare
PP_4937 -0.8 -5.8 toluene tolerance protein compare
PP_5329 -0.8 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1269 -0.8 -2.0 Universal stress protein family compare
PP_3649 -0.8 -3.4 Transcriptional regulator, GntR family compare
PP_0065 -0.8 -4.0 NAD-binding component of TrK potassium transporter compare
PP_2088 -0.8 -3.0 RNA polymerase sigma factor SigX compare
PP_0888 -0.7 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1912 -0.7 -4.4 Phosphate acyltransferase compare
PP_3098 -0.7 -1.6 conserved protein of unknown function compare
PP_4989 -0.7 -3.3 Protein PilJ compare
PP_4379 -0.7 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5216 -0.7 -1.8 exopolyphosphatase compare
PP_5338 -0.7 -2.7 aspartate ammonia-lyase compare
PP_4895 -0.7 -2.2 tRNA dimethylallyltransferase compare
PP_4880 -0.7 -5.2 exoribonuclease R compare
PP_4504 -0.7 -1.8 conserved exported protein of unknown function compare
PP_1293 -0.6 -1.8 molybdopterin synthase small subunit compare
PP_4120 -0.6 -3.2 NADH-quinone oxidoreductase subunit B compare
PP_4126 -0.6 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_0250 -0.6 -1.8 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1328 -0.6 -2.3 Protein MraZ compare
PP_4471 -0.6 -2.2 Magnesium transporter compare
PP_4482 -0.6 -3.2 Transcriptional regulator, AraC family compare
PP_0001 -0.6 -1.5 probable chromosome-partitioning protein compare
PP_t10 -0.6 -1.1 tRNA-Pro compare
PP_0832 -0.6 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2899 -0.6 -1.7 conserved exported protein of unknown function compare
PP_1099 -0.6 -2.5 Cold shock protein CapB compare
PP_1217 -0.6 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1468 -0.6 -1.2 Tyrosine recombinase XerD compare
PP_5441 -0.6 -2.4 protein of unknown function compare
PP_1128 -0.6 -1.9 OmpA family protein compare
PP_3102 -0.6 -2.7 conserved protein of unknown function compare
PP_2356 -0.6 -4.4 putative Phytochrome family protein compare
PP_1770 -0.6 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_2575 -0.6 -1.7 conserved exported protein of unknown function compare
PP_4785 -0.6 -2.8 conserved exported protein of unknown function compare
PP_0214 -0.5 -3.8 4-aminobutyrate aminotransferase compare
PP_1553 -0.5 -1.3 conserved protein of unknown function compare
PP_4824 -0.5 -3.9 Sensor histidine kinase/response regulator compare
PP_4098 -0.5 -1.9 UvrABC system protein C compare
PP_4546 -0.5 -2.8 ATP-dependent helicase HrpA compare
PP_4994 -0.5 -2.1 conserved protein of unknown function compare
PP_4988 -0.5 -3.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5331 -0.5 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5028 -0.5 -2.9 proline iminopeptidase compare
PP_3365 -0.5 -1.2 Acetolactate synthase compare
PP_4966 -0.5 -2.5 transcriptional regulator of methionine metabolism compare
PP_5114 -0.5 -2.1 putative adenine methyltransferase compare
PP_3336 -0.5 -2.9 conserved protein of unknown function compare
PP_3819 -0.5 -3.4 glutathione reductase (NADPH) compare
PP_2090 -0.5 -2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_5644 -0.5 -1.5 conserved membrane protein of unknown function compare
PP_1415 -0.5 -1.8 putative membrane associated enzyme subunit compare
PP_4944 -0.5 -1.9 Carbamoyltransferase compare
PP_3094 -0.5 -1.9 conserved exported protein of unknown function compare
PP_2055 -0.5 -2.9 putative isomerase compare
PP_5327 -0.5 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_4700 -0.5 -1.1 pantothenate synthetase compare
PP_0127 -0.5 -1.9 Thiol:disulfide interchange protein compare
PP_0962 -0.5 -1.9 toluene-tolerance protein compare
PP_2222 -0.5 -2.2 conserved protein of unknown function compare
PP_4109 -0.4 -1.5 conserved protein of unknown function compare
PP_1387 -0.4 -2.5 Probable HTH-type transcriptional regulator TtgR compare
PP_0401 -0.4 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1508 -0.4 -1.9 conserved protein of unknown function compare
PP_4684 -0.4 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_3840 -0.4 -1.3 conserved protein of unknown function compare
PP_1979 -0.4 -1.8 putative Hydrolase compare
PP_0691 -0.4 -1.5 Glutamate 5-kinase compare
PP_4943 -0.4 -1.5 putative Glycosyl transferase compare
PP_1978 -0.4 -2.7 Transcriptional regulator, TetR family compare
PP_4124 -0.4 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_1237 -0.4 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2087 -0.4 -1.4 CmpX protein compare
PP_4475 -0.4 -3.1 succinylglutamate desuccinylase compare
PP_2354 -0.4 -3.4 Sensory box histidine kinase/response regulator compare
PP_2379 -0.4 -2.3 putative cytochrome oxidase biogenesis protein compare
PP_5310 -0.4 -3.0 junction-specific ATP-dependent DNA helicase compare
PP_0725 -0.4 -3.1 conserved hypothetical TPR repeat protein compare
PP_5546 -0.4 -1.5 conserved protein of unknown function compare
PP_1583 -0.4 -2.5 putative Structural protein P5 compare
PP_3392 -0.4 -1.2 conserved protein of unknown function compare
PP_4532 -0.4 -1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3105 -0.4 -1.7 conserved membrane protein of unknown function compare
PP_5217 -0.4 -3.7 Polyphosphate kinase compare
PP_4004 -0.4 -2.1 DNA translocase FtsK compare
PP_4058 -0.4 -3.2 1,4-alpha-glucan branching enzyme compare
PP_2619 -0.4 -1.5 FHA domain protein compare
PP_1922 -0.4 -2.6 conserved protein of unknown function compare
PP_4964 -0.4 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4156 -0.4 -1.3 Transcriptional regulator, LysR family compare
PP_4406 -0.4 -1.8 conserved protein of unknown function compare
PP_1238 -0.4 -2.5 putative Lipoprotein compare
PP_1198 -0.4 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2724 -0.4 -1.8 conserved protein of unknown function compare
PP_5658 -0.4 -1.7 protein of unknown function compare
PP_1362 -0.4 -2.0 pyruvate kinase II compare
PP_1813 -0.4 -1.6 ComEA-related protein compare
PP_1214 -0.4 -1.8 putative transcriptional regulatory protein compare
PP_5022 -0.4 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_1967 -0.4 -2.9 tRNA D-aminoacylase compare
PP_4913 -0.4 -1.7 conserved protein of unknown function compare
PP_5230 -0.4 -2.1 Tyrosine recombinase XerC compare
PP_0508 -0.4 -1.9 conserved exported protein of unknown function compare
PP_4782 -0.4 -1.8 Phosphomethylpyrimidine kinase compare
PP_0673 -0.4 -1.3 conserved protein of unknown function compare
PP_1764 -0.4 -1.3 Phosphoglycolate phosphatase 2 compare
PP_1589 -0.4 -2.9 uridylyltransferase compare
PP_2319 -0.4 -1.8 conserved protein of unknown function compare
PP_1987 -0.4 -0.9 Methlytransferase, UbiE/COQ5 family compare
PP_0003 -0.4 -1.6 16S RNA methyltransferase compare
PP_1646 -0.4 -1.7 putative Thioredoxin compare
PP_0872 -0.4 -2.4 Peptide chain release factor 3 compare
PP_5311 -0.4 -2.8 putative signal transduction protein compare
PP_0834 -0.3 -0.6 Sec translocation complex subunit YajC compare
PP_2322 -0.3 -1.8 Major outer membrane lipoprotein compare
PP_5104 -0.3 -2.9 thiazole synthase compare
PP_1702 -0.3 -2.0 Recombination-associated protein RdgC compare
PP_1390 -0.3 -1.9 conserved exported protein of unknown function compare
PP_2738 -0.3 -1.7 putative Transcriptional regulator compare
PP_4917 -0.3 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5619 -0.3 -2.1 protein of unknown function compare
PP_2972 -0.3 -1.3 conserved protein of unknown function compare
PP_4008 -0.3 -1.7 ATP-dependent serine protease compare
PP_0963 -0.3 -1.9 putative BolA family protein compare
PP_4787 -0.3 -1.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4131 -0.3 -2.1 NADH-quinone oxidoreductase subunit N compare
PP_4571 -0.3 -2.6 cysteine synthase A compare
PP_0307 -0.3 -1.9 conserved exported protein of unknown function compare
PP_3902 -0.3 -0.9 conserved protein of unknown function compare
PP_4891 -0.3 -2.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1353 -0.3 -2.1 conserved membrane protein of unknown function compare
PP_1348 -0.3 -2.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3508 -0.3 -1.1 Protein CobW compare
PP_4874 -0.3 -0.7 50S ribosomal protein L9 compare
PP_0850 -0.3 -2.4 Dual-specificity RNA methyltransferase RlmN compare
PP_t12 -0.3 -0.7 tRNA-Thr compare
PP_4726 -0.3 -1.0 Chaperone protein DnaJ compare
PP_2203 -0.3 -1.0 conserved protein of unknown function compare
PP_1233 -0.3 -1.9 sulfurtransferase compare
PP_0512 -0.3 -1.4 hypothetical protein compare
PP_3375 -0.3 -2.4 endonuclease I compare
PP_4285 -0.3 -1.4 5-hydroxyisourate hydrolase compare
PP_4551 -0.3 -2.1 Hydrolase, alpha/beta fold family compare
PP_4875 -0.3 -1.9 conserved membrane protein of unknown function compare
PP_1876 -0.3 -1.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5605 -0.3 -2.2 conserved exported protein of unknown function compare
PP_5279 -0.3 -1.1 conserved protein of unknown function compare
PP_5575 -0.3 -0.6 conserved protein of unknown function compare
PP_1834 -0.3 -1.8 conserved protein of unknown function compare
PP_1186 -0.3 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_2079 -0.3 -2.0 conserved protein of unknown function compare
PP_2737 -0.3 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3116 -0.3 -1.6 transcriptional repressor compare
PP_5525 -0.3 -1.7 conserved exported protein of unknown function compare
PP_5430 -0.3 -1.2 protein of unknown function compare
PP_1554 -0.3 -0.9 conserved protein of unknown function compare
PP_0513 -0.3 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3029 -0.3 -2.2 DNA cytosine methyltransferase family protein compare
PP_5035 -0.3 -2.3 Histidine utilization repressor compare
PP_4980 -0.3 -2.2 ATP-dependent RNA helicase compare
PP_0082 -0.3 -1.6 tryptophan synthase alpha chain compare
PP_2620 -0.3 -2.3 conserved protein of unknown function compare
PP_0232 -0.3 -0.8 ATP-binding taurine transporter subunit compare
PP_2655 -0.3 -1.1 conserved protein of unknown function compare
PP_1909 -0.3 -1.8 putative septum formation protein compare
PP_1683 -0.3 -1.0 Transcriptional regulator, MarR family compare
PP_2223 -0.3 -2.4 conserved protein of unknown function compare
PP_4237 -0.3 -2.1 periplasmic protein disulfide isomerase compare
PP_5146 -0.3 -2.4 RNA pyrophosphohydrolase compare
PP_3738 -0.3 -1.6 putative Transcriptional regulator VanR compare
PP_1598 -0.3 -1.7 regulatory intramembrane protein RIP zinc protease compare
PP_2715 -0.3 -1.8 ArsH protein compare
PP_4300 -0.3 -2.3 putative hydroxypyruvate reductase compare
PP_5352 -0.3 -2.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3532 -0.3 -1.0 Transcriptional regulator, AsnC family compare
PP_4260 -0.3 -1.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms