Experiment set50S222 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_0856 -2.0 -4.9 conserved lipoprotein of unknown function compare
PP_4902 -2.0 -3.8 Oligoribonuclease compare
PP_4723 -1.7 -6.7 Carbamoyl-phosphate synthase large chain compare
PP_0833 -1.7 -2.7 queuine tRNA-ribosyltransferase compare
PP_4700 -1.6 -2.8 pantothenate synthetase compare
PP_1232 -1.6 -6.6 conserved exported protein of unknown function compare
PP_5329 -1.4 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4942 -1.3 -4.1 conserved protein of unknown function compare
PP_0393 -1.3 -3.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4999 -1.2 -1.3 dihydroorotase-like protein compare
PP_4724 -1.2 -3.5 Carbamoyl-phosphate synthase small chain compare
PP_2378 -1.2 -3.7 Fe/S biogenesis protein NfuA compare
PP_4268 -1.2 -2.7 nucleoid-associated broad specificity regulator compare
PP_0339 -1.1 -4.4 Pyruvate dehydrogenase E1 component compare
PP_4204 -1.0 -4.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4471 -1.0 -3.7 Magnesium transporter compare
PP_5328 -0.9 -2.3 putative phosphate transport system permease protein compare
PP_3903 -0.9 -2.3 conserved protein of unknown function compare
PP_4874 -0.9 -1.7 50S ribosomal protein L9 compare
PP_4941 -0.9 -5.4 conserved exported protein of unknown function compare
PP_1269 -0.9 -2.3 Universal stress protein family compare
PP_5338 -0.9 -3.9 aspartate ammonia-lyase compare
PP_4008 -0.9 -4.3 ATP-dependent serine protease compare
PP_4994 -0.8 -3.7 conserved protein of unknown function compare
PP_5000 -0.8 -2.7 peptidase component of the ATP-dependent HslVU protease compare
PP_0719 -0.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4993 -0.8 -3.7 Glutathione synthetase compare
PP_4944 -0.8 -3.8 Carbamoyltransferase compare
PP_2379 -0.8 -3.6 putative cytochrome oxidase biogenesis protein compare
PP_5216 -0.8 -1.7 exopolyphosphatase compare
PP_3098 -0.7 -1.7 conserved protein of unknown function compare
PP_3819 -0.7 -5.1 glutathione reductase (NADPH) compare
PP_4880 -0.7 -5.3 exoribonuclease R compare
PP_4199 -0.7 -1.7 putative Lipoprotein compare
PP_2681 -0.7 -1.8 coenzyme PQQ synthesis protein D compare
PP_0855 -0.7 -1.8 conserved protein of unknown function compare
PP_5279 -0.6 -2.5 conserved protein of unknown function compare
PP_2336 -0.6 -3.2 aconitate hydratase 1 compare
PP_1215 -0.6 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_4824 -0.6 -4.4 Sensor histidine kinase/response regulator compare
PP_4004 -0.6 -2.9 DNA translocase FtsK compare
PP_1683 -0.6 -2.5 Transcriptional regulator, MarR family compare
PP_1764 -0.6 -2.4 Phosphoglycolate phosphatase 2 compare
PP_3551 -0.6 -2.0 DNA-binding response regulator, LuxR family compare
PP_4379 -0.6 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4964 -0.6 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0065 -0.6 -2.6 NAD-binding component of TrK potassium transporter compare
PP_5017 -0.6 -1.7 Sec-independent protein translocase protein TatB compare
PP_1734 -0.6 -2.3 Probable septum site-determining protein MinC compare
PP_5456 -0.6 -1.9 conserved protein of unknown function compare
PP_5110 -0.6 -2.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5028 -0.6 -3.5 proline iminopeptidase compare
PP_2356 -0.6 -4.6 putative Phytochrome family protein compare
PP_5310 -0.6 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_1994 -0.6 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1733 -0.5 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0691 -0.5 -1.8 Glutamate 5-kinase compare
PP_0948 -0.5 -1.7 Phosphocarrier protein HPr compare
PP_1702 -0.5 -2.8 Recombination-associated protein RdgC compare
PP_1216 -0.5 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1322 -0.5 -0.6 putative Lipoprotein compare
PP_1062 -0.5 -2.1 MutT/nudix family protein compare
PP_4098 -0.5 -1.9 UvrABC system protein C compare
PP_3649 -0.5 -2.2 Transcriptional regulator, GntR family compare
PP_4937 -0.5 -4.1 toluene tolerance protein compare
PP_0794 -0.5 -2.1 1-phosphofructokinase monomer compare
PP_1362 -0.5 -2.8 pyruvate kinase II compare
PP_1268 -0.5 -1.3 putative HtrA suppressor protein sohA compare
PP_2414 -0.5 -1.7 conserved exported protein of unknown function compare
PP_2972 -0.5 -1.8 conserved protein of unknown function compare
PP_1553 -0.5 -1.3 conserved protein of unknown function compare
PP_4988 -0.5 -3.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5217 -0.5 -4.2 Polyphosphate kinase compare
PP_1860 -0.5 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
PP_5528 -0.4 -1.4 conserved protein of unknown function compare
PP_2773 -0.4 -1.5 conserved protein of unknown function compare
PP_2302 -0.4 -2.6 DNA-binding, ATP-dependent protease compare
PP_4917 -0.4 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1217 -0.4 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2319 -0.4 -2.1 conserved protein of unknown function compare
PP_1468 -0.4 -1.3 Tyrosine recombinase XerD compare
PP_2433 -0.4 -1.5 conserved protein of unknown function compare
PP_4782 -0.4 -2.6 Phosphomethylpyrimidine kinase compare
PP_5327 -0.4 -1.9 putative phosphate ABC transporter, permease subunit compare
PP_0401 -0.4 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_1198 -0.4 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1912 -0.4 -2.1 Phosphate acyltransferase compare
PP_4699 -0.4 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1214 -0.4 -1.6 putative transcriptional regulatory protein compare
PP_3164 -0.4 -1.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2000 -0.4 -0.8 amidophosphoribosyl transferase compare
PP_5748 -0.4 -1.1 cytochrome c heme lyase subunit compare
PP_0832 -0.4 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5352 -0.4 -3.7 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4058 -0.4 -3.2 1,4-alpha-glucan branching enzyme compare
PP_4693 -0.4 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_5063 -0.4 -2.5 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2354 -0.4 -3.4 Sensory box histidine kinase/response regulator compare
PP_5058 -0.4 -2.7 Carboxy-terminal-processing protease compare
PP_2219 -0.4 -2.1 conserved protein of unknown function compare
PP_4785 -0.4 -2.0 conserved exported protein of unknown function compare
PP_3672 -0.4 -1.2 conserved protein of unknown function compare
PP_1583 -0.4 -1.8 putative Structural protein P5 compare
PP_1632 -0.4 -1.4 conserved protein of unknown function compare
PP_5236 -0.4 -3.2 conserved protein of unknown function compare
PP_3508 -0.4 -2.0 Protein CobW compare
PP_0293 -0.4 -0.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0002 -0.4 -3.0 probable chromosome partition protein compare
PP_5274 -0.4 -1.7 conserved protein of unknown function compare
PP_4726 -0.4 -1.4 Chaperone protein DnaJ compare
PP_4101 -0.4 -2.7 Acetyltransferase, GNAT family compare
PP_0035 -0.4 -2.0 putative bactoprenol-linked glycose transferase compare
PP_4684 -0.4 -2.6 conserved protein of unknown function with kinase-like domain compare
PP_4482 -0.4 -2.2 Transcriptional regulator, AraC family compare
PP_0123 -0.4 -2.9 DNA polymerase I, 5 compare
PP_2222 -0.4 -2.2 conserved protein of unknown function compare
PP_2203 -0.4 -1.5 conserved protein of unknown function compare
PP_0214 -0.4 -2.5 4-aminobutyrate aminotransferase compare
PP_5533 -0.4 -1.0 conserved protein of unknown function compare
PP_2144 -0.4 -1.7 Transcriptional regulator, TetR family compare
PP_0963 -0.4 -1.8 putative BolA family protein compare
PP_0001 -0.4 -1.3 probable chromosome-partitioning protein compare
PP_0082 -0.3 -2.0 tryptophan synthase alpha chain compare
PP_3840 -0.3 -1.1 conserved protein of unknown function compare
PP_5201 -0.3 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_0872 -0.3 -2.3 Peptide chain release factor 3 compare
PP_2999 -0.3 -0.9 Glyoxalase family protein compare
PP_5230 -0.3 -1.7 Tyrosine recombinase XerC compare
PP_5054 -0.3 -1.1 glutaredoxin 3 compare
PP_5225 -0.3 -1.1 frataxin compare
PP_2784 -0.3 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2568 -0.3 -0.8 Ring-cleaving dioxygenase compare
PP_5104 -0.3 -2.9 thiazole synthase compare
PP_4738 -0.3 -1.9 conserved exported protein of unknown function compare
PP_3555 -0.3 -2.3 putative Transmembrane sensor compare
PP_3411 -0.3 -1.0 conserved protein of unknown function compare
PP_5350 -0.3 -1.7 Transcriptional regulator, RpiR family compare
PP_2978 -0.3 -1.5 conserved protein of unknown function compare
PP_5686 -0.3 -2.3 protein of unknown function compare
PP_0406 -0.3 -1.4 Nucleotidyltransferase family protein compare
PP_1096 -0.3 -1.2 putative electron transport complex protein compare
PP_0512 -0.3 -1.3 hypothetical protein compare
PP_4226 -0.3 -1.7 conserved protein of unknown function compare
PP_0941 -0.3 -1.7 putative ribosome associated protein compare
PP_3346 -0.3 -1.7 Nickel transporter ATP-binding protein compare
PP_5483 -0.3 -0.8 conserved protein of unknown function compare
PP_0063 -0.3 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1664 -0.3 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4475 -0.3 -2.6 succinylglutamate desuccinylase compare
PP_1325 -0.3 -2.4 putative lipoprotein compare
PP_4045 -0.3 -0.8 conserved protein of unknown function compare
PP_3837 -0.3 -1.1 inner membrane protein of unknown function compare
PP_1690 -0.3 -1.8 conserved protein of unknown function compare
PP_3947 -0.3 -2.0 nicotinate dehydrogenase subunit A compare
PP_5600 -0.3 -1.5 conserved protein of unknown function compare
PP_3726 -0.3 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_2848 -0.3 -1.1 urease accessory protein compare
PP_2835 -0.3 -1.1 putative oxidoreductase compare
PP_1898 -0.3 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5337 -0.3 -2.0 LysR family transcriptional regulator compare
PP_5487 -0.3 -1.2 conserved protein of unknown function compare
PP_3241 -0.3 -0.8 conserved exported protein of unknown function compare
PP_1778 -0.3 -1.9 Lipopolysaccharide ABC export system, permease protein compare
PP_2332 -0.3 -1.8 conserved exported protein of unknown function compare
PP_3824 -0.3 -1.6 conserved exported protein of unknown function compare
PP_5313 -0.3 -1.0 DNA-binding protein HU-alpha compare
PP_0789 -0.3 -1.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4803 -0.3 -2.2 D-alanyl-D-alanine carboxypeptidase compare
PP_2223 -0.3 -2.3 conserved protein of unknown function compare
PP_2016 -0.3 -1.3 conserved protein of unknown function compare
PP_2088 -0.3 -1.1 RNA polymerase sigma factor SigX compare
PP_4285 -0.3 -1.1 5-hydroxyisourate hydrolase compare
PP_0850 -0.3 -2.3 Dual-specificity RNA methyltransferase RlmN compare
PP_0307 -0.3 -1.7 conserved exported protein of unknown function compare
PP_3280 -0.3 -1.4 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_3821 -0.3 -2.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1048 -0.3 -1.4 putative protein secretion protein for export compare
PP_1237 -0.3 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4989 -0.3 -1.3 Protein PilJ compare
PP_2387 -0.3 -1.4 conserved protein of unknown function compare
PP_2070 -0.3 -1.2 Transcriptional regulator, AraC family compare
PP_2530 -0.3 -1.0 conserved protein of unknown function compare
PP_2071 -0.3 -2.0 conserved protein of unknown function compare
PP_t29 -0.3 -1.0 tRNA-Ala compare
PP_0377 -0.3 -1.3 coenzyme PQQ synthesis protein D compare
PP_0888 -0.3 -0.7 Photosynthetic apparatus regulatory protein RegA compare
PP_3902 -0.3 -0.8 conserved protein of unknown function compare
PP_4481 -0.3 -2.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2631 -0.3 -0.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1714 -0.3 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_3971 -0.3 -0.7 conserved protein of unknown function compare
PP_3312 -0.3 -0.6 putative Heat shock protein compare
PP_4891 -0.3 -1.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2396 -0.3 -1.7 conserved exported protein of unknown function compare
PP_2900 -0.3 -1.4 conserved protein of unknown function compare
PP_5723 -0.3 -1.7 protein of unknown function compare
PP_1233 -0.3 -1.5 sulfurtransferase compare
PP_1976 -0.3 -2.1 HlyD family secretion protein compare
PP_0540 -0.3 -2.2 conserved inner membrane protein compare
PP_1909 -0.3 -1.5 putative septum formation protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms