Experiment set50S221 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

200 most important genes:

  gene name fitness t score description  
PP_4902 -2.9 -4.2 Oligoribonuclease compare
PP_0856 -2.2 -4.7 conserved lipoprotein of unknown function compare
PP_5328 -1.9 -3.5 putative phosphate transport system permease protein compare
PP_4724 -1.7 -4.1 Carbamoyl-phosphate synthase small chain compare
PP_4723 -1.7 -6.6 Carbamoyl-phosphate synthase large chain compare
PP_4999 -1.5 -1.4 dihydroorotase-like protein compare
PP_4700 -1.5 -2.6 pantothenate synthetase compare
PP_0833 -1.4 -2.9 queuine tRNA-ribosyltransferase compare
PP_0393 -1.3 -4.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4874 -1.3 -2.2 50S ribosomal protein L9 compare
PP_1232 -1.2 -5.7 conserved exported protein of unknown function compare
PP_5329 -1.2 -2.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3903 -1.2 -4.0 conserved protein of unknown function compare
PP_1215 -1.1 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4941 -1.1 -6.2 conserved exported protein of unknown function compare
PP_0339 -1.1 -4.1 Pyruvate dehydrogenase E1 component compare
PP_4471 -1.0 -3.7 Magnesium transporter compare
PP_5216 -1.0 -2.8 exopolyphosphatase compare
PP_1898 -1.0 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4204 -0.9 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5456 -0.9 -1.2 conserved protein of unknown function compare
PP_1734 -0.9 -3.5 Probable septum site-determining protein MinC compare
PP_0065 -0.9 -3.6 NAD-binding component of TrK potassium transporter compare
PP_1269 -0.9 -2.1 Universal stress protein family compare
PP_4379 -0.8 -4.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4880 -0.8 -6.2 exoribonuclease R compare
PP_4964 -0.8 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4993 -0.8 -3.1 Glutathione synthetase compare
PP_4895 -0.8 -2.6 tRNA dimethylallyltransferase compare
PP_5028 -0.8 -4.4 proline iminopeptidase compare
PP_0653 -0.7 -2.2 conserved protein of unknown function compare
PP_2378 -0.7 -2.5 Fe/S biogenesis protein NfuA compare
PP_0001 -0.7 -2.4 probable chromosome-partitioning protein compare
PP_0957 -0.7 -2.6 D-arabinose 5-phosphate isomerase compare
PP_3819 -0.7 -4.6 glutathione reductase (NADPH) compare
PP_1783 -0.7 -1.6 dTDP-glucose pyrophosphorylase compare
PP_1362 -0.7 -2.8 pyruvate kinase II compare
PP_0691 -0.7 -1.9 Glutamate 5-kinase compare
PP_1099 -0.7 -1.6 Cold shock protein CapB compare
PP_5225 -0.7 -2.0 frataxin compare
PP_0846 -0.7 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_5310 -0.7 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_0512 -0.7 -1.6 hypothetical protein compare
PP_1128 -0.7 -2.5 OmpA family protein compare
PP_1468 -0.6 -2.3 Tyrosine recombinase XerD compare
PP_5338 -0.6 -2.7 aspartate ammonia-lyase compare
PP_2999 -0.6 -1.5 Glyoxalase family protein compare
PP_3649 -0.6 -2.8 Transcriptional regulator, GntR family compare
PP_5331 -0.6 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_5658 -0.6 -2.8 protein of unknown function compare
PP_5748 -0.6 -1.2 cytochrome c heme lyase subunit compare
PP_2029 -0.6 -3.0 von Willebrand factor type A domain protein compare
PP_0963 -0.6 -2.4 putative BolA family protein compare
PP_1764 -0.6 -2.3 Phosphoglycolate phosphatase 2 compare
PP_1994 -0.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_0719 -0.6 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1217 -0.6 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3098 -0.6 -1.3 conserved protein of unknown function compare
PP_4482 -0.6 -3.3 Transcriptional regulator, AraC family compare
PP_0794 -0.6 -3.0 1-phosphofructokinase monomer compare
PP_1553 -0.6 -1.6 conserved protein of unknown function compare
PP_3555 -0.6 -3.3 putative Transmembrane sensor compare
PP_0855 -0.6 -1.7 conserved protein of unknown function compare
PP_2090 -0.6 -2.0 Uroporphyrinogen-III C-methyltransferase compare
PP_4942 -0.6 -2.1 conserved protein of unknown function compare
PP_4944 -0.5 -2.4 Carbamoyltransferase compare
PP_4004 -0.5 -2.9 DNA translocase FtsK compare
PP_3726 -0.5 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_4738 -0.5 -2.0 conserved exported protein of unknown function compare
PP_2581 -0.5 -0.7 conserved protein of unknown function compare
PP_4073 -0.5 -1.5 conserved exported protein of unknown function compare
PP_3105 -0.5 -1.6 conserved membrane protein of unknown function compare
PP_0401 -0.5 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4008 -0.5 -2.6 ATP-dependent serine protease compare
PP_2356 -0.5 -4.2 putative Phytochrome family protein compare
PP_2189 -0.5 -2.0 conserved protein of unknown function compare
PP_4824 -0.5 -3.7 Sensor histidine kinase/response regulator compare
PP_4726 -0.5 -2.1 Chaperone protein DnaJ compare
PP_1909 -0.5 -2.9 putative septum formation protein compare
PP_2750 -0.5 -2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1702 -0.5 -2.7 Recombination-associated protein RdgC compare
PP_0063 -0.5 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2475 -0.5 -3.1 Transcriptional regulator, TetR family compare
PP_0888 -0.5 -1.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4994 -0.5 -2.1 conserved protein of unknown function compare
PP_4988 -0.5 -3.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5289 -0.5 -2.6 Acetylglutamate kinase compare
PP_0214 -0.5 -3.3 4-aminobutyrate aminotransferase compare
PP_2354 -0.5 -4.0 Sensory box histidine kinase/response regulator compare
PP_2616 -0.5 -2.5 conserved protein of unknown function compare
PP_1912 -0.5 -2.9 Phosphate acyltransferase compare
PP_2402 -0.5 -1.5 putative Sensor histidine kinase compare
PP_4937 -0.5 -3.3 toluene tolerance protein compare
PP_2088 -0.5 -1.5 RNA polymerase sigma factor SigX compare
PP_3239 -0.5 -2.1 putative cointegrate resolution protein T Tn4652 compare
PP_t10 -0.5 -0.8 tRNA-Pro compare
PP_0919 -0.5 -2.2 conserved protein of unknown function compare
PP_3018 -0.5 -2.7 conserved protein of unknown function compare
PP_3762 -0.5 -2.3 Response regulator compare
PP_0900 -0.4 -2.7 PAP2 family protein compare
PP_5104 -0.4 -3.4 thiazole synthase compare
PP_4804 -0.4 -1.4 RlpA-like lipoprotein compare
PP_0832 -0.4 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1770 -0.4 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1186 -0.4 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_2044 -0.4 -1.5 conserved inner membrane protein of unknown function compare
PP_0002 -0.4 -3.4 probable chromosome partition protein compare
PP_2046 -0.4 -2.4 Transcriptional regulator, LysR family compare
PP_0872 -0.4 -3.0 Peptide chain release factor 3 compare
PP_4528 -0.4 -1.3 conserved protein of unknown function compare
PP_2055 -0.4 -2.1 putative isomerase compare
PP_4961 -0.4 -0.8 putative Lipoprotein compare
PP_4475 -0.4 -3.0 succinylglutamate desuccinylase compare
PP_3241 -0.4 -1.0 conserved exported protein of unknown function compare
PP_5090 -0.4 -1.9 putative cell division protein compare
PP_3505 -0.4 -1.7 conserved protein of unknown function compare
PP_4478 -0.4 -3.1 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_5014 -0.4 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2122 -0.4 -2.2 molybdenum cofactor biosynthesis protein B compare
PP_2152 -0.4 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_2978 -0.4 -2.4 conserved protein of unknown function compare
PP_4045 -0.4 -1.2 conserved protein of unknown function compare
PP_0916 -0.4 -2.1 Amino acid transporter LysE compare
PP_0494 -0.4 -2.9 selenocysteyl-tRNA-specific translation elongation factor compare
PP_1051 -0.4 -2.6 Type II secretion pathway protein XcpV compare
PP_5017 -0.4 -1.2 Sec-independent protein translocase protein TatB compare
PP_1733 -0.4 -1.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_3919 -0.4 -2.3 conserved protein of unknown function compare
PP_5575 -0.4 -1.5 conserved protein of unknown function compare
PP_2379 -0.4 -2.1 putative cytochrome oxidase biogenesis protein compare
PP_5556 -0.4 -2.0 putative bacteriophage lysis protein compare
PP_5008 -0.4 -0.9 Poly granule-associated protein compare
PP_0503 -0.4 -2.9 Major facilitator family transporter compare
PP_4236 -0.4 -2.2 putative Thiol:disulfide interchange protein dsbE compare
PP_4215 -0.4 -2.4 pyoverdine biosynthesis related protein compare
PP_5294 -0.4 -2.5 Ribonuclease PH compare
PP_2121 -0.4 -1.5 putative Lipoprotein compare
PP_5243 -0.4 -1.7 putative hydrolase compare
PP_4268 -0.4 -1.1 nucleoid-associated broad specificity regulator compare
PP_2322 -0.4 -2.1 Major outer membrane lipoprotein compare
PP_2815 -0.4 -2.5 conserved protein of unknown function compare
PP_4891 -0.4 -2.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5580 -0.4 -1.5 protein of unknown function compare
PP_4980 -0.4 -3.0 ATP-dependent RNA helicase compare
PP_2520 -0.4 -1.7 conserved protein of unknown function compare
PP_1739 -0.4 -2.0 conserved membrane protein of unknown function compare
PP_5528 -0.4 -0.9 conserved protein of unknown function compare
PP_5552 -0.4 -1.5 conserved protein of unknown function compare
PP_5217 -0.4 -3.3 Polyphosphate kinase compare
PP_2826 -0.4 -1.6 Transcriptional regulator MexT compare
PP_0345 -0.4 -1.6 putative Heptose kinase WapP compare
PP_5488 -0.4 -1.9 conserved protein of unknown function compare
PP_5201 -0.4 -1.2 conserved protein of unknown function, UPF0149 family compare
PP_4684 -0.4 -2.2 conserved protein of unknown function with kinase-like domain compare
PP_5311 -0.4 -3.0 putative signal transduction protein compare
PP_3532 -0.4 -1.2 Transcriptional regulator, AsnC family compare
PP_0640 -0.3 -1.5 conserved protein of unknown function compare
PP_2820 -0.3 -1.4 HTH-type transcriptional regulator nfxB compare
PP_5230 -0.3 -2.0 Tyrosine recombinase XerC compare
PP_4826 -0.3 -2.6 Precorrin-3B C17-methyltransferase compare
PP_3481 -0.3 -1.5 conserved exported protein of unknown function compare
PP_0035 -0.3 -1.6 putative bactoprenol-linked glycose transferase compare
PP_5352 -0.3 -3.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4785 -0.3 -2.0 conserved exported protein of unknown function compare
PP_4953 -0.3 -2.3 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_2898 -0.3 -0.8 conserved exported protein of unknown function compare
PP_2018 -0.3 -1.9 adhesin-associated BNR repeat protein (from data) compare
PP_2070 -0.3 -0.9 Transcriptional regulator, AraC family compare
PP_0725 -0.3 -2.3 conserved hypothetical TPR repeat protein compare
PP_1829 -0.3 -0.7 Hydrolase, alpha/beta fold family compare
PP_2223 -0.3 -2.4 conserved protein of unknown function compare
PP_0941 -0.3 -1.8 putative ribosome associated protein compare
PP_5114 -0.3 -1.3 putative adenine methyltransferase compare
PP_1325 -0.3 -2.5 putative lipoprotein compare
PP_1422 -0.3 -2.5 conserved protein of unknown function compare
PP_3757 -0.3 -1.7 Chemotaxis protein CheY compare
PP_2337 -0.3 -1.0 aconitate isomerase compare
PP_5441 -0.3 -1.4 protein of unknown function compare
PP_0834 -0.3 -0.8 Sec translocation complex subunit YajC compare
PP_1508 -0.3 -1.8 conserved protein of unknown function compare
PP_4793 -0.3 -1.1 conserved protein of unknown function compare
PP_5686 -0.3 -1.4 protein of unknown function compare
PP_1742 -0.3 -1.4 conserved inner membrane protein of unknown function compare
PP_0123 -0.3 -2.6 DNA polymerase I, 5 compare
PP_5619 -0.3 -1.9 protein of unknown function compare
PP_1906 -0.3 -1.7 ribosomal large subunit pseudouridine synthase C compare
PP_1556 -0.3 -1.8 conserved protein of unknown function compare
PP_1986 -0.3 -1.2 3-isopropylmalate dehydratase small subunit compare
PP_2433 -0.3 -1.2 conserved protein of unknown function compare
PP_3449 -0.3 -1.2 conserved exported protein of unknown function compare
PP_3971 -0.3 -0.8 conserved protein of unknown function compare
PP_0127 -0.3 -1.4 Thiol:disulfide interchange protein compare
PP_2796 -0.3 -2.0 conserved protein of unknown function compare
PP_0003 -0.3 -1.5 16S RNA methyltransferase compare
PP_3065 -0.3 -1.8 Pyocin R2_PP, tail formation compare
PP_2653 -0.3 -1.5 Transcriptional regulator, Cro/CI family compare
PP_4233 -0.3 -1.4 putative Oxidoreductase, small subunit compare
PP_4982 -0.3 -1.8 putative cytochrome b561, iron-regulated compare
PP_1218 -0.3 -1.6 putative acyl-CoA thioesterase compare
PP_3036 -0.3 -1.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms