Experiment set50S221 for Pseudomonas putida KT2440

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.8 17.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_4099 +2.2 18.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +2.1 18.9 Sensor protein GacS compare
PP_1655 +1.7 5.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1428 +0.9 4.5 Sigma factor AlgU negative regulatory protein compare
PP_4171 +0.8 6.9 conserved exported protein of unknown function compare
PP_0164 +0.8 5.4 conserved protein of unknown function compare
PP_4358 +0.7 4.3 flagellar synthesis, switching and energizing component compare
PP_5051 +0.6 3.2 conserved protein of unknown function compare
PP_4382 +0.6 5.2 Peptidoglycan hydrolase FlgJ compare
PP_4470 +0.6 2.8 putative transcriptional regulator (Arc domain-containing) compare
PP_4383 +0.6 3.8 Flagellar P-ring protein compare
PP_1493 +0.6 3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5486 +0.6 2.5 conserved protein of unknown function compare
PP_4373 +0.6 5.2 Transcriptional regulator FleQ compare
PP_4391 +0.6 4.7 flagellar basal-body rod protein FlgB compare
PP_4384 +0.6 5.3 Flagellar L-ring protein compare
PP_4369 +0.6 4.5 Flagellar M-ring protein compare
PP_3519 +0.6 1.3 putative Lipoprotein compare
PP_4370 +0.6 3.4 Flagellar hook-basal body complex protein FliE compare
PP_4355 +0.6 1.8 flagellar export apparatus subunit compare
PP_4356 +0.5 1.5 Flagellar protein FliO compare
PP_5053 +0.5 4.0 Protein-export protein SecB compare
PP_4642 +0.5 1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_0574 +0.5 4.7 DNA-binding response regulator, LuxR family compare
PP_4365 +0.5 3.6 Flagellar protein FliJ compare
PP_4341 +0.5 4.1 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4366 +0.5 4.6 flagellum-specific ATP synthase compare
PP_1319 +0.5 3.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1513 +0.5 2.7 Ribosomal RNA small subunit methyltransferase J compare
PP_4361 +0.5 3.5 Flagellar hook-length control protein FliK compare
PP_2650 +0.5 2.0 putative 4-hydroxybutyrate dehydrogenase compare
PP_3806 +0.5 2.3 Hydrolase, isochorismatase family compare
PP_4710 +0.5 4.4 tRNA pseudouridine 55 synthase compare
PP_0232 +0.5 1.7 ATP-binding taurine transporter subunit compare
PP_4385 +0.5 3.6 flagellar basal-body rod protein FlgG compare
PP_4388 +0.5 4.6 Flagellar hook protein FlgE compare
PP_4381 +0.5 4.6 Flagellar hook-associated protein FlgK compare
PP_4905 +0.5 3.6 Flagellar motor rotation protein compare
PP_3916 +0.5 1.6 conserved protein of unknown function compare
PP_3064 +0.5 2.6 Phage tail protein compare
PP_4380 +0.5 4.5 Flagellar hook-associated protein FlgL compare
PP_4367 +0.5 2.5 Flagellar assembly protein FliH compare
PP_2907 +0.5 1.6 DNA-binding response regulator compare
PP_1454 +0.5 1.4 conserved protein of unknown function compare
PP_0165 +0.5 4.2 GGDEF domain protein compare
PP_4378 +0.5 4.3 flagellin, filament structural protein compare
PP_2568 +0.5 1.2 Ring-cleaving dioxygenase compare
PP_5093 +0.5 1.2 twitching motility protein compare
PP_4390 +0.5 3.7 flagellar basal-body rod protein FlgC compare
PP_4828 +0.5 1.0 Precorrin-8X methylmutase compare
PP_4359 +0.4 3.2 Flagellar protein FliL compare
PP_4394 +0.4 2.9 flagella basal body P-ring formation protein compare
PP_2077 +0.4 1.9 diaminopimelate decarboxylase compare
PP_3434 +0.4 2.2 conserved protein of unknown function compare
PP_3614 +0.4 1.4 conserved membrane protein of unknown function compare
PP_0246 +0.4 1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_3040 +0.4 1.7 Pyocin R2_PP, holin compare
PP_3392 +0.4 1.5 conserved protein of unknown function compare
PP_2429 +0.4 1.1 putative Membrane protein compare
PP_5238 +0.4 3.0 conserved protein of unknown function compare
PP_5706 +0.4 1.3 Sec translocation complex - SecG subunit compare
PP_1236 +0.4 2.3 putative Glycine cleavage system transcriptional repressor compare
PP_4352 +0.4 3.5 flagellin export apparatus, substrate specificity protein compare
PP_2145 +0.4 1.1 beta-N-acetylglucosaminidase compare
PP_1824 +0.4 0.9 Smr domain protein compare
PP_1317 +0.4 2.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1609 +0.4 2.1 conserved protein of unknown function compare
PP_4396 +0.4 2.2 conserved protein of unknown function compare
PP_5569 +0.4 1.5 protein of unknown function of phage origin compare
PP_4368 +0.4 3.1 flagellar motor switch protein compare
PP_4296 +0.4 1.1 conserved exported protein of unknown function compare
PP_5030 +0.4 2.9 Imidazolonepropionase compare
PP_2931 +0.4 2.4 conserved protein of unknown function compare
PP_3312 +0.4 1.0 putative Heat shock protein compare
PP_2103 +0.4 2.5 conserved protein of unknown function compare
PP_1055 +0.4 1.3 Type II secretion pathway protein GspN compare
PP_4904 +0.4 3.3 Flagellar motor rotation protein compare
PP_4344 +0.4 3.2 flagellar export pore protein compare
PP_1528 +0.4 1.0 conserved protein of unknown function compare
PP_4376 +0.4 3.6 flagellar filament capping protein compare
PP_0167 +0.4 3.6 Toxin secretion ATP-binding protein compare
PP_2414 +0.4 1.2 conserved exported protein of unknown function compare
PP_4353 +0.4 3.1 Flagellar biosynthetic protein fliR compare
PP_0340 +0.4 3.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0166 +0.4 3.4 HlyD family secretion protein compare
PP_4389 +0.4 3.0 Flagellar basal-body rod modification protein FlgD compare
PP_3400 +0.4 2.6 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_3234 +0.4 1.5 Heat shock protein, HSP20 family compare
PP_3245 +0.4 1.4 conserved protein of unknown function compare
PP_5324 +0.4 1.2 Response regulator compare
PP_5483 +0.4 1.4 conserved protein of unknown function compare
PP_3118 +0.4 1.7 DNA linked enzyme involved in DNA repair compare
PP_1654 +0.4 1.6 cysteine synthase B compare
PP_4337 +0.4 2.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5609 +0.4 2.0 conserved protein of unknown function compare
PP_4375 +0.4 2.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_4212 +0.4 1.6 pyoverdine biosynthesis related protein compare
PP_2640 +0.4 1.9 Acetyltransferase, GNAT family compare
PP_1568 +0.3 0.9 conserved protein of unknown function compare
PP_2409 +0.3 1.3 cobalt-zinc-cadmium resistance protein compare
PP_0672 +0.3 3.2 Sensory box protein compare
PP_1041 +0.3 1.5 twin arginine protein export complex subunit compare
PP_4122 +0.3 0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4173 +0.3 2.5 Sensor histidine kinase/response regulator compare
PP_1208 +0.3 1.4 conserved protein of unknown function, SlyX family compare
PP_0276 +0.3 0.9 Transcriptional regulator, Cro/CI family compare
PP_4519 +0.3 3.0 Agglutination protein compare
PP_4386 +0.3 2.8 flagellar basal-body rod protein FlgF compare
PP_4426 +0.3 1.9 Amino acid ABC transporter, permease protein compare
PP_2672 +0.3 1.5 Transcriptional activator protein ExaE compare
PP_2074 +0.3 1.8 Transcriptional regulator, LysR family compare
PP_0168 +0.3 3.2 putative surface adhesion protein compare
PP_1892 +0.3 1.2 conserved protein of unknown function compare
PP_3037 +0.3 1.1 C4-type zinc finger protein, DksA/TraR family compare
PP_0352 +0.3 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4172 +0.3 2.0 conserved exported protein of unknown function compare
PP_3333 +0.3 1.7 conserved protein of unknown function compare
PP_5499 +0.3 1.6 conserved protein of unknown function compare
PP_3052 +0.3 0.8 conserved protein of unknown function compare
PP_5471 +0.3 0.9 putative response regulator receiver protein compare
PP_2677 +0.3 1.7 conserved exported protein of unknown function compare
PP_4251 +0.3 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_4354 +0.3 1.9 flagellar export apparatus subunit compare
PP_2370 +0.3 1.2 conserved protein of unknown function compare
PP_2889 +0.3 2.0 putative Transmembrane regulator PrtR compare
PP_5244 +0.3 2.1 Transcriptional regulator, AraC family compare
PP_1729 +0.3 1.1 conserved protein of unknown function compare
PP_1491 +0.3 2.3 CheW domain protein compare
PP_3509 +0.3 0.9 Glyoxalase family protein compare
PP_4654 +0.3 2.5 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_2908 +0.3 1.8 DNA-binding transcriptional repressor compare
PP_2403 +0.3 0.7 Chemotaxis protein CheY compare
PP_2923 +0.3 1.2 conserved protein of unknown function compare
PP_2441 +0.3 1.6 conserved protein of unknown function compare
PP_2191 +0.3 1.7 putative Lipoprotein compare
PP_3862 +0.3 2.0 putative Phage assembly protein compare
PP_2358 +0.3 1.8 putative Type 1 pili subunit CsuA/B protein compare
PP_4271 +0.3 0.7 conserved protein of unknown function compare
PP_2306 +0.3 0.8 conserved exported protein of unknown function compare
PP_3906 +0.3 1.5 conserved protein of unknown function compare
PP_4966 +0.3 1.4 transcriptional regulator of methionine metabolism compare
PP_3512 +0.3 1.8 conserved membrane protein of unknown function compare
PP_4262 +0.3 0.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2229 +0.3 1.2 putative K(+)/H(+) antiporter subunit C compare
PP_4517 +0.3 1.2 conserved protein of unknown function compare
PP_2697 +0.3 1.1 putative oxidoreductase containing a flavin reductase domain compare
PP_2305 +0.3 1.9 conserved protein of unknown function compare
PP_3073 +0.3 1.5 3-hydroxybutyrate dehydrogenase compare
PP_0630 +0.3 0.8 DNA gyrase inhibitor YacG compare
PP_0819 +0.3 1.5 conserved ferredoxin-like protein of unknown function compare
PP_2383 +0.3 1.9 Transcriptional regulator, AraC family compare
PP_2192 +0.3 1.2 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_4560 +0.3 1.7 putative Ribonuclease BN compare
PP_5508 +0.3 0.7 conserved protein of unknown function compare
PP_4138 +0.3 1.5 Chromate reductase compare
PP_2031 +0.3 1.3 conserved protein of unknown function compare
PP_1570 +0.3 1.2 Head-tail adaptor compare
PP_2845 +0.3 1.7 urease subunit alpha compare
PP_4217 +0.3 2.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1843 +0.3 1.9 Mg2+/Co2+ transporter compare
PP_2359 +0.3 1.8 putative Type 1 pili subunit CsuA/B protein compare
PP_0241 +0.3 1.4 Transporter compare
PP_4150 +0.3 1.8 microcin C transporter - ATP binding subunit compare
PP_4258 +0.3 1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_2413 +0.3 2.1 GGDEF family protein compare
PP_2147 +0.3 1.1 conserved exported protein of unknown function compare
PP_2684 +0.3 1.4 conserved membrane protein of unknown function compare
PP_1968 +0.3 1.9 TetR family transcriptional regulator compare
PP_4981 +0.3 1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_2665 +0.3 1.4 Glycerol metabolism activator compare
PP_1113 +0.3 2.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2327 +0.3 2.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2392 +0.3 1.9 putative major facilitator family transporter compare
PP_0904 +0.3 1.8 InaA protein compare
PP_5027 +0.3 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1153 +0.2 1.4 putative lipoprotein compare
PP_3222 +0.2 1.6 ABC transporter, permease protein compare
PP_4897 +0.2 1.3 N-acetylmuramoyl-L-alanine amidase compare
PP_1833 +0.2 1.1 conserved protein of unknown function compare
PP_5735 +0.2 1.0 conserved hypothetical protein compare
PP_4250 +0.2 1.9 cytochrome c oxidase subunit I, cbb3-type compare
PP_2124 +0.2 1.4 putative Glycosyl transferase compare
PP_2102 +0.2 1.9 Deoxyguanosinetriphosphate triphosphohydrolase-like protein compare
PP_1718 +0.2 1.4 putative diguanylate phosphodiesterase containing EAL domain compare
PP_1488 +0.2 2.2 Methyl-accepting chemotaxis transducer compare
PP_2858 +0.2 0.9 conserved exported protein of unknown function compare
PP_5131 +0.2 1.7 sodium-cystine symporter compare
PP_5678 +0.2 1.7 protein of unknown function compare
PP_2982 +0.2 1.7 putative cointegrate resolution protein T Tn4652 compare
PP_3404 +0.2 1.2 conserved protein of unknown function compare
PP_3208 +0.2 1.8 Oxidoreductase, Pdr/VanB family compare
PP_3850 +0.2 1.7 conserved protein of unknown function compare
PP_1068 +0.2 1.0 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3770 +0.2 1.4 conserved protein of unknown function compare
PP_3412 +0.2 1.4 DNA-binding response regulator, LuxR family compare
PP_4208 +0.2 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5313 +0.2 0.9 DNA-binding protein HU-alpha compare
PP_2376 +0.2 2.1 Esterified fatty acid cis/trans isomerase compare
PP_4162 +0.2 1.2 conserved membrane protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms