Experiment set4S9 for Pseudomonas sp. RS175

Compare to:

D-Fructose carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_03860 -5.2 -6.1 putative murein peptide carboxypeptidase compare
PFR28_02823 -5.1 -3.5 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_02821 -4.9 -17.3 3-isopropylmalate dehydrogenase compare
PFR28_00107 -4.8 -13.6 hypothetical protein conserved
PFR28_00560 -4.8 -12.3 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_05016 -4.7 -16.2 Glutamate synthase [NADPH] small chain compare
PFR28_05015 -4.6 -26.0 Glutamate synthase [NADPH] large chain compare
PFR28_04071 -4.5 -2.1 Multifunctional CCA protein compare
PFR28_03697 -4.2 -13.0 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00573 -4.1 -14.3 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_03596 -4.1 -4.0 Transcriptional regulator MraZ compare
PFR28_04518 -4.1 -14.2 2-oxoglutarate carboxylase small subunit compare
PFR28_02824 -4.0 -9.1 3-isopropylmalate dehydratase large subunit compare
PFR28_00106 -4.0 -7.1 Tagatose-6-phosphate kinase compare
PFR28_00105 -3.9 -7.9 hypothetical protein conserved
PFR28_04932 -3.9 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04930 -3.7 -10.5 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04519 -3.7 -11.2 HTH-type transcriptional activator CmpR compare
PFR28_00187 -3.7 -11.0 Histidinol dehydrogenase compare
PFR28_01142 -3.6 -16.4 Transaldolase compare
PFR28_04985 -3.6 -5.4 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04278 -3.5 -10.8 Dihydroxy-acid dehydratase compare
PFR28_05125 -3.5 -11.0 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00186 -3.5 -5.6 ATP phosphoribosyltransferase compare
PFR28_04929 -3.3 -6.7 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04628 -3.3 -2.2 Thiol:disulfide interchange protein DsbA compare
PFR28_05105 -3.2 -7.5 Phosphoserine phosphatase SerB2 compare
PFR28_01366 -3.2 -10.7 Sulfite reductase [ferredoxin] compare
PFR28_04517 -3.2 -15.1 Oxaloacetate decarboxylase alpha chain compare
PFR28_03724 -3.2 -6.5 Glucose-6-phosphate isomerase compare
PFR28_00305 -3.2 -9.4 2-isopropylmalate synthase compare
PFR28_04246 -3.2 -11.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04986 -3.2 -7.0 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_02603 -3.1 -8.2 Siroheme synthase compare
PFR28_00098 -3.0 -9.7 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_01365 -3.0 -7.1 hypothetical protein compare
PFR28_03388 -2.9 -16.0 Quinolinate synthase A compare
PFR28_04245 -2.9 -15.6 Homoserine O-succinyltransferase compare
PFR28_03363 -2.9 -16.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01930 -2.9 -2.8 HTH-type transcriptional regulator McbR compare
PFR28_04030 -2.9 -2.8 hypothetical protein compare
PFR28_04202 -2.9 -4.3 5,10-methylenetetrahydrofolate reductase compare
PFR28_02810 -2.8 -16.1 O-succinylhomoserine sulfhydrylase compare
PFR28_04933 -2.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04565 -2.8 -14.2 Protein RarD compare
PFR28_04842 -2.8 -7.9 D-3-phosphoglycerate dehydrogenase compare
PFR28_04832 -2.8 -12.6 putative phosphatase compare
PFR28_03714 -2.7 -13.4 RNA polymerase-binding transcription factor DksA compare
PFR28_03218 -2.6 -5.2 Phosphoribosylglycinamide formyltransferase compare
PFR28_03282 -2.6 -9.4 Arginine N-succinyltransferase subunit alpha compare
PFR28_02811 -2.5 -5.6 Amidophosphoribosyltransferase compare
PFR28_00926 -2.4 -2.3 hypothetical protein compare
PFR28_03698 -2.3 -7.7 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03413 -2.2 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00277 -2.2 -2.0 Queuine tRNA-ribosyltransferase compare
PFR28_00241 -2.1 -3.9 Disulfide bond formation protein B compare
PFR28_04887 -2.1 -4.0 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_04564 -2.1 -12.1 Aspartate-semialdehyde dehydrogenase compare
PFR28_03217 -2.0 -1.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_00194 -2.0 -11.3 Bifunctional enzyme CysN/CysC compare
PFR28_04958 -1.9 -2.1 hypothetical protein compare
PFR28_03699 -1.9 -3.4 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03420 -1.9 -4.4 hypothetical protein compare
PFR28_02608 -1.9 -1.3 DNA translocase FtsK compare
PFR28_00193 -1.9 -9.0 Sulfate adenylyltransferase subunit 2 compare
PFR28_00695 -1.9 -2.5 Sulfur carrier protein TusA compare
PFR28_00188 -1.8 -8.7 Histidinol-phosphate aminotransferase compare
PFR28_04308 -1.8 -1.7 Amino-acid acetyltransferase compare
PFR28_01312 -1.8 -2.0 HTH-type transcriptional regulator NorG compare
PFR28_02846 -1.7 -6.8 Adaptive-response sensory-kinase SasA compare
PFR28_05212 -1.7 -9.5 Sensor histidine kinase RcsC compare
PFR28_03856 -1.7 -1.6 LPS-assembly lipoprotein LptE compare
PFR28_01156 -1.7 -5.1 hypothetical protein compare
PFR28_04834 -1.6 -11.3 L-threonine dehydratase biosynthetic IlvA compare
PFR28_05139 -1.6 -1.9 hypothetical protein compare
PFR28_00966 -1.6 -10.6 HTH-type transcriptional regulator CysB compare
PFR28_04874 -1.6 -9.5 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_02210 -1.5 -2.3 cAMP-activated global transcriptional regulator CRP compare
PFR28_04436 -1.5 -6.4 hypothetical protein compare
PFR28_04366 -1.5 -8.9 Sensory transduction protein LytR compare
PFR28_04903 -1.5 -6.2 hypothetical protein compare
PFR28_02750 -1.5 -4.7 Multiple antibiotic resistance protein MarR compare
PFR28_01410 -1.5 -8.0 Response regulator GacA compare
PFR28_00427 -1.5 -9.9 RNA polymerase sigma factor RpoS compare
PFR28_03227 -1.4 -8.5 Signal transduction histidine-protein kinase BarA compare
PFR28_03266 -1.4 -3.1 hypothetical protein compare
PFR28_00928 -1.4 -2.5 putative sugar transferase EpsL compare
PFR28_02346 -1.4 -6.2 hypothetical protein compare
PFR28_03130 -1.4 -2.4 Streptothricin hydrolase compare
PFR28_01435 -1.4 -2.4 Response regulator UvrY compare
PFR28_00561 -1.4 -1.5 Phosphogluconate dehydratase compare
PFR28_00913 -1.3 -4.9 Integration host factor subunit beta compare
PFR28_00689 -1.3 -10.7 L-aspartate oxidase compare
PFR28_00403 -1.3 -3.1 Regulator of sigma-E protease RseP compare
PFR28_03240 -1.3 -1.9 IS110 family transposase ISPfl1 compare
PFR28_04936 -1.3 -3.0 Carboxy-terminal processing protease CtpB compare
PFR28_02763 -1.3 -1.7 hypothetical protein compare
PFR28_02345 -1.3 -7.8 hypothetical protein compare
PFR28_01084 -1.2 -2.2 hypothetical protein compare
PFR28_01378 -1.2 -3.1 Magnesium-chelatase 38 kDa subunit compare
PFR28_01015 -1.2 -1.5 '3'-5' exonuclease DinG' transl_table=11 compare
PFR28_02344 -1.2 -5.9 Chaperone protein HscC compare
PFR28_04378 -1.2 -2.5 Tyrosine recombinase XerC compare
PFR28_04902 -1.2 -5.0 Inner membrane protein YgaZ compare
PFR28_05244 -1.1 -8.0 Copper-exporting P-type ATPase compare
PFR28_03721 -1.1 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04103 -1.1 -5.3 Biotin synthase compare
PFR28_01917 -1.1 -2.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_02924 -1.1 -2.6 2-methyl-aconitate isomerase compare
PFR28_01182 -1.1 -1.4 hypothetical protein compare
PFR28_00918 -1.1 -4.8 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_00851 -1.1 -1.0 Flagellum site-determining protein YlxH compare
PFR28_02116 -1.1 -3.4 hypothetical protein compare
PFR28_05232 -1.0 -2.4 hypothetical protein compare
PFR28_01690 -1.0 -2.1 hypothetical protein compare
PFR28_01809 -1.0 -1.3 hypothetical protein compare
PFR28_02925 -1.0 -6.8 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_03865 -1.0 -4.5 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_04566 -1.0 -6.0 4-chloro-allylglycine synthase compare
PFR28_00873 -0.9 -4.1 hypothetical protein compare
PFR28_02426 -0.9 -6.8 HTH-type transcriptional regulator MurR compare
PFR28_03533 -0.9 -1.4 DNA-binding protein HU 1 compare
PFR28_04052 -0.9 -7.7 hypothetical protein compare
PFR28_04051 -0.9 -5.5 Inner membrane ABC transporter permease protein YdcV compare
PFR28_00276 -0.9 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PFR28_04941 -0.9 -2.6 Protein-export protein SecB compare
PFR28_02800 -0.9 -0.9 hypothetical protein compare
PFR28_05023 -0.9 -1.5 hypothetical protein compare
PFR28_00325 -0.9 -2.6 Inner membrane protein YpjD compare
PFR28_00709 -0.9 -1.6 hypothetical protein compare
PFR28_05071 -0.9 -1.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_01095 -0.9 -4.0 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_03417 -0.9 -1.3 hypothetical protein compare
PFR28_03414 -0.8 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_02236 -0.8 -2.6 hypothetical protein compare
PFR28_03919 -0.8 -1.4 hypothetical protein compare
PFR28_01181 -0.8 -4.2 hypothetical protein compare
PFR28_01960 -0.8 -2.5 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_03427 -0.8 -4.0 Sensor histidine kinase RcsC compare
PFR28_04343 -0.8 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00184 -0.8 -2.2 hypothetical protein compare
PFR28_00728 -0.8 -4.2 5-oxoprolinase subunit A 3 compare
PFR28_03412 -0.8 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04100 -0.8 -3.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04344 -0.8 -2.6 Exopolyphosphatase compare
PFR28_03191 -0.8 -0.7 hypothetical protein compare
PFR28_00159 -0.8 -4.0 hypothetical protein compare
PFR28_00730 -0.8 -2.1 5-oxoprolinase subunit C compare
PFR28_04449 -0.8 -2.4 hypothetical protein compare
PFR28_05201 -0.8 -2.2 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_03784 -0.8 -3.9 Energy-dependent translational throttle protein EttA compare
PFR28_04064 -0.7 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PFR28_03233 -0.7 -2.3 NAD(P)H dehydrogenase (quinone) compare
PFR28_00590 -0.7 -2.2 hypothetical protein compare
PFR28_00452 -0.7 -1.2 hypothetical protein compare
PFR28_01110 -0.7 -2.2 Fatty acid oxidation complex subunit alpha compare
PFR28_01184 -0.7 -4.3 hypothetical protein compare
PFR28_00993 -0.7 -1.9 Virulence factors putative positive transcription regulator BvgA compare
PFR28_03739 -0.7 -1.9 hypothetical protein compare
PFR28_02048 -0.7 -2.2 hypothetical protein compare
PFR28_04998 -0.7 -1.7 ATP-dependent protease ATPase subunit HslU compare
PFR28_04492 -0.7 -5.2 Putative glucose-6-phosphate 1-epimerase compare
PFR28_00729 -0.7 -4.1 5-oxoprolinase subunit B compare
PFR28_05134 -0.7 -1.0 hypothetical protein compare
PFR28_04048 -0.7 -4.3 Phosphoglycolate phosphatase compare
PFR28_00856 -0.7 -3.5 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_04567 -0.7 -4.8 hypothetical protein compare
PFR28_01425 -0.7 -2.3 hypothetical protein compare
PFR28_02577 -0.7 -2.4 hypothetical protein compare
PFR28_01251 -0.7 -1.5 ECF RNA polymerase sigma factor EcfG compare
PFR28_01317 -0.7 -5.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_04102 -0.7 -3.7 8-amino-7-oxononanoate synthase compare
PFR28_00945 -0.7 -1.6 hypothetical protein compare
PFR28_03612 -0.6 -1.8 Cell division protein ZapE compare
PFR28_01587 -0.6 -1.3 hypothetical protein compare
PFR28_03853 -0.6 -1.5 hypothetical protein compare
PFR28_00690 -0.6 -2.1 RNA polymerase sigma-H factor compare
PFR28_00139 -0.6 -3.9 HTH-type transcriptional regulator LutR compare
PFR28_04262 -0.6 -2.5 Ribosomal RNA small subunit methyltransferase D compare
PFR28_01578 -0.6 -2.2 HTH-type transcriptional regulator LutR compare
PFR28_00933 -0.6 -1.5 hypothetical protein compare
PFR28_02734 -0.6 -2.8 Ribose operon repressor compare
PFR28_04244 -0.6 -2.4 hypothetical protein compare
PFR28_03463 -0.6 -0.9 hypothetical protein compare
PFR28_03616 -0.6 -2.3 Methylated-DNA--protein-cysteine methyltransferase compare
PFR28_01114 -0.6 -3.2 hypothetical protein compare
PFR28_04396 -0.6 -2.9 HTH-type transcriptional regulator PuuR compare
PFR28_03305 -0.6 -1.5 Zinc transport protein ZntB compare
PFR28_02077 -0.6 -2.4 Galactose 1-dehydrogenase compare
PFR28_03209 -0.6 -2.1 Corrinoid adenosyltransferase compare
PFR28_03843 -0.6 -2.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04208 -0.6 -2.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_01137 -0.6 -0.6 hypothetical protein compare
PFR28_01043 -0.6 -1.6 hypothetical protein compare
PFR28_01408 -0.6 -1.1 hypothetical protein compare
PFR28_04618 -0.6 -1.9 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_00962 -0.6 -3.5 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
PFR28_01081 -0.6 -1.3 hypothetical protein compare
PFR28_03321 -0.6 -1.3 Protein YciI compare
PFR28_01077 -0.6 -2.0 Recombination protein RecR compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Fructose in Pseudomonas sp. RS175

For carbon source D-Fructose across organisms