Experiment set4S87 for Pseudomonas sp. RS175

Compare to:

Sodium propionate carbon source 20 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04932 -5.4 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04071 -4.7 -1.6 Multifunctional CCA protein compare
PFR28_05015 -4.2 -26.6 Glutamate synthase [NADPH] large chain compare
PFR28_02821 -4.1 -20.8 3-isopropylmalate dehydrogenase compare
PFR28_05016 -4.0 -17.7 Glutamate synthase [NADPH] small chain compare
PFR28_04278 -4.0 -10.9 Dihydroxy-acid dehydratase compare
PFR28_00186 -4.0 -8.0 ATP phosphoribosyltransferase compare
PFR28_00193 -4.0 -14.2 Sulfate adenylyltransferase subunit 2 compare
PFR28_02925 -3.9 -12.9 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_02927 -3.9 -15.1 2-methylcitrate synthase compare
PFR28_01366 -3.9 -10.5 Sulfite reductase [ferredoxin] compare
PFR28_00695 -3.8 -2.5 Sulfur carrier protein TusA compare
PFR28_04245 -3.8 -16.6 Homoserine O-succinyltransferase compare
PFR28_03714 -3.7 -16.4 RNA polymerase-binding transcription factor DksA compare
PFR28_02928 -3.7 -11.0 2-methylisocitrate lyase compare
PFR28_02810 -3.6 -16.0 O-succinylhomoserine sulfhydrylase compare
PFR28_04246 -3.5 -12.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03363 -3.4 -18.4 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04628 -3.4 -2.3 Thiol:disulfide interchange protein DsbA compare
PFR28_02824 -3.4 -7.0 3-isopropylmalate dehydratase large subunit compare
PFR28_04986 -3.4 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_02603 -3.4 -8.1 Siroheme synthase compare
PFR28_04929 -3.4 -8.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04930 -3.4 -11.9 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_00427 -3.4 -17.1 RNA polymerase sigma factor RpoS compare
PFR28_03697 -3.4 -14.7 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00194 -3.3 -13.4 Bifunctional enzyme CysN/CysC compare
PFR28_04832 -3.3 -13.2 putative phosphatase compare
PFR28_05105 -3.3 -8.2 Phosphoserine phosphatase SerB2 compare
PFR28_04933 -3.3 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02823 -3.3 -2.7 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_05125 -3.2 -9.7 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04842 -3.2 -8.4 D-3-phosphoglycerate dehydrogenase compare
PFR28_00305 -3.1 -11.4 2-isopropylmalate synthase compare
PFR28_03388 -3.1 -15.8 Quinolinate synthase A compare
PFR28_00926 -3.1 -2.1 hypothetical protein compare
PFR28_00602 -2.9 -1.3 hypothetical protein compare
PFR28_00187 -2.9 -12.7 Histidinol dehydrogenase compare
PFR28_03223 -2.9 -6.7 GTP pyrophosphokinase compare
PFR28_04888 -2.9 -6.0 hypothetical protein conserved
PFR28_03420 -2.8 -3.4 hypothetical protein compare
PFR28_01095 -2.8 -7.2 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_03860 -2.8 -6.1 putative murein peptide carboxypeptidase compare
PFR28_00844 -2.8 -1.8 hypothetical protein compare
PFR28_05000 -2.8 -2.6 Cell division protein FtsN compare
PFR28_04202 -2.8 -5.2 5,10-methylenetetrahydrofolate reductase compare
PFR28_03846 -2.8 -8.2 hypothetical protein compare
PFR28_05212 -2.8 -12.4 Sensor histidine kinase RcsC compare
PFR28_02924 -2.7 -3.7 2-methyl-aconitate isomerase compare
PFR28_00181 -2.7 -10.1 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_00966 -2.7 -14.3 HTH-type transcriptional regulator CysB compare
PFR28_00188 -2.7 -13.0 Histidinol-phosphate aminotransferase compare
PFR28_02811 -2.7 -6.2 Amidophosphoribosyltransferase compare
PFR28_04030 -2.7 -7.1 hypothetical protein compare
PFR28_00098 -2.7 -9.0 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03657 -2.7 -5.1 Beta-barrel assembly-enhancing protease compare
PFR28_04517 -2.7 -12.8 Oxaloacetate decarboxylase alpha chain compare
PFR28_03883 -2.6 -10.0 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_01881 -2.6 -2.6 putative oxidoreductase compare
PFR28_05244 -2.6 -13.7 Copper-exporting P-type ATPase compare
PFR28_00180 -2.6 -7.5 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_03635 -2.6 -3.5 Malate:quinone oxidoreductase compare
PFR28_04936 -2.5 -4.4 Carboxy-terminal processing protease CtpB compare
PFR28_00928 -2.5 -2.4 putative sugar transferase EpsL compare
PFR28_03716 -2.5 -7.2 hypothetical protein compare
PFR28_04633 -2.5 -4.3 Alginate biosynthesis sensor protein KinB compare
PFR28_04262 -2.5 -6.6 Ribosomal RNA small subunit methyltransferase D compare
PFR28_00828 -2.5 -19.6 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_00826 -2.4 -9.3 Flagellar secretion chaperone FliS compare
PFR28_00927 -2.4 -12.5 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03865 -2.4 -8.6 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01113 -2.4 -3.8 DNA topoisomerase 1 compare
PFR28_04519 -2.4 -9.2 HTH-type transcriptional activator CmpR compare
PFR28_01139 -2.4 -13.5 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_04252 -2.4 -9.7 Thiazole synthase compare
PFR28_04233 -2.3 -4.5 hypothetical protein compare
PFR28_00983 -2.3 -7.5 Protease HtpX compare
PFR28_00403 -2.3 -3.8 Regulator of sigma-E protease RseP compare
PFR28_04345 -2.3 -16.6 Polyphosphate kinase compare
PFR28_01365 -2.3 -5.4 hypothetical protein compare
PFR28_04436 -2.3 -8.3 hypothetical protein compare
PFR28_03721 -2.3 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_00241 -2.2 -4.4 Disulfide bond formation protein B compare
PFR28_05079 -2.2 -7.4 hypothetical protein compare
PFR28_00913 -2.2 -7.0 Integration host factor subunit beta compare
PFR28_03218 -2.2 -6.6 Phosphoribosylglycinamide formyltransferase compare
PFR28_00277 -2.2 -2.1 Queuine tRNA-ribosyltransferase compare
PFR28_00930 -2.2 -7.0 GDP-perosamine synthase compare
PFR28_00825 -2.2 -12.9 B-type flagellar hook-associated protein 2 compare
PFR28_00182 -2.2 -8.5 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_04102 -2.2 -8.8 8-amino-7-oxononanoate synthase compare
PFR28_04518 -2.1 -9.6 2-oxoglutarate carboxylase small subunit compare
PFR28_03843 -2.1 -8.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01092 -2.1 -4.2 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_01930 -2.1 -3.1 HTH-type transcriptional regulator McbR compare
PFR28_03856 -2.1 -1.4 LPS-assembly lipoprotein LptE compare
PFR28_04308 -2.1 -1.4 Amino-acid acetyltransferase compare
PFR28_02719 -2.1 -4.1 Integration host factor subunit alpha compare
PFR28_04985 -2.1 -4.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_03217 -2.1 -1.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_00805 -2.1 -7.0 Flagellar basal-body rod protein FlgG compare
PFR28_00932 -2.1 -15.6 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_05071 -2.0 -2.8 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04979 -2.0 -11.9 Glucans biosynthesis glucosyltransferase H compare
PFR28_05006 -2.0 -16.6 Penicillin-binding protein 1A compare
PFR28_04782 -2.0 -10.5 hypothetical protein compare
PFR28_01460 -2.0 -1.1 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01231 -2.0 -3.6 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_04831 -2.0 -3.1 RNA pyrophosphohydrolase compare
PFR28_00089 -2.0 -1.4 Transcription termination/antitermination protein NusA compare
PFR28_03959 -1.9 -8.3 Outer membrane protein W compare
PFR28_02608 -1.9 -1.3 DNA translocase FtsK compare
PFR28_04100 -1.9 -7.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04059 -1.9 -12.6 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_03631 -1.9 -1.5 hypothetical protein compare
PFR28_00809 -1.9 -12.7 hypothetical protein compare
PFR28_03254 -1.9 -9.4 Flagellar basal body rod protein FlgB compare
PFR28_04978 -1.9 -8.7 Glucans biosynthesis protein G compare
PFR28_03844 -1.9 -5.2 Thiamine-phosphate synthase compare
PFR28_03179 -1.9 -1.7 tRNA-Val compare
PFR28_00159 -1.9 -8.1 hypothetical protein compare
PFR28_00810 -1.9 -10.8 hypothetical protein compare
PFR28_00807 -1.9 -5.0 Flagellar P-ring protein compare
PFR28_00808 -1.9 -8.3 hypothetical protein compare
PFR28_03253 -1.9 -10.7 Flagellar basal-body rod protein FlgC compare
PFR28_04103 -1.8 -7.5 Biotin synthase compare
PFR28_01190 -1.8 -1.3 hypothetical protein compare
PFR28_04937 -1.8 -9.3 Murein hydrolase activator EnvC compare
PFR28_05091 -1.8 -12.7 Phosphomethylpyrimidine synthase compare
PFR28_00840 -1.8 -9.2 hypothetical protein compare
PFR28_00179 -1.8 -6.6 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_04040 -1.8 -2.8 Protein YhfA compare
PFR28_03653 -1.8 -3.0 Molybdopterin-synthase adenylyltransferase compare
PFR28_00918 -1.8 -5.8 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_02484 -1.8 -4.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_04208 -1.8 -5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_05067 -1.8 -3.1 hypothetical protein compare
PFR28_03699 -1.8 -3.5 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03784 -1.8 -7.5 Energy-dependent translational throttle protein EttA compare
PFR28_04785 -1.8 -14.4 hypothetical protein compare
PFR28_05139 -1.8 -2.0 hypothetical protein compare
PFR28_04783 -1.8 -8.3 hypothetical protein compare
PFR28_05201 -1.8 -4.0 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_00804 -1.7 -9.3 Flagellar basal-body rod protein FlgF compare
PFR28_00806 -1.7 -9.9 Flagellar L-ring protein compare
PFR28_04788 -1.7 -12.6 Type I secretion system membrane fusion protein PrsE compare
PFR28_00917 -1.7 -9.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_04834 -1.7 -10.4 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04992 -1.7 -1.0 hypothetical protein compare
PFR28_00916 -1.7 -9.8 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_04489 -1.7 -9.4 Phosphate-binding protein PstS compare
PFR28_04787 -1.6 -9.7 Leukotoxin export ATP-binding protein LtxB compare
PFR28_03282 -1.6 -7.0 Arginine N-succinyltransferase subunit alpha compare
PFR28_01084 -1.6 -1.9 hypothetical protein compare
PFR28_03169 -1.6 -7.4 Tail-specific protease compare
PFR28_04423 -1.6 -2.2 DNA-directed RNA polymerase subunit omega compare
PFR28_00787 -1.6 -2.7 hypothetical protein compare
PFR28_00848 -1.6 -7.0 Flagellar biosynthetic protein FlhB compare
PFR28_04643 -1.6 -4.6 hypothetical protein compare
PFR28_03257 -1.6 -8.3 hypothetical protein compare
PFR28_02929 -1.6 -4.4 HTH-type transcriptional repressor GlaR compare
PFR28_00823 -1.6 -6.8 Flagellin compare
PFR28_05124 -1.5 -3.3 Modulator of FtsH protease HflC compare
PFR28_00831 -1.5 -8.2 Flagellar hook-basal body complex protein FliE compare
PFR28_00325 -1.5 -2.7 Inner membrane protein YpjD compare
PFR28_01094 -1.5 -4.9 hypothetical protein compare
PFR28_00980 -1.5 -1.3 ATP-dependent RNA helicase DeaD compare
PFR28_02048 -1.5 -3.2 hypothetical protein compare
PFR28_00836 -1.5 -6.8 Flagellar FliJ protein compare
PFR28_01081 -1.5 -1.4 hypothetical protein compare
PFR28_02846 -1.5 -6.0 Adaptive-response sensory-kinase SasA compare
PFR28_00405 -1.5 -1.9 hypothetical protein compare
PFR28_04257 -1.4 -10.1 Cell division protein FtsX compare
PFR28_04521 -1.4 -4.4 HTH-type transcriptional regulator HexR compare
PFR28_02941 -1.4 -2.2 hypothetical protein compare
PFR28_04485 -1.4 -2.4 Phosphate-specific transport system accessory protein PhoU compare
PFR28_03724 -1.4 -4.7 Glucose-6-phosphate isomerase compare
PFR28_05118 -1.4 -4.7 N-acetylmuramoyl-L-alanine amidase AmiC compare
PFR28_00842 -1.4 -9.2 Flagellar motor switch protein FliM compare
PFR28_05123 -1.4 -3.5 Modulator of FtsH protease HflK compare
PFR28_00847 -1.4 -4.6 Flagellar biosynthetic protein FliR compare
PFR28_00170 -1.4 -5.2 RNase adapter protein RapZ compare
PFR28_04425 -1.4 -7.8 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03251 -1.4 -10.2 Flagellar hook protein FlgE compare
PFR28_03414 -1.3 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_01435 -1.3 -2.3 Response regulator UvrY compare
PFR28_00851 -1.3 -0.9 Flagellum site-determining protein YlxH compare
PFR28_03259 -1.3 -3.0 hypothetical protein compare
PFR28_01142 -1.3 -9.6 Transaldolase compare
PFR28_03255 -1.3 -8.5 Chemotaxis protein methyltransferase Cher2 compare
PFR28_01879 -1.3 -1.3 hypothetical protein compare
PFR28_00296 -1.3 -2.0 Cytoskeleton protein RodZ compare
PFR28_01127 -1.3 -6.5 Soluble pyridine nucleotide transhydrogenase compare
PFR28_00835 -1.3 -10.3 Flagellum-specific ATP synthase compare
PFR28_00862 -1.3 -3.5 hypothetical protein compare
PFR28_03354 -1.3 -5.9 Peptidoglycan-associated lipoprotein compare
PFR28_03252 -1.3 -4.9 Basal-body rod modification protein FlgD compare
PFR28_02210 -1.2 -1.5 cAMP-activated global transcriptional regulator CRP compare
PFR28_03016 -1.2 -5.9 hypothetical protein compare
PFR28_00846 -1.2 -5.9 Flagellar biosynthetic protein FliQ compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source Sodium propionate in Pseudomonas sp. RS175

For carbon source Sodium propionate across organisms