Experiment set4S85 for Pseudomonas sp. RS175
Sodium propionate carbon source 20 mM
Group: carbon sourceMedia: MME_noCarbon + Sodium propionate (20 mM)
Culturing: Pseudomonas_RS175_ML2, 96 deep well, Aerobic, at 30 (C), shaken=1200 rpm
By: Andrew Frank on 1/31/23
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 10 mM Ammonium chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)
Specific Phenotypes
For 7 genes in this experiment
For carbon source Sodium propionate in Pseudomonas sp. RS175
For carbon source Sodium propionate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Anaerobic respiratory reductases | 1 |
| Fermentations: Mixed acid | 1 |
| Pyruvate metabolism I: anaplerotic reactions, PEP | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Puromycin biosynthesis
- Nucleotide sugars metabolism
- alpha-Linolenic acid metabolism
- Pyruvate metabolism
- Trinitrotoluene degradation
- Carbon fixation in photosynthetic organisms
- Reductive carboxylate cycle (CO2 fixation)
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: