Experiment set4S838 for Escherichia coli HS(pFamp)R (ATCC 700891)

GA

Group: phage
Media: LB media + SM buffer
Culturing: RBTnSeq HSF_ML10, 48 well microplate, Aerobic, at 30 (C), shaken=linear, continuous, 567cpm
By: Isabella on 10/15/2025

Specific Phenotypes

For 6 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Periplasmic disulfide interchange	2
2-phosphoglycolate salvage	1
Biogenesis of c-type cytochromes	1
Glycolate, glyoxylate interconversions	1
Molybdenum cofactor biosynthesis	1
Photorespiration (oxidative C2 cycle)	1
Transport of Molybdenum	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glyoxylate and dicarboxylate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
periplasmic disulfide bond reduction	2	2	1
photorespiration III	9	5	1
photorespiration I	9	5	1
photorespiration II	10	6	1
cytochrome c biogenesis (system I type)	11	11	1