Experiment set4S79 for Rhodanobacter sp000427505 FW510-R12

Compare to:

NLDM_defined; midlog

200 most important genes:

  gene name fitness t score description  
LRK53_RS00685 -3.0 -13.3 SIS domain-containing protein compare
LRK53_RS11805 -2.8 -3.3 heavy metal translocating P-type ATPase compare
LRK53_RS11780 -2.6 -3.1 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS08430 -2.5 -2.3 30S ribosomal protein THX compare
LRK53_RS01585 -2.5 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS11155 -2.4 -10.5 glutamine-hydrolyzing GMP synthase compare
LRK53_RS11795 -2.3 -3.0 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS03165 -2.3 -3.4 homoserine dehydrogenase compare
LRK53_RS18080 -2.1 -4.7 glucose-6-phosphate isomerase compare
LRK53_RS03160 -2.1 -3.4 homoserine kinase compare
LRK53_RS03155 -2.0 -5.7 threonine synthase compare
LRK53_RS05125 -1.9 -7.1 potassium transporter Kup compare
LRK53_RS06670 -1.8 -3.4 RIP metalloprotease RseP compare
LRK53_RS05060 -1.7 -1.5 hypothetical protein compare
LRK53_RS09090 -1.7 -11.0 polyribonucleotide nucleotidyltransferase compare
LRK53_RS12005 -1.7 -2.7 RNA polymerase sigma factor RpoE compare
LRK53_RS14770 -1.7 -5.6 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS09760 -1.7 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS07025 -1.6 -1.4 ABC transporter ATP-binding protein compare
LRK53_RS03095 -1.6 -2.9 dihydroxy-acid dehydratase compare
LRK53_RS14520 -1.6 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS00915 -1.6 -1.9 Na+/H+ antiporter subunit C compare
LRK53_RS00690 -1.6 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS03090 -1.6 -9.5 ketol-acid reductoisomerase compare
LRK53_RS18770 -1.5 -2.5 hypothetical protein compare
LRK53_RS02545 -1.5 -3.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS03085 -1.5 -5.6 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS05905 -1.5 -1.0 thymidylate synthase compare
LRK53_RS04075 -1.5 -12.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS06545 -1.5 -4.7 TIGR02099 family protein compare
LRK53_RS15675 -1.5 -2.2 BolA/IbaG family iron-sulfur metabolism protein compare
LRK53_RS09830 -1.5 -2.3 phosphoglycerate mutase compare
LRK53_RS03105 -1.4 -6.9 3-isopropylmalate dehydratase small subunit compare
LRK53_RS09170 -1.4 -1.8 cupin domain-containing protein compare
LRK53_RS13060 -1.4 -1.6 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS03185 -1.4 -2.4 S-ribosylhomocysteine lyase compare
LRK53_RS12250 -1.4 -8.8 Mth938-like domain-containing protein compare
LRK53_RS06500 -1.4 -2.0 disulfide bond formation protein B compare
LRK53_RS05220 -1.4 -2.9 nucleoside deaminase compare
LRK53_RS17865 -1.4 -2.0 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS03695 -1.3 -9.3 glutamate--cysteine ligase compare
LRK53_RS03120 -1.3 -5.9 2-isopropylmalate synthase compare
LRK53_RS18295 -1.3 -2.4 hypothetical protein compare
LRK53_RS14400 -1.3 -1.1 TetR family transcriptional regulator compare
LRK53_RS09265 -1.3 -1.7 GntR family transcriptional regulator compare
LRK53_RS15655 -1.3 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS08310 -1.2 -9.6 chorismate synthase compare
LRK53_RS03330 -1.2 -1.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS03065 -1.2 -1.2 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS09315 -1.2 -2.3 pseudouridine synthase compare
LRK53_RS03100 -1.2 -7.2 3-isopropylmalate dehydrogenase compare
LRK53_RS01505 -1.2 -2.5 hotdog fold thioesterase compare
LRK53_RS13180 -1.2 -1.8 hypothetical protein compare
LRK53_RS06715 -1.2 -1.4 [protein-PII] uridylyltransferase compare
LRK53_RS04190 -1.2 -3.8 dihydrolipoyl dehydrogenase compare
LRK53_RS03115 -1.2 -6.1 branched-chain amino acid transaminase compare
LRK53_RS14785 -1.1 -2.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS16995 -1.1 -1.2 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS04185 -1.1 -4.4 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS03110 -1.1 -4.9 3-isopropylmalate dehydratase large subunit compare
LRK53_RS03625 -1.1 -1.8 ABC transporter ATP-binding protein compare
LRK53_RS00680 -1.1 -2.5 GntR family transcriptional regulator compare
LRK53_RS01830 -1.1 -1.4 hypothetical protein compare
LRK53_RS18830 -1.0 -1.8 TraV family lipoprotein compare
LRK53_RS12970 -1.0 -1.8 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS03125 -1.0 -6.8 hypothetical protein compare
LRK53_RS10085 -1.0 -1.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS17900 -1.0 -1.2 dUTP diphosphatase compare
LRK53_RS16630 -1.0 -1.5 hypothetical protein compare
LRK53_RS15715 -1.0 -8.2 HPr(Ser) kinase/phosphatase compare
LRK53_RS15705 -1.0 -6.1 RNA polymerase factor sigma-54 compare
LRK53_RS13525 -1.0 -3.7 ferredoxin family protein compare
LRK53_RS15725 -0.9 -7.5 PTS fructose transporter subunit IIA compare
LRK53_RS11400 -0.9 -2.4 DNA repair protein RecN compare
LRK53_RS13140 -0.9 -6.5 D-serine/D-alanine/glycine transporter compare
LRK53_RS18850 -0.9 -1.2 type IV conjugative transfer system protein TraL compare
LRK53_RS15875 -0.9 -0.6 hypothetical protein compare
LRK53_RS12830 -0.9 -1.9 YkgJ family cysteine cluster protein compare
LRK53_RS05390 -0.9 -5.6 serine hydroxymethyltransferase compare
LRK53_RS11960 -0.9 -1.5 response regulator compare
LRK53_RS04265 -0.9 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS01565 -0.9 -2.7 hypothetical protein compare
LRK53_RS00760 -0.9 -1.4 DUF302 domain-containing protein compare
LRK53_RS19175 -0.9 -1.5 hypothetical protein compare
LRK53_RS04505 -0.9 -1.8 met regulon transcriptional regulator MetJ compare
LRK53_RS19165 -0.9 -1.6 hypothetical protein compare
LRK53_RS17625 -0.9 -1.2 benenodin family lasso peptide compare
LRK53_RS17765 -0.9 -2.9 lipoyl synthase compare
LRK53_RS05295 -0.8 -7.6 phosphoribosylformylglycinamidine synthase compare
LRK53_RS16495 -0.8 -2.0 adenosylhomocysteinase compare
LRK53_RS12880 -0.8 -1.4 hypothetical protein compare
LRK53_RS08730 -0.8 -2.0 hypothetical protein compare
LRK53_RS14840 -0.8 -2.6 trypsin-like peptidase domain-containing protein compare
LRK53_RS10270 -0.8 -1.1 alpha/beta fold hydrolase compare
LRK53_RS02850 -0.8 -0.8 response regulator compare
LRK53_RS00740 -0.8 -1.8 MarR family transcriptional regulator compare
LRK53_RS11330 -0.8 -1.6 (d)CMP kinase compare
LRK53_RS07625 -0.8 -2.4 hypothetical protein compare
LRK53_RS16590 -0.8 -2.5 ABC transporter permease compare
LRK53_RS11925 -0.8 -1.9 hypoxanthine-guanine phosphoribosyltransferase compare
LRK53_RS09520 -0.8 -1.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS14890 -0.8 -2.5 hypothetical protein compare
LRK53_RS05170 -0.8 -1.3 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS08420 -0.8 -2.7 MerC domain-containing protein compare
LRK53_RS12245 -0.8 -1.6 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS05725 -0.8 -4.8 glutathione synthase compare
LRK53_RS17895 -0.8 -0.7 phosphomannomutase/phosphoglucomutase compare
LRK53_RS17605 -0.8 -2.7 OmpH family outer membrane protein compare
LRK53_RS04590 -0.8 -4.5 TetR/AcrR family transcriptional regulator compare
LRK53_RS03410 -0.8 -1.8 SCP2 sterol-binding domain-containing protein compare
LRK53_RS11915 -0.7 -1.7 cold-shock protein compare
LRK53_RS05685 -0.7 -5.7 type IV pilus twitching motility protein PilT compare
LRK53_RS01630 -0.7 -1.2 protein-disulfide reductase DsbD compare
LRK53_RS16600 -0.7 -1.4 fumarylacetoacetate hydrolase family protein compare
LRK53_RS08240 -0.7 -4.7 dCTP deaminase compare
LRK53_RS16720 -0.7 -6.5 citrate synthase compare
LRK53_RS09755 -0.7 -5.3 prephenate dehydratase compare
LRK53_RS14355 -0.7 -3.5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
LRK53_RS14725 -0.7 -1.1 DUF2249 domain-containing protein compare
LRK53_RS14795 -0.7 -2.5 hypothetical protein compare
LRK53_RS15895 -0.7 -6.4 glycosyltransferase compare
LRK53_RS05340 -0.7 -1.6 peptide deformylase compare
LRK53_RS14365 -0.7 -1.0 hypothetical protein compare
LRK53_RS05580 -0.7 -2.4 phosphatidylcholine/phosphatidylserine synthase compare
LRK53_RS18675 -0.7 -1.3 DNA polymerase Y family protein compare
LRK53_RS17995 -0.7 -3.0 acetyl-CoA C-acetyltransferase compare
LRK53_RS12440 -0.7 -0.9 hypothetical protein compare
LRK53_RS07035 -0.7 -2.2 TolC family protein compare
LRK53_RS06640 -0.7 -1.8 ribonuclease HII compare
LRK53_RS08350 -0.7 -1.4 tryptophan synthase subunit beta compare
LRK53_RS04445 -0.7 -1.0 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS17135 -0.7 -2.7 pyruvate kinase compare
LRK53_RS01595 -0.7 -2.1 DUF3426 domain-containing protein compare
LRK53_RS10160 -0.7 -1.5 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS14735 -0.7 -1.2 copper-containing nitrite reductase compare
LRK53_RS06915 -0.7 -3.4 non-heme iron oxygenase ferredoxin subunit compare
LRK53_RS08670 -0.7 -1.3 heavy metal-responsive transcriptional regulator compare
LRK53_RS16730 -0.6 -1.1 nucleoside hydrolase compare
LRK53_RS15150 -0.6 -1.6 flagellar basal-body rod protein FlgG compare
LRK53_RS17105 -0.6 -3.8 ribulose-phosphate 3-epimerase compare
LRK53_RS09535 -0.6 -4.4 FtsH protease activity modulator HflK compare
LRK53_RS09905 -0.6 -1.0 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS12585 -0.6 -2.0 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS04285 -0.6 -3.5 phosphoglycerate kinase compare
LRK53_RS13510 -0.6 -4.2 polynucleotide adenylyltransferase PcnB compare
LRK53_RS11180 -0.6 -3.1 tetratricopeptide repeat protein compare
LRK53_RS12025 -0.6 -1.1 DUF2058 family protein compare
LRK53_RS10505 -0.6 -3.6 MBL fold metallo-hydrolase compare
LRK53_RS05190 -0.6 -0.7 pilus assembly PilX N-terminal domain-containing protein compare
LRK53_RS17565 -0.6 -2.1 DUF2127 domain-containing protein compare
LRK53_RS04890 -0.6 -1.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS02135 -0.6 -1.7 hypothetical protein compare
LRK53_RS13715 -0.6 -3.6 phosphotransferase compare
LRK53_RS17145 -0.6 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS17405 -0.6 -4.7 ferredoxin--NADP reductase compare
LRK53_RS05560 -0.6 -2.0 threonine/serine exporter family protein compare
LRK53_RS04680 -0.6 -1.9 DUF1304 domain-containing protein compare
LRK53_RS08030 -0.6 -2.5 cation diffusion facilitator family transporter compare
LRK53_RS04475 -0.6 -3.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS01325 -0.6 -1.7 magnesium-translocating P-type ATPase compare
LRK53_RS16160 -0.6 -1.6 hypothetical protein compare
LRK53_RS02370 -0.6 -2.0 hypothetical protein compare
LRK53_RS16540 -0.6 -3.0 tRNA-Gly compare
LRK53_RS08475 -0.6 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
LRK53_RS13625 -0.6 -1.1 carbon storage regulator CsrA compare
LRK53_RS00395 -0.6 -1.5 SDR family oxidoreductase compare
LRK53_RS17760 -0.6 -3.7 carboxy terminal-processing peptidase compare
LRK53_RS13055 -0.6 -1.9 hypothetical protein compare
LRK53_RS13565 -0.6 -0.9 isocitrate dehydrogenase compare
LRK53_RS07420 -0.6 -1.2 DNA repair protein RadA compare
LRK53_RS19080 -0.6 -2.2 hypothetical protein compare
LRK53_RS10235 -0.6 -2.5 DNA-binding protein compare
LRK53_RS04500 -0.6 -3.1 glycine cleavage system protein GcvH compare
LRK53_RS05360 -0.6 -1.7 peptide deformylase compare
LRK53_RS00940 -0.6 -0.4 hypothetical protein compare
LRK53_RS19155 -0.6 -0.5 hypothetical protein compare
LRK53_RS17860 -0.6 -1.4 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS05015 -0.5 -1.7 LacI family DNA-binding transcriptional regulator compare
LRK53_RS05745 -0.5 -1.9 methyl-accepting chemotaxis protein compare
LRK53_RS07105 -0.5 -1.7 RNA polymerase-associated protein RapA compare
LRK53_RS17125 -0.5 -4.2 fructose-bisphosphate aldolase class I compare
LRK53_RS17205 -0.5 -2.9 fumarylacetoacetate hydrolase family protein compare
LRK53_RS18075 -0.5 -2.7 transaldolase compare
LRK53_RS08485 -0.5 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS14895 -0.5 -0.5 STAS domain-containing protein compare
LRK53_RS08980 -0.5 -1.9 NADH-quinone oxidoreductase subunit J compare
LRK53_RS03630 -0.5 -4.1 fatty acid desaturase compare
LRK53_RS13920 -0.5 -2.1 YajQ family cyclic di-GMP-binding protein compare
LRK53_RS19100 -0.5 -1.0 hypothetical protein compare
LRK53_RS15720 -0.5 -3.4 RNase adapter RapZ compare
LRK53_RS02455 -0.5 -1.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS12825 -0.5 -2.4 DUF1415 domain-containing protein compare
LRK53_RS18925 -0.5 -2.2 hypothetical protein compare
LRK53_RS15970 -0.5 -3.6 molybdopterin-dependent oxidoreductase compare
LRK53_RS01845 -0.5 -3.3 rubredoxin compare
LRK53_RS14100 -0.5 -1.0 response regulator transcription factor compare
LRK53_RS06515 -0.5 -0.9 amidase family protein compare
LRK53_RS18845 -0.5 -1.6 hypothetical protein compare
LRK53_RS09235 -0.5 -2.6 DUF6326 family protein compare
LRK53_RS18825 -0.5 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in nldm control experiments