Experiment set4S76 for Rhodanobacter sp000427505 FW510-R12

Compare to:

NLDM_defined low phosphorus; midlog

200 most important genes:

  gene name fitness t score description  
LRK53_RS11805 -3.2 -3.1 heavy metal translocating P-type ATPase compare
LRK53_RS11795 -2.9 -2.0 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS04445 -2.8 -1.9 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS18770 -2.8 -3.7 hypothetical protein compare
LRK53_RS00685 -2.7 -14.0 SIS domain-containing protein compare
LRK53_RS16510 -2.5 -1.8 DUF4124 domain-containing protein compare
LRK53_RS12005 -2.5 -3.3 RNA polymerase sigma factor RpoE compare
LRK53_RS11780 -2.4 -4.9 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS05435 -2.3 -2.1 GNAT family N-acetyltransferase compare
LRK53_RS05125 -2.3 -5.5 potassium transporter Kup compare
LRK53_RS08820 -2.1 -1.9 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS01585 -2.0 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS01570 -1.9 -2.6 DNA polymerase I compare
LRK53_RS03155 -1.9 -5.2 threonine synthase compare
LRK53_RS03165 -1.9 -3.4 homoserine dehydrogenase compare
LRK53_RS06715 -1.9 -2.4 [protein-PII] uridylyltransferase compare
LRK53_RS14770 -1.8 -5.8 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS09520 -1.7 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS05905 -1.7 -1.2 thymidylate synthase compare
LRK53_RS18155 -1.7 -2.5 hypothetical protein compare
LRK53_RS09090 -1.7 -12.1 polyribonucleotide nucleotidyltransferase compare
LRK53_RS12100 -1.7 -1.6 methyltransferase domain-containing protein compare
LRK53_RS00380 -1.7 -1.3 DUF308 domain-containing protein compare
LRK53_RS19140 -1.6 -2.2 hypothetical protein compare
LRK53_RS00690 -1.6 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS03090 -1.5 -8.8 ketol-acid reductoisomerase compare
LRK53_RS18025 -1.5 -1.3 hypothetical protein compare
LRK53_RS11155 -1.4 -8.2 glutamine-hydrolyzing GMP synthase compare
LRK53_RS08455 -1.4 -2.4 ATP phosphoribosyltransferase compare
LRK53_RS14840 -1.4 -3.9 trypsin-like peptidase domain-containing protein compare
LRK53_RS08355 -1.3 -1.7 tryptophan synthase subunit alpha compare
LRK53_RS09730 -1.3 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS03065 -1.3 -1.3 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS08665 -1.3 -1.6 hypothetical protein compare
LRK53_RS18295 -1.3 -1.8 hypothetical protein compare
LRK53_RS03115 -1.3 -7.8 branched-chain amino acid transaminase compare
LRK53_RS03695 -1.3 -9.3 glutamate--cysteine ligase compare
LRK53_RS09265 -1.2 -1.7 GntR family transcriptional regulator compare
LRK53_RS10980 -1.2 -1.5 hypothetical protein compare
LRK53_RS18080 -1.2 -4.4 glucose-6-phosphate isomerase compare
LRK53_RS04075 -1.2 -10.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS04390 -1.2 -1.5 glycosyltransferase family 2 protein compare
LRK53_RS06670 -1.2 -2.6 RIP metalloprotease RseP compare
LRK53_RS08310 -1.2 -9.6 chorismate synthase compare
LRK53_RS03160 -1.2 -2.4 homoserine kinase compare
LRK53_RS05295 -1.1 -10.4 phosphoribosylformylglycinamidine synthase compare
LRK53_RS00740 -1.1 -2.2 MarR family transcriptional regulator compare
LRK53_RS11285 -1.1 -1.7 tRNA-binding protein compare
LRK53_RS18445 -1.1 -2.4 hypothetical protein compare
LRK53_RS12250 -1.1 -7.7 Mth938-like domain-containing protein compare
LRK53_RS05725 -1.1 -7.7 glutathione synthase compare
LRK53_RS03110 -1.1 -5.1 3-isopropylmalate dehydratase large subunit compare
LRK53_RS14520 -1.1 -1.0 GNAT family N-acetyltransferase compare
LRK53_RS00945 -1.1 -2.4 helix-turn-helix domain-containing protein compare
LRK53_RS03100 -1.1 -6.7 3-isopropylmalate dehydrogenase compare
LRK53_RS13005 -1.0 -0.7 ATP-binding cassette domain-containing protein compare
LRK53_RS04190 -1.0 -3.7 dihydrolipoyl dehydrogenase compare
LRK53_RS04185 -1.0 -3.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS04500 -1.0 -5.3 glycine cleavage system protein GcvH compare
LRK53_RS05265 -1.0 -1.6 hypothetical protein compare
LRK53_RS02855 -1.0 -1.3 tetratricopeptide repeat protein compare
LRK53_RS05685 -1.0 -8.2 type IV pilus twitching motility protein PilT compare
LRK53_RS17145 -1.0 -3.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS06545 -1.0 -3.6 TIGR02099 family protein compare
LRK53_RS09760 -1.0 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS03545 -1.0 -0.7 DUF2249 domain-containing protein compare
LRK53_RS04680 -1.0 -2.2 DUF1304 domain-containing protein compare
LRK53_RS08240 -1.0 -6.5 dCTP deaminase compare
LRK53_RS03125 -1.0 -7.1 hypothetical protein compare
LRK53_RS03120 -1.0 -4.9 2-isopropylmalate synthase compare
LRK53_RS18850 -1.0 -1.8 type IV conjugative transfer system protein TraL compare
LRK53_RS08350 -1.0 -2.0 tryptophan synthase subunit beta compare
LRK53_RS15715 -1.0 -8.5 HPr(Ser) kinase/phosphatase compare
LRK53_RS18830 -1.0 -1.7 TraV family lipoprotein compare
LRK53_RS10035 -0.9 -0.8 hypothetical protein compare
LRK53_RS12370 -0.9 -0.9 VOC family protein compare
LRK53_RS08795 -0.9 -1.9 MBL fold metallo-hydrolase compare
LRK53_RS03635 -0.9 -0.8 50S ribosomal protein L33 compare
LRK53_RS14880 -0.9 -2.1 NUDIX hydrolase compare
LRK53_RS14990 -0.9 -2.4 chemotaxis response regulator CheY compare
LRK53_RS18045 -0.9 -2.0 DUF6429 family protein compare
LRK53_RS15175 -0.9 -2.2 flagellar basal body rod protein FlgB compare
LRK53_RS05220 -0.9 -3.3 nucleoside deaminase compare
LRK53_RS01640 -0.9 -2.6 divalent-cation tolerance protein CutA compare
LRK53_RS02625 -0.9 -2.6 plasmid stabilization protein compare
LRK53_RS13260 -0.8 -1.6 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS12800 -0.8 -1.9 DUF4190 domain-containing protein compare
LRK53_RS15725 -0.8 -6.8 PTS fructose transporter subunit IIA compare
LRK53_RS13140 -0.8 -6.3 D-serine/D-alanine/glycine transporter compare
LRK53_RS05390 -0.8 -5.5 serine hydroxymethyltransferase compare
LRK53_RS15880 -0.8 -1.0 IS5 family transposase compare
LRK53_RS17185 -0.8 -2.1 copper-containing nitrite reductase compare
LRK53_RS15705 -0.8 -5.5 RNA polymerase factor sigma-54 compare
LRK53_RS17340 -0.8 -2.0 arginase compare
LRK53_RS04270 -0.8 -3.0 c-type cytochrome compare
LRK53_RS01320 -0.8 -1.7 hypothetical protein compare
LRK53_RS13380 -0.8 -1.5 hypothetical protein compare
LRK53_RS15655 -0.8 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS17125 -0.8 -6.5 fructose-bisphosphate aldolase class I compare
LRK53_RS16550 -0.8 -2.2 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
LRK53_RS00935 -0.8 -1.6 monovalent cation/H(+) antiporter subunit G compare
LRK53_RS00565 -0.8 -1.5 ATP-binding protein compare
LRK53_RS16055 -0.8 -2.9 hypothetical protein compare
LRK53_RS12970 -0.8 -1.5 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS18285 -0.8 -2.0 hypothetical protein compare
LRK53_RS17760 -0.7 -4.8 carboxy terminal-processing peptidase compare
LRK53_RS01475 -0.7 -2.6 hypothetical protein compare
LRK53_RS13655 -0.7 -1.5 SCP2 sterol-binding domain-containing protein compare
LRK53_RS08450 -0.7 -1.6 YerC/YecD family TrpR-related protein compare
LRK53_RS10200 -0.7 -1.4 TraR/DksA C4-type zinc finger protein compare
LRK53_RS07540 -0.7 -3.4 OsmC family protein compare
LRK53_RS01695 -0.7 -2.0 zinc-finger domain-containing protein compare
LRK53_RS17895 -0.7 -0.8 phosphomannomutase/phosphoglucomutase compare
LRK53_RS12700 -0.7 -1.6 DUF3293 domain-containing protein compare
LRK53_RS10295 -0.7 -2.6 YCF48-related protein compare
LRK53_RS05340 -0.7 -1.5 peptide deformylase compare
LRK53_RS14850 -0.7 -3.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
LRK53_RS07980 -0.7 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS03085 -0.7 -2.7 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS17605 -0.7 -2.1 OmpH family outer membrane protein compare
LRK53_RS01100 -0.7 -3.7 pteridine reductase compare
LRK53_RS09535 -0.7 -4.9 FtsH protease activity modulator HflK compare
LRK53_RS04890 -0.7 -1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS03035 -0.7 -3.5 8-amino-7-oxononanoate synthase compare
LRK53_RS01630 -0.7 -1.5 protein-disulfide reductase DsbD compare
LRK53_RS05370 -0.7 -2.1 hypothetical protein compare
LRK53_RS19155 -0.7 -1.2 hypothetical protein compare
LRK53_RS04475 -0.7 -4.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS06035 -0.7 -0.6 helix-turn-helix domain-containing protein compare
LRK53_RS04285 -0.7 -3.5 phosphoglycerate kinase compare
LRK53_RS02850 -0.7 -0.7 response regulator compare
LRK53_RS10250 -0.7 -2.3 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS16675 -0.7 -1.0 DUF58 domain-containing protein compare
LRK53_RS04580 -0.7 -0.9 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS00940 -0.7 -0.8 hypothetical protein compare
LRK53_RS03700 -0.7 -0.4 transcription termination factor Rho compare
LRK53_RS17405 -0.7 -5.5 ferredoxin--NADP reductase compare
LRK53_RS11050 -0.7 -1.8 hypothetical protein compare
LRK53_RS03105 -0.7 -3.3 3-isopropylmalate dehydratase small subunit compare
LRK53_RS04325 -0.7 -1.8 type II toxin-antitoxin system ParD family antitoxin compare
LRK53_RS04070 -0.7 -0.8 NADP-dependent malic enzyme compare
LRK53_RS19110 -0.6 -1.2 hypothetical protein compare
LRK53_RS17865 -0.6 -1.1 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS07490 -0.6 -3.3 phytoene synthase compare
LRK53_RS00460 -0.6 -2.5 acetyltransferase compare
LRK53_RS07310 -0.6 -1.6 DEAD/DEAH box helicase compare
LRK53_RS16860 -0.6 -0.5 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS14795 -0.6 -2.7 hypothetical protein compare
LRK53_RS06850 -0.6 -0.7 protein translocase subunit SecD compare
LRK53_RS16105 -0.6 -1.8 hypothetical protein compare
LRK53_RS18610 -0.6 -1.8 response regulator transcription factor compare
LRK53_RS18995 -0.6 -1.5 hypothetical protein compare
LRK53_RS15105 -0.6 -2.3 flagellar export chaperone FliS compare
LRK53_RS04265 -0.6 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS09710 -0.6 -2.5 high frequency lysogenization protein HflD compare
LRK53_RS11420 -0.6 -2.5 outer membrane protein assembly factor BamE compare
LRK53_RS18075 -0.6 -3.2 transaldolase compare
LRK53_RS07035 -0.6 -2.1 TolC family protein compare
LRK53_RS18070 -0.6 -1.7 HAD family hydrolase compare
LRK53_RS11180 -0.6 -3.3 tetratricopeptide repeat protein compare
LRK53_RS01625 -0.6 -1.9 TlpA family protein disulfide reductase compare
LRK53_RS13510 -0.6 -4.5 polynucleotide adenylyltransferase PcnB compare
LRK53_RS08300 -0.6 -4.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
LRK53_RS03330 -0.6 -0.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS00805 -0.6 -3.7 LacI family DNA-binding transcriptional regulator compare
LRK53_RS11620 -0.6 -1.3 hypothetical protein compare
LRK53_RS05760 -0.6 -0.5 chemotaxis protein CheW compare
LRK53_RS14890 -0.6 -1.8 hypothetical protein compare
LRK53_RS05110 -0.6 -1.8 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS00500 -0.6 -2.8 class I SAM-dependent methyltransferase compare
LRK53_RS03080 -0.6 -0.8 acetolactate synthase small subunit compare
LRK53_RS03185 -0.6 -1.3 S-ribosylhomocysteine lyase compare
LRK53_RS16720 -0.6 -5.2 citrate synthase compare
LRK53_RS15085 -0.6 -2.3 flagellar hook-basal body complex protein FliE compare
LRK53_RS05660 -0.6 -3.4 cobalamin-binding protein compare
LRK53_RS11455 -0.6 -1.7 NfuA family Fe-S biogenesis protein compare
LRK53_RS01620 -0.6 -2.4 type II 3-dehydroquinate dehydratase compare
LRK53_RS02255 -0.6 -1.6 3-oxoacyl-ACP reductase FabG compare
LRK53_RS11990 -0.6 -3.6 translation elongation factor 4 compare
LRK53_RS12265 -0.6 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK53_RS15720 -0.6 -3.9 RNase adapter RapZ compare
LRK53_RS09755 -0.6 -4.4 prephenate dehydratase compare
LRK53_RS04590 -0.6 -3.4 TetR/AcrR family transcriptional regulator compare
LRK53_RS13525 -0.6 -2.2 ferredoxin family protein compare
LRK53_RS07095 -0.6 -3.3 rhomboid family intramembrane serine protease compare
LRK53_RS08910 -0.6 -1.6 endolytic transglycosylase MltG compare
LRK53_RS09595 -0.6 -0.5 hypothetical protein compare
LRK53_RS05470 -0.6 -2.5 hypothetical protein compare
LRK53_RS13920 -0.6 -2.1 YajQ family cyclic di-GMP-binding protein compare
LRK53_RS14355 -0.6 -2.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
LRK53_RS13660 -0.5 -2.1 CoA transferase compare
LRK53_RS00540 -0.5 -1.7 nucleotidyltransferase family protein compare
LRK53_RS09770 -0.5 -3.3 excinuclease ABC subunit UvrC compare
LRK53_RS19135 -0.5 -1.3 hypothetical protein compare
LRK53_RS17765 -0.5 -2.1 lipoyl synthase compare
LRK53_RS12825 -0.5 -2.5 DUF1415 domain-containing protein compare
LRK53_RS05735 -0.5 -2.0 response regulator compare
LRK53_RS01315 -0.5 -4.8 heme o synthase compare
LRK53_RS15895 -0.5 -4.7 glycosyltransferase compare
LRK53_RS13625 -0.5 -1.1 carbon storage regulator CsrA compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in nldm low p experiments