Experiment set4S73 for Rhodanobacter sp000427505 FW510-R12

Compare to:

NLDM_defined low iron; midlog

200 most important genes:

  gene name fitness t score description  
LRK53_RS00690 -3.8 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS00685 -3.3 -14.4 SIS domain-containing protein compare
LRK53_RS11805 -3.0 -3.6 heavy metal translocating P-type ATPase compare
LRK53_RS11795 -3.0 -2.1 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS01585 -2.9 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS09265 -2.9 -2.6 GntR family transcriptional regulator compare
LRK53_RS03165 -2.7 -5.3 homoserine dehydrogenase compare
LRK53_RS05555 -2.4 -2.2 NfeD family protein compare
LRK53_RS04185 -2.3 -7.1 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS11780 -2.3 -5.4 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS08795 -2.1 -3.3 MBL fold metallo-hydrolase compare
LRK53_RS05125 -2.0 -8.7 potassium transporter Kup compare
LRK53_RS18080 -2.0 -5.5 glucose-6-phosphate isomerase compare
LRK53_RS03085 -1.8 -6.7 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS11155 -1.8 -10.0 glutamine-hydrolyzing GMP synthase compare
LRK53_RS03155 -1.8 -6.1 threonine synthase compare
LRK53_RS14770 -1.8 -5.7 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS12005 -1.7 -3.0 RNA polymerase sigma factor RpoE compare
LRK53_RS06850 -1.7 -1.5 protein translocase subunit SecD compare
LRK53_RS19175 -1.7 -2.9 hypothetical protein compare
LRK53_RS03095 -1.7 -3.4 dihydroxy-acid dehydratase compare
LRK53_RS09090 -1.7 -12.1 polyribonucleotide nucleotidyltransferase compare
LRK53_RS19140 -1.6 -2.4 hypothetical protein compare
LRK53_RS14840 -1.6 -4.7 trypsin-like peptidase domain-containing protein compare
LRK53_RS03160 -1.6 -2.9 homoserine kinase compare
LRK53_RS04190 -1.6 -4.9 dihydrolipoyl dehydrogenase compare
LRK53_RS05740 -1.5 -1.2 chemotaxis protein CheW compare
LRK53_RS19110 -1.5 -1.5 hypothetical protein compare
LRK53_RS11425 -1.5 -2.7 RnfH family protein compare
LRK53_RS07025 -1.5 -1.6 ABC transporter ATP-binding protein compare
LRK53_RS03090 -1.5 -9.1 ketol-acid reductoisomerase compare
LRK53_RS12250 -1.5 -10.3 Mth938-like domain-containing protein compare
LRK53_RS06870 -1.4 -1.6 SUF system Fe-S cluster assembly regulator compare
LRK53_RS06670 -1.4 -3.2 RIP metalloprotease RseP compare
LRK53_RS04075 -1.4 -11.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS03065 -1.3 -1.4 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS06035 -1.3 -1.8 helix-turn-helix domain-containing protein compare
LRK53_RS13020 -1.3 -1.4 sulfur transferase domain-containing protein compare
LRK53_RS16200 -1.3 -5.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK53_RS05905 -1.3 -1.4 thymidylate synthase compare
LRK53_RS06545 -1.3 -4.3 TIGR02099 family protein compare
LRK53_RS03110 -1.2 -5.7 3-isopropylmalate dehydratase large subunit compare
LRK53_RS08310 -1.2 -10.1 chorismate synthase compare
LRK53_RS03115 -1.2 -6.8 branched-chain amino acid transaminase compare
LRK53_RS03120 -1.2 -4.8 2-isopropylmalate synthase compare
LRK53_RS15655 -1.2 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS03695 -1.2 -9.0 glutamate--cysteine ligase compare
LRK53_RS13565 -1.2 -1.5 isocitrate dehydrogenase compare
LRK53_RS08350 -1.1 -2.2 tryptophan synthase subunit beta compare
LRK53_RS00945 -1.1 -2.1 helix-turn-helix domain-containing protein compare
LRK53_RS07980 -1.1 -1.4 GNAT family N-acetyltransferase compare
LRK53_RS14400 -1.1 -1.1 TetR family transcriptional regulator compare
LRK53_RS10200 -1.1 -1.5 TraR/DksA C4-type zinc finger protein compare
LRK53_RS02455 -1.1 -2.3 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS09760 -1.1 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS05390 -1.1 -7.1 serine hydroxymethyltransferase compare
LRK53_RS10035 -1.1 -1.0 hypothetical protein compare
LRK53_RS12700 -1.1 -1.9 DUF3293 domain-containing protein compare
LRK53_RS18770 -1.1 -1.8 hypothetical protein compare
LRK53_RS11005 -1.0 -2.6 Tn3 family resolvase compare
LRK53_RS09830 -1.0 -2.1 phosphoglycerate mutase compare
LRK53_RS02150 -1.0 -2.8 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS17995 -1.0 -3.8 acetyl-CoA C-acetyltransferase compare
LRK53_RS15055 -1.0 -3.4 flagellar hook-length control protein FliK compare
LRK53_RS04070 -1.0 -1.0 NADP-dependent malic enzyme compare
LRK53_RS11790 -1.0 -3.1 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS02850 -1.0 -1.1 response regulator compare
LRK53_RS15715 -1.0 -8.5 HPr(Ser) kinase/phosphatase compare
LRK53_RS08205 -1.0 -1.7 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS03185 -1.0 -1.8 S-ribosylhomocysteine lyase compare
LRK53_RS09730 -1.0 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS03100 -0.9 -5.5 3-isopropylmalate dehydrogenase compare
LRK53_RS05685 -0.9 -7.4 type IV pilus twitching motility protein PilT compare
LRK53_RS08455 -0.9 -2.3 ATP phosphoribosyltransferase compare
LRK53_RS14010 -0.9 -1.9 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS19155 -0.9 -1.6 hypothetical protein compare
LRK53_RS09315 -0.9 -2.2 pseudouridine synthase compare
LRK53_RS15725 -0.9 -7.6 PTS fructose transporter subunit IIA compare
LRK53_RS16495 -0.9 -2.3 adenosylhomocysteinase compare
LRK53_RS18390 -0.9 -2.1 hypothetical protein compare
LRK53_RS15705 -0.9 -6.0 RNA polymerase factor sigma-54 compare
LRK53_RS13140 -0.9 -6.7 D-serine/D-alanine/glycine transporter compare
LRK53_RS04445 -0.9 -1.3 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS05470 -0.9 -3.6 hypothetical protein compare
LRK53_RS09420 -0.9 -1.0 YidB family protein compare
LRK53_RS13510 -0.9 -5.7 polynucleotide adenylyltransferase PcnB compare
LRK53_RS07600 -0.9 -1.0 ABC transporter ATP-binding protein compare
LRK53_RS14670 -0.8 -1.6 purine-nucleoside phosphorylase compare
LRK53_RS04590 -0.8 -5.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS03125 -0.8 -5.5 hypothetical protein compare
LRK53_RS07450 -0.8 -0.6 50S ribosomal protein L19 compare
LRK53_RS03105 -0.8 -4.5 3-isopropylmalate dehydratase small subunit compare
LRK53_RS13525 -0.8 -3.4 ferredoxin family protein compare
LRK53_RS04475 -0.8 -5.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS04285 -0.8 -4.0 phosphoglycerate kinase compare
LRK53_RS16720 -0.8 -7.4 citrate synthase compare
LRK53_RS05410 -0.8 -2.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK53_RS16675 -0.8 -1.0 DUF58 domain-containing protein compare
LRK53_RS05220 -0.8 -2.9 nucleoside deaminase compare
LRK53_RS14055 -0.8 -2.8 hypothetical protein compare
LRK53_RS05295 -0.8 -7.1 phosphoribosylformylglycinamidine synthase compare
LRK53_RS17765 -0.8 -3.1 lipoyl synthase compare
LRK53_RS12280 -0.8 -2.0 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS18120 -0.8 -1.5 energy transducer TonB compare
LRK53_RS07490 -0.8 -3.1 phytoene synthase compare
LRK53_RS07580 -0.7 -2.0 IS256 family transposase compare
LRK53_RS01630 -0.7 -2.1 protein-disulfide reductase DsbD compare
LRK53_RS14640 -0.7 -1.1 MoaD/ThiS family protein compare
LRK53_RS11565 -0.7 -1.5 nucleoside diphosphate kinase regulator compare
LRK53_RS18125 -0.7 -0.7 hypothetical protein compare
LRK53_RS15895 -0.7 -6.5 glycosyltransferase compare
LRK53_RS09755 -0.7 -5.4 prephenate dehydratase compare
LRK53_RS19020 -0.7 -2.5 hypothetical protein compare
LRK53_RS15250 -0.7 -4.4 membrane assembly protein AsmA compare
LRK53_RS05725 -0.7 -4.9 glutathione synthase compare
LRK53_RS03625 -0.7 -1.8 ABC transporter ATP-binding protein compare
LRK53_RS05015 -0.7 -2.5 LacI family DNA-binding transcriptional regulator compare
LRK53_RS15955 -0.7 -0.9 PhzF family phenazine biosynthesis protein compare
LRK53_RS17605 -0.7 -2.0 OmpH family outer membrane protein compare
LRK53_RS06845 -0.7 -2.3 preprotein translocase subunit YajC compare
LRK53_RS04580 -0.7 -1.5 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS07955 -0.7 -2.6 5'-nucleotidase compare
LRK53_RS08240 -0.7 -4.5 dCTP deaminase compare
LRK53_RS12275 -0.7 -1.5 Smr/MutS family protein compare
LRK53_RS17125 -0.7 -5.4 fructose-bisphosphate aldolase class I compare
LRK53_RS09520 -0.7 -0.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS00680 -0.7 -1.4 GntR family transcriptional regulator compare
LRK53_RS17895 -0.7 -0.7 phosphomannomutase/phosphoglucomutase compare
LRK53_RS17405 -0.7 -5.4 ferredoxin--NADP reductase compare
LRK53_RS02645 -0.7 -2.4 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS11265 -0.7 -1.5 hypothetical protein compare
LRK53_RS08575 -0.6 -1.5 RNA-binding S4 domain-containing protein compare
LRK53_RS10450 -0.6 -2.3 FUSC family protein compare
LRK53_RS07925 -0.6 -2.8 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS07485 -0.6 -2.8 phosphoglycolate phosphatase compare
LRK53_RS16900 -0.6 -2.1 ribose-5-phosphate isomerase RpiA compare
LRK53_RS11955 -0.6 -4.0 hypothetical protein compare
LRK53_RS02545 -0.6 -1.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS05355 -0.6 -2.5 hypothetical protein compare
LRK53_RS17760 -0.6 -4.2 carboxy terminal-processing peptidase compare
LRK53_RS08730 -0.6 -1.3 hypothetical protein compare
LRK53_RS02295 -0.6 -2.9 ribokinase compare
LRK53_RS10975 -0.6 -2.3 hypothetical protein compare
LRK53_RS00805 -0.6 -4.4 LacI family DNA-binding transcriptional regulator compare
LRK53_RS18595 -0.6 -1.9 GtrA family protein compare
LRK53_RS11285 -0.6 -1.2 tRNA-binding protein compare
LRK53_RS18295 -0.6 -1.1 hypothetical protein compare
LRK53_RS02135 -0.6 -1.5 hypothetical protein compare
LRK53_RS15085 -0.6 -2.1 flagellar hook-basal body complex protein FliE compare
LRK53_RS18075 -0.6 -3.4 transaldolase compare
LRK53_RS14735 -0.6 -1.4 copper-containing nitrite reductase compare
LRK53_RS17410 -0.6 -1.4 DUF456 domain-containing protein compare
LRK53_RS05170 -0.6 -1.2 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS00395 -0.6 -1.7 SDR family oxidoreductase compare
LRK53_RS17145 -0.6 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS18860 -0.6 -1.0 hypothetical protein compare
LRK53_RS08070 -0.6 -2.7 DUF411 domain-containing protein compare
LRK53_RS07045 -0.6 -1.3 response regulator compare
LRK53_RS17990 -0.6 -2.6 energy transducer TonB compare
LRK53_RS03630 -0.6 -4.7 fatty acid desaturase compare
LRK53_RS00905 -0.6 -2.1 response regulator compare
LRK53_RS07200 -0.6 -1.2 hypothetical protein compare
LRK53_RS15105 -0.6 -1.9 flagellar export chaperone FliS compare
LRK53_RS05615 -0.6 -1.6 WGR domain-containing protein compare
LRK53_RS17205 -0.6 -2.8 fumarylacetoacetate hydrolase family protein compare
LRK53_RS01530 -0.6 -0.5 YiiD C-terminal domain-containing protein compare
LRK53_RS15720 -0.6 -3.6 RNase adapter RapZ compare
LRK53_RS08225 -0.5 -1.1 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS12115 -0.5 -3.4 SurA N-terminal domain-containing protein compare
LRK53_RS12740 -0.5 -1.6 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS13770 -0.5 -2.2 protease HtpX compare
LRK53_RS17185 -0.5 -1.5 copper-containing nitrite reductase compare
LRK53_RS12830 -0.5 -1.3 YkgJ family cysteine cluster protein compare
LRK53_RS08355 -0.5 -0.8 tryptophan synthase subunit alpha compare
LRK53_RS11355 -0.5 -3.2 transcription elongation factor GreA compare
LRK53_RS02570 -0.5 -2.5 alpha/beta hydrolase compare
LRK53_RS15175 -0.5 -1.1 flagellar basal body rod protein FlgB compare
LRK53_RS06105 -0.5 -2.7 RNA polymerase sigma factor compare
LRK53_RS11960 -0.5 -1.2 response regulator compare
LRK53_RS11635 -0.5 -1.4 M48 family metallopeptidase compare
LRK53_RS08030 -0.5 -2.3 cation diffusion facilitator family transporter compare
LRK53_RS16860 -0.5 -0.7 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS07095 -0.5 -3.0 rhomboid family intramembrane serine protease compare
LRK53_RS06180 -0.5 -1.9 DUF779 domain-containing protein compare
LRK53_RS11330 -0.5 -1.3 (d)CMP kinase compare
LRK53_RS16740 -0.5 -3.3 RidA family protein compare
LRK53_RS14890 -0.5 -1.8 hypothetical protein compare
LRK53_RS03235 -0.5 -1.2 glycerophosphodiester phosphodiesterase compare
LRK53_RS11455 -0.5 -1.4 NfuA family Fe-S biogenesis protein compare
LRK53_RS14850 -0.5 -3.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
LRK53_RS07550 -0.5 -1.6 acetylornithine deacetylase compare
LRK53_RS08450 -0.5 -1.5 YerC/YecD family TrpR-related protein compare
LRK53_RS03225 -0.5 -1.7 hypothetical protein compare
LRK53_RS11610 -0.5 -1.8 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS11095 -0.5 -2.1 hypothetical protein compare
LRK53_RS03145 -0.5 -1.5 IS1595 family transposase compare
LRK53_RS11965 -0.5 -2.1 DNA repair protein RecO compare
LRK53_RS00260 -0.5 -1.4 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK53_RS14800 -0.5 -2.5 DUF1631 domain-containing protein compare
LRK53_RS02300 -0.5 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in nldm low iron experiments

For nldm low iron Iron (II) sulfate heptahydrate across organisms