Experiment set4S73 for Rhodanobacter sp000427505 FW510-R12

Compare to:

NLDM_defined low iron; midlog

200 most important genes:

  gene name fitness t score description  
LRK53_RS00690 -4.7 -3.0 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS00685 -3.3 -15.2 SIS domain-containing protein compare
LRK53_RS11805 -2.9 -3.4 heavy metal translocating P-type ATPase compare
LRK53_RS11795 -2.6 -2.5 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS09265 -2.6 -2.0 GntR family transcriptional regulator compare
LRK53_RS09660 -2.3 -1.5 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS01585 -2.2 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS04185 -2.2 -7.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS11780 -2.2 -5.8 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS08795 -2.1 -3.3 MBL fold metallo-hydrolase compare
LRK53_RS14670 -2.1 -3.6 purine-nucleoside phosphorylase compare
LRK53_RS03160 -2.1 -3.4 homoserine kinase compare
LRK53_RS05125 -2.0 -8.7 potassium transporter Kup compare
LRK53_RS18080 -2.0 -5.7 glucose-6-phosphate isomerase compare
LRK53_RS14770 -1.8 -5.2 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS03155 -1.8 -6.1 threonine synthase compare
LRK53_RS11155 -1.8 -9.8 glutamine-hydrolyzing GMP synthase compare
LRK53_RS05555 -1.7 -2.0 NfeD family protein compare
LRK53_RS03085 -1.7 -7.3 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS19175 -1.7 -2.9 hypothetical protein compare
LRK53_RS14790 -1.7 -2.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS06850 -1.7 -1.5 protein translocase subunit SecD compare
LRK53_RS03095 -1.7 -3.4 dihydroxy-acid dehydratase compare
LRK53_RS19140 -1.7 -2.4 hypothetical protein compare
LRK53_RS09090 -1.6 -12.7 polyribonucleotide nucleotidyltransferase compare
LRK53_RS11425 -1.6 -3.0 RnfH family protein compare
LRK53_RS19110 -1.5 -1.5 hypothetical protein compare
LRK53_RS04190 -1.5 -5.0 dihydrolipoyl dehydrogenase compare
LRK53_RS05740 -1.5 -1.3 chemotaxis protein CheW compare
LRK53_RS09435 -1.4 -0.9 malate dehydrogenase compare
LRK53_RS12250 -1.4 -10.0 Mth938-like domain-containing protein compare
LRK53_RS03090 -1.4 -8.4 ketol-acid reductoisomerase compare
LRK53_RS03165 -1.4 -2.9 homoserine dehydrogenase compare
LRK53_RS06870 -1.4 -1.7 SUF system Fe-S cluster assembly regulator compare
LRK53_RS04075 -1.3 -11.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS03120 -1.3 -5.4 2-isopropylmalate synthase compare
LRK53_RS03065 -1.3 -1.5 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS14840 -1.3 -3.8 trypsin-like peptidase domain-containing protein compare
LRK53_RS06035 -1.3 -1.8 helix-turn-helix domain-containing protein compare
LRK53_RS15655 -1.3 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS14895 -1.3 -2.0 STAS domain-containing protein compare
LRK53_RS13020 -1.3 -1.4 sulfur transferase domain-containing protein compare
LRK53_RS03695 -1.2 -9.4 glutamate--cysteine ligase compare
LRK53_RS08310 -1.2 -10.5 chorismate synthase compare
LRK53_RS03115 -1.2 -7.3 branched-chain amino acid transaminase compare
LRK53_RS07600 -1.2 -1.4 ABC transporter ATP-binding protein compare
LRK53_RS03330 -1.2 -1.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS09730 -1.2 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS05905 -1.1 -1.5 thymidylate synthase compare
LRK53_RS06670 -1.1 -2.5 RIP metalloprotease RseP compare
LRK53_RS13565 -1.1 -1.5 isocitrate dehydrogenase compare
LRK53_RS03545 -1.1 -1.5 DUF2249 domain-containing protein compare
LRK53_RS10200 -1.1 -1.5 TraR/DksA C4-type zinc finger protein compare
LRK53_RS14400 -1.1 -1.1 TetR family transcriptional regulator compare
LRK53_RS09760 -1.1 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS02455 -1.1 -2.3 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS16200 -1.1 -4.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK53_RS08455 -1.1 -3.0 ATP phosphoribosyltransferase compare
LRK53_RS09830 -1.0 -2.1 phosphoglycerate mutase compare
LRK53_RS03110 -1.0 -4.8 3-isopropylmalate dehydratase large subunit compare
LRK53_RS05220 -1.0 -3.2 nucleoside deaminase compare
LRK53_RS00945 -1.0 -1.8 helix-turn-helix domain-containing protein compare
LRK53_RS06545 -1.0 -3.6 TIGR02099 family protein compare
LRK53_RS11790 -1.0 -3.1 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS02150 -1.0 -2.1 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS05685 -0.9 -7.5 type IV pilus twitching motility protein PilT compare
LRK53_RS08205 -0.9 -1.7 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS02850 -0.9 -0.9 response regulator compare
LRK53_RS11565 -0.9 -2.4 nucleoside diphosphate kinase regulator compare
LRK53_RS18770 -0.9 -1.4 hypothetical protein compare
LRK53_RS15725 -0.9 -7.8 PTS fructose transporter subunit IIA compare
LRK53_RS09315 -0.9 -2.4 pseudouridine synthase compare
LRK53_RS11005 -0.9 -2.1 Tn3 family resolvase compare
LRK53_RS15715 -0.9 -8.1 HPr(Ser) kinase/phosphatase compare
LRK53_RS05390 -0.9 -5.9 serine hydroxymethyltransferase compare
LRK53_RS08240 -0.9 -5.9 dCTP deaminase compare
LRK53_RS16495 -0.9 -2.4 adenosylhomocysteinase compare
LRK53_RS03100 -0.9 -5.5 3-isopropylmalate dehydrogenase compare
LRK53_RS04265 -0.9 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS03185 -0.9 -1.8 S-ribosylhomocysteine lyase compare
LRK53_RS04285 -0.9 -4.3 phosphoglycerate kinase compare
LRK53_RS00395 -0.9 -2.5 SDR family oxidoreductase compare
LRK53_RS15705 -0.9 -5.5 RNA polymerase factor sigma-54 compare
LRK53_RS09420 -0.8 -1.0 YidB family protein compare
LRK53_RS13140 -0.8 -6.3 D-serine/D-alanine/glycine transporter compare
LRK53_RS07490 -0.8 -3.5 phytoene synthase compare
LRK53_RS12830 -0.8 -1.9 YkgJ family cysteine cluster protein compare
LRK53_RS19020 -0.8 -2.8 hypothetical protein compare
LRK53_RS03125 -0.8 -5.5 hypothetical protein compare
LRK53_RS11265 -0.8 -2.3 hypothetical protein compare
LRK53_RS18595 -0.8 -2.5 GtrA family protein compare
LRK53_RS15055 -0.8 -2.8 flagellar hook-length control protein FliK compare
LRK53_RS16720 -0.8 -7.4 citrate synthase compare
LRK53_RS07450 -0.8 -0.6 50S ribosomal protein L19 compare
LRK53_RS18860 -0.8 -1.2 hypothetical protein compare
LRK53_RS04590 -0.8 -5.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS05410 -0.8 -2.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK53_RS13510 -0.8 -5.3 polynucleotide adenylyltransferase PcnB compare
LRK53_RS03105 -0.8 -4.4 3-isopropylmalate dehydratase small subunit compare
LRK53_RS16300 -0.8 -1.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS05295 -0.8 -7.1 phosphoribosylformylglycinamidine synthase compare
LRK53_RS18295 -0.8 -1.7 hypothetical protein compare
LRK53_RS09170 -0.7 -1.6 cupin domain-containing protein compare
LRK53_RS12280 -0.7 -1.9 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS18075 -0.7 -4.2 transaldolase compare
LRK53_RS06845 -0.7 -2.3 preprotein translocase subunit YajC compare
LRK53_RS07580 -0.7 -2.0 IS256 family transposase compare
LRK53_RS15895 -0.7 -6.4 glycosyltransferase compare
LRK53_RS14640 -0.7 -1.1 MoaD/ThiS family protein compare
LRK53_RS05680 -0.7 -2.1 pyrroline-5-carboxylate reductase compare
LRK53_RS18155 -0.7 -0.9 hypothetical protein compare
LRK53_RS09755 -0.7 -5.2 prephenate dehydratase compare
LRK53_RS17765 -0.7 -2.9 lipoyl synthase compare
LRK53_RS13625 -0.7 -1.3 carbon storage regulator CsrA compare
LRK53_RS18025 -0.7 -0.7 hypothetical protein compare
LRK53_RS07200 -0.7 -1.6 hypothetical protein compare
LRK53_RS04580 -0.7 -1.5 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS17760 -0.7 -4.4 carboxy terminal-processing peptidase compare
LRK53_RS04445 -0.7 -1.0 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS17125 -0.7 -5.5 fructose-bisphosphate aldolase class I compare
LRK53_RS15250 -0.7 -4.3 membrane assembly protein AsmA compare
LRK53_RS18120 -0.7 -1.1 energy transducer TonB compare
LRK53_RS17405 -0.7 -5.4 ferredoxin--NADP reductase compare
LRK53_RS15105 -0.7 -2.6 flagellar export chaperone FliS compare
LRK53_RS05725 -0.6 -4.5 glutathione synthase compare
LRK53_RS14890 -0.6 -2.4 hypothetical protein compare
LRK53_RS00680 -0.6 -1.4 GntR family transcriptional regulator compare
LRK53_RS17895 -0.6 -0.7 phosphomannomutase/phosphoglucomutase compare
LRK53_RS13525 -0.6 -2.6 ferredoxin family protein compare
LRK53_RS08450 -0.6 -2.2 YerC/YecD family TrpR-related protein compare
LRK53_RS09520 -0.6 -0.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS16900 -0.6 -2.2 ribose-5-phosphate isomerase RpiA compare
LRK53_RS08225 -0.6 -1.6 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS14010 -0.6 -1.6 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS02545 -0.6 -1.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS07925 -0.6 -2.7 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS05170 -0.6 -1.2 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS12880 -0.6 -1.0 hypothetical protein compare
LRK53_RS17145 -0.6 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS05015 -0.6 -2.3 LacI family DNA-binding transcriptional regulator compare
LRK53_RS17265 -0.6 -2.0 FTR1 family protein compare
LRK53_RS04500 -0.6 -3.3 glycine cleavage system protein GcvH compare
LRK53_RS08730 -0.6 -1.2 hypothetical protein compare
LRK53_RS17995 -0.6 -2.7 acetyl-CoA C-acetyltransferase compare
LRK53_RS05470 -0.6 -2.6 hypothetical protein compare
LRK53_RS10450 -0.6 -2.2 FUSC family protein compare
LRK53_RS07045 -0.6 -1.1 response regulator compare
LRK53_RS17410 -0.6 -1.4 DUF456 domain-containing protein compare
LRK53_RS02645 -0.6 -2.3 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS02570 -0.6 -2.8 alpha/beta hydrolase compare
LRK53_RS03410 -0.6 -2.0 SCP2 sterol-binding domain-containing protein compare
LRK53_RS07980 -0.6 -0.9 GNAT family N-acetyltransferase compare
LRK53_RS12740 -0.6 -2.0 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS11285 -0.6 -1.4 tRNA-binding protein compare
LRK53_RS11095 -0.6 -1.9 hypothetical protein compare
LRK53_RS15175 -0.6 -1.4 flagellar basal body rod protein FlgB compare
LRK53_RS11955 -0.6 -3.6 hypothetical protein compare
LRK53_RS15720 -0.6 -3.8 RNase adapter RapZ compare
LRK53_RS18390 -0.6 -1.3 hypothetical protein compare
LRK53_RS08070 -0.5 -2.6 DUF411 domain-containing protein compare
LRK53_RS01530 -0.5 -0.5 YiiD C-terminal domain-containing protein compare
LRK53_RS12545 -0.5 -2.0 hypothetical protein compare
LRK53_RS10280 -0.5 -0.5 2-oxo-3-hexenedioate decarboxylase compare
LRK53_RS16890 -0.5 -2.5 5-formyltetrahydrofolate cyclo-ligase compare
LRK53_RS13770 -0.5 -2.2 protease HtpX compare
LRK53_RS14850 -0.5 -3.4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
LRK53_RS12115 -0.5 -3.4 SurA N-terminal domain-containing protein compare
LRK53_RS04475 -0.5 -3.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS03630 -0.5 -4.4 fatty acid desaturase compare
LRK53_RS12585 -0.5 -1.9 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS14055 -0.5 -1.7 hypothetical protein compare
LRK53_RS11330 -0.5 -1.4 (d)CMP kinase compare
LRK53_RS02135 -0.5 -1.4 hypothetical protein compare
LRK53_RS04275 -0.5 -1.8 co-chaperone DjlA compare
LRK53_RS00805 -0.5 -3.6 LacI family DNA-binding transcriptional regulator compare
LRK53_RS14090 -0.5 -1.2 ABC transporter ATP-binding protein compare
LRK53_RS07635 -0.5 -1.0 FUSC family protein compare
LRK53_RS07105 -0.5 -1.8 RNA polymerase-associated protein RapA compare
LRK53_RS18070 -0.5 -1.5 HAD family hydrolase compare
LRK53_RS18260 -0.5 -2.1 DUF4400 domain-containing protein compare
LRK53_RS18830 -0.5 -1.1 TraV family lipoprotein compare
LRK53_RS15035 -0.5 -1.4 flagellar biosynthetic protein FliO compare
LRK53_RS12700 -0.5 -1.4 DUF3293 domain-containing protein compare
LRK53_RS11355 -0.5 -2.7 transcription elongation factor GreA compare
LRK53_RS04730 -0.5 -4.3 APC family permease compare
LRK53_RS04685 -0.5 -2.4 2OG-Fe dioxygenase family protein compare
LRK53_RS13715 -0.5 -2.4 phosphotransferase compare
LRK53_RS15965 -0.5 -1.9 (2Fe-2S)-binding protein compare
LRK53_RS00905 -0.5 -2.2 response regulator compare
LRK53_RS11455 -0.5 -1.3 NfuA family Fe-S biogenesis protein compare
LRK53_RS02445 -0.5 -2.2 LacI family transcriptional regulator compare
LRK53_RS11660 -0.5 -1.5 transcriptional regulator compare
LRK53_RS06105 -0.5 -2.6 RNA polymerase sigma factor compare
LRK53_RS13085 -0.5 -2.0 SCO family protein compare
LRK53_RS09710 -0.5 -1.8 high frequency lysogenization protein HflD compare
LRK53_RS14800 -0.4 -2.5 DUF1631 domain-containing protein compare
LRK53_RS08575 -0.4 -1.3 RNA-binding S4 domain-containing protein compare
LRK53_RS08350 -0.4 -1.0 tryptophan synthase subunit beta compare
LRK53_RS08485 -0.4 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS16020 -0.4 -1.7 RDD family protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in nldm low iron experiments

For nldm low iron Iron (II) sulfate heptahydrate across organisms