Experiment set4S7 for Pseudomonas sp. RS175

Compare to:

D-Fructose carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_02824 -5.5 -6.6 3-isopropylmalate dehydratase large subunit compare
PFR28_03860 -5.3 -6.2 putative murein peptide carboxypeptidase compare
PFR28_05016 -5.2 -15.6 Glutamate synthase [NADPH] small chain compare
PFR28_02823 -5.1 -3.5 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00106 -5.1 -7.0 Tagatose-6-phosphate kinase compare
PFR28_02821 -5.1 -16.5 3-isopropylmalate dehydrogenase compare
PFR28_05125 -5.0 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_05015 -4.8 -26.6 Glutamate synthase [NADPH] large chain compare
PFR28_00107 -4.7 -14.8 hypothetical protein conserved
PFR28_03697 -4.7 -12.1 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04071 -4.6 -2.0 Multifunctional CCA protein compare
PFR28_00186 -4.4 -8.5 ATP phosphoribosyltransferase compare
PFR28_04932 -4.1 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_00187 -4.1 -9.9 Histidinol dehydrogenase compare
PFR28_04278 -4.1 -11.5 Dihydroxy-acid dehydratase compare
PFR28_04986 -4.1 -6.8 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04930 -4.0 -11.5 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03724 -3.9 -5.3 Glucose-6-phosphate isomerase compare
PFR28_00560 -3.9 -14.0 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_05105 -3.8 -6.7 Phosphoserine phosphatase SerB2 compare
PFR28_04933 -3.7 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04517 -3.6 -16.3 Oxaloacetate decarboxylase alpha chain compare
PFR28_04929 -3.6 -7.7 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00105 -3.6 -9.1 hypothetical protein conserved
PFR28_00305 -3.6 -10.9 2-isopropylmalate synthase compare
PFR28_02810 -3.5 -17.8 O-succinylhomoserine sulfhydrylase compare
PFR28_01142 -3.5 -19.3 Transaldolase compare
PFR28_00573 -3.5 -14.2 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04518 -3.5 -14.5 2-oxoglutarate carboxylase small subunit compare
PFR28_04246 -3.5 -11.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_01366 -3.5 -10.2 Sulfite reductase [ferredoxin] compare
PFR28_02603 -3.5 -7.9 Siroheme synthase compare
PFR28_04519 -3.4 -9.2 HTH-type transcriptional activator CmpR compare
PFR28_03596 -3.3 -4.5 Transcriptional regulator MraZ compare
PFR28_02811 -3.3 -3.2 Amidophosphoribosyltransferase compare
PFR28_03218 -3.3 -7.8 Phosphoribosylglycinamide formyltransferase compare
PFR28_01365 -3.1 -6.8 hypothetical protein compare
PFR28_04985 -3.1 -5.1 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00098 -3.1 -9.3 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04202 -3.0 -4.1 5,10-methylenetetrahydrofolate reductase compare
PFR28_04565 -2.9 -14.6 Protein RarD compare
PFR28_04030 -2.9 -4.0 hypothetical protein compare
PFR28_03698 -2.9 -7.2 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04245 -2.8 -13.4 Homoserine O-succinyltransferase compare
PFR28_01930 -2.8 -2.7 HTH-type transcriptional regulator McbR compare
PFR28_00188 -2.8 -11.1 Histidinol-phosphate aminotransferase compare
PFR28_03363 -2.8 -16.8 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04842 -2.7 -5.8 D-3-phosphoglycerate dehydrogenase compare
PFR28_04832 -2.7 -11.7 putative phosphatase compare
PFR28_03388 -2.7 -13.3 Quinolinate synthase A compare
PFR28_04628 -2.6 -2.5 Thiol:disulfide interchange protein DsbA compare
PFR28_03714 -2.6 -13.2 RNA polymerase-binding transcription factor DksA compare
PFR28_00926 -2.4 -2.3 hypothetical protein compare
PFR28_04564 -2.4 -12.7 Aspartate-semialdehyde dehydrogenase compare
PFR28_00193 -2.3 -10.1 Sulfate adenylyltransferase subunit 2 compare
PFR28_03282 -2.3 -9.0 Arginine N-succinyltransferase subunit alpha compare
PFR28_00194 -2.1 -10.3 Bifunctional enzyme CysN/CysC compare
PFR28_03856 -2.1 -1.4 LPS-assembly lipoprotein LptE compare
PFR28_03699 -2.1 -2.0 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03217 -2.1 -1.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_04834 -2.0 -13.6 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04902 -2.0 -7.0 Inner membrane protein YgaZ compare
PFR28_04903 -2.0 -7.2 hypothetical protein compare
PFR28_04887 -2.0 -4.7 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_00325 -1.9 -4.8 Inner membrane protein YpjD compare
PFR28_04874 -1.9 -9.1 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_01312 -1.9 -1.8 HTH-type transcriptional regulator NorG compare
PFR28_00561 -1.9 -1.3 Phosphogluconate dehydratase compare
PFR28_00966 -1.9 -11.8 HTH-type transcriptional regulator CysB compare
PFR28_02403 -1.8 -2.0 Na(+)/H(+) antiporter subunit C1 compare
PFR28_04308 -1.8 -2.1 Amino-acid acetyltransferase compare
PFR28_01644 -1.7 -2.8 hypothetical protein compare
PFR28_03414 -1.7 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04103 -1.7 -7.2 Biotin synthase compare
PFR28_01014 -1.7 -2.5 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_01156 -1.7 -5.6 hypothetical protein compare
PFR28_03463 -1.6 -1.8 hypothetical protein compare
PFR28_00689 -1.5 -11.4 L-aspartate oxidase compare
PFR28_00277 -1.5 -1.9 Queuine tRNA-ribosyltransferase compare
PFR28_01376 -1.5 -1.7 hypothetical protein compare
PFR28_01855 -1.4 -1.3 Hypoxic response protein 1 compare
PFR28_01362 -1.4 -1.6 hypothetical protein compare
PFR28_01094 -1.4 -4.9 hypothetical protein compare
PFR28_03653 -1.4 -3.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_02846 -1.4 -4.9 Adaptive-response sensory-kinase SasA compare
PFR28_01419 -1.4 -2.2 hypothetical protein compare
PFR28_03130 -1.3 -3.1 Streptothricin hydrolase compare
PFR28_05139 -1.3 -1.9 hypothetical protein compare
PFR28_04436 -1.3 -5.9 hypothetical protein compare
PFR28_05244 -1.3 -8.1 Copper-exporting P-type ATPase compare
PFR28_02344 -1.2 -5.8 Chaperone protein HscC compare
PFR28_02925 -1.2 -7.9 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_00756 -1.2 -2.2 ATP-dependent RNA helicase RhlE compare
PFR28_03362 -1.2 -3.4 hypothetical protein compare
PFR28_02800 -1.2 -1.1 hypothetical protein compare
PFR28_00913 -1.2 -5.4 Integration host factor subunit beta compare
PFR28_04366 -1.2 -7.6 Sensory transduction protein LytR compare
PFR28_03412 -1.2 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00427 -1.2 -8.5 RNA polymerase sigma factor RpoS compare
PFR28_03191 -1.2 -1.1 hypothetical protein compare
PFR28_05199 -1.1 -3.9 Precorrin-6A reductase compare
PFR28_02167 -1.1 -3.2 hypothetical protein compare
PFR28_01095 -1.1 -4.9 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_00602 -1.1 -1.2 hypothetical protein compare
PFR28_04072 -1.1 -2.6 Bifunctional folate synthesis protein compare
PFR28_00851 -1.1 -1.0 Flagellum site-determining protein YlxH compare
PFR28_00159 -1.1 -5.6 hypothetical protein compare
PFR28_05000 -1.1 -1.5 Cell division protein FtsN compare
PFR28_01080 -1.1 -6.6 Oxygen-independent coproporphyrinogen III oxidase compare
PFR28_05212 -1.1 -6.9 Sensor histidine kinase RcsC compare
PFR28_02478 -1.1 -2.2 hypothetical protein compare
PFR28_00690 -1.0 -3.8 RNA polymerase sigma-H factor compare
PFR28_05232 -1.0 -2.8 hypothetical protein compare
PFR28_00918 -1.0 -4.6 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_04709 -1.0 -1.7 Peroxiredoxin OsmC compare
PFR28_00241 -1.0 -2.8 Disulfide bond formation protein B compare
PFR28_01081 -1.0 -1.7 hypothetical protein compare
PFR28_04485 -1.0 -2.8 Phosphate-specific transport system accessory protein PhoU compare
PFR28_00525 -1.0 -2.8 Outer membrane lipoprotein SlyB compare
PFR28_03635 -1.0 -3.1 Malate:quinone oxidoreductase compare
PFR28_01060 -1.0 -3.3 HTH-type transcriptional repressor NanR compare
PFR28_04566 -1.0 -6.3 4-chloro-allylglycine synthase compare
PFR28_01395 -1.0 -1.5 D-beta-hydroxybutyrate dehydrogenase compare
PFR28_02237 -1.0 -1.9 hypothetical protein compare
PFR28_00988 -1.0 -5.5 Sensor histidine kinase RcsC compare
PFR28_00403 -1.0 -2.7 Regulator of sigma-E protease RseP compare
PFR28_00276 -1.0 -3.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PFR28_02345 -1.0 -5.3 hypothetical protein compare
PFR28_01572 -1.0 -1.4 hypothetical protein compare
PFR28_02009 -1.0 -1.2 HTH-type transcriptional regulator PgrR compare
PFR28_04252 -0.9 -5.8 Thiazole synthase compare
PFR28_01092 -0.9 -2.4 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_01084 -0.9 -1.8 hypothetical protein compare
PFR28_00695 -0.9 -1.5 Sulfur carrier protein TusA compare
PFR28_01425 -0.9 -2.9 hypothetical protein compare
PFR28_01227 -0.9 -1.9 Trigger factor compare
PFR28_02283 -0.9 -1.4 hypothetical protein compare
PFR28_01182 -0.9 -1.1 hypothetical protein compare
PFR28_00436 -0.9 -2.5 hypothetical protein compare
PFR28_04378 -0.9 -2.7 Tyrosine recombinase XerC compare
PFR28_04584 -0.9 -2.5 putative chromosome-partitioning protein ParB compare
PFR28_04048 -0.9 -5.5 Phosphoglycolate phosphatase compare
PFR28_04492 -0.9 -5.9 Putative glucose-6-phosphate 1-epimerase compare
PFR28_00563 -0.9 -1.1 Transcriptional regulatory protein OmpR compare
PFR28_03657 -0.9 -3.5 Beta-barrel assembly-enhancing protease compare
PFR28_03784 -0.9 -4.3 Energy-dependent translational throttle protein EttA compare
PFR28_01154 -0.9 -2.1 hypothetical protein compare
PFR28_04100 -0.9 -4.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04052 -0.8 -7.0 hypothetical protein compare
PFR28_02226 -0.8 -2.3 Nitric oxide reductase subunit C compare
PFR28_00709 -0.8 -2.0 hypothetical protein compare
PFR28_04435 -0.8 -3.5 ATP-dependent DNA helicase RecG compare
PFR28_00861 -0.8 -5.3 Chemotaxis protein CheW compare
PFR28_02346 -0.8 -4.4 hypothetical protein compare
PFR28_04051 -0.8 -4.6 Inner membrane ABC transporter permease protein YdcV compare
PFR28_00448 -0.8 -1.9 hypothetical protein compare
PFR28_04102 -0.8 -4.5 8-amino-7-oxononanoate synthase compare
PFR28_00622 -0.8 -2.0 Beta-ketoadipyl-CoA thiolase compare
PFR28_03704 -0.8 -4.7 hypothetical protein compare
PFR28_02268 -0.8 -0.8 hypothetical protein compare
PFR28_04782 -0.8 -5.5 hypothetical protein compare
PFR28_01078 -0.8 -2.2 Adenine phosphoribosyltransferase compare
PFR28_01313 -0.8 -1.5 hypothetical protein compare
PFR28_03178 -0.8 -1.3 tRNA-Asp compare
PFR28_04023 -0.8 -1.8 Bifunctional ligase/repressor BirA compare
PFR28_01314 -0.8 -2.1 hypothetical protein compare
PFR28_01153 -0.8 -1.0 hypothetical protein compare
PFR28_03413 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04931 -0.7 -1.3 hypothetical protein compare
PFR28_00853 -0.7 -3.9 Chemotaxis protein CheY compare
PFR28_00139 -0.7 -4.1 HTH-type transcriptional regulator LutR compare
PFR28_02894 -0.7 -2.2 putative oxidoreductase compare
PFR28_02136 -0.7 -1.7 hypothetical protein compare
PFR28_01042 -0.7 -1.0 hypothetical protein compare
PFR28_03233 -0.7 -2.3 NAD(P)H dehydrogenase (quinone) compare
PFR28_02969 -0.7 -1.3 hypothetical protein compare
PFR28_04144 -0.7 -2.6 hypothetical protein compare
PFR28_01181 -0.7 -3.7 hypothetical protein compare
PFR28_03666 -0.7 -0.9 hypothetical protein compare
PFR28_00855 -0.7 -4.2 hypothetical protein compare
PFR28_03865 -0.7 -3.7 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01317 -0.7 -5.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_00688 -0.7 -0.4 hypothetical protein compare
PFR28_05201 -0.7 -1.6 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_01524 -0.7 -1.6 hypothetical protein compare
PFR28_03427 -0.7 -3.2 Sensor histidine kinase RcsC compare
PFR28_02050 -0.7 -2.4 hypothetical protein compare
PFR28_04641 -0.7 -2.1 hypothetical protein compare
PFR28_02426 -0.7 -4.5 HTH-type transcriptional regulator MurR compare
PFR28_03255 -0.7 -5.3 Chemotaxis protein methyltransferase Cher2 compare
PFR28_00962 -0.7 -3.9 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
PFR28_00873 -0.7 -2.8 hypothetical protein compare
PFR28_03240 -0.7 -1.1 IS110 family transposase ISPfl1 compare
PFR28_03959 -0.7 -3.6 Outer membrane protein W compare
PFR28_04244 -0.7 -2.5 hypothetical protein compare
PFR28_03719 -0.7 -2.3 Poly(A) polymerase I compare
PFR28_00928 -0.7 -1.2 putative sugar transferase EpsL compare
PFR28_03281 -0.6 -2.7 Arginine N-succinyltransferase subunit beta compare
PFR28_04208 -0.6 -2.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_02442 -0.6 -2.2 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Fructose in Pseudomonas sp. RS175

For carbon source D-Fructose across organisms