Experiment set4S67 for Pseudomonas segetis P6
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Group: in plantaMedia: + Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Culturing: Pseudo_segetis_P6_ML4b, pot, at 26 (C)
By: Marta Torres on 6-Nov-23
Specific Phenotypes
For 25 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Puromycin biosynthesis
- Glycine, serine and threonine metabolism
- Lysine degradation
- Nucleotide sugars metabolism
- Peptidoglycan biosynthesis
- alpha-Linolenic acid metabolism
- Trinitrotoluene degradation
- One carbon pool by folate
- Biotin metabolism
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Nitrogen metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cis-cyclopropane fatty acid (CFA) biosynthesis | 1 | 1 | 1 |
| sterculate biosynthesis | 2 | 1 | 1 |
| glycine biosynthesis II | 3 | 3 | 1 |
| glycine degradation | 3 | 3 | 1 |
| glycine cleavage | 3 | 3 | 1 |
| 2-chloroacrylate degradation I | 3 | 2 | 1 |
| folate transformations III (E. coli) | 9 | 9 | 1 |
| reductive glycine pathway of autotrophic CO2 fixation | 9 | 5 | 1 |
| photorespiration III | 9 | 5 | 1 |
| photorespiration I | 9 | 5 | 1 |
| photorespiration II | 10 | 6 | 1 |
| folate transformations II (plants) | 11 | 10 | 1 |
| folate transformations I | 13 | 9 | 1 |
| mycolate biosynthesis | 205 | 20 | 3 |
| superpathway of mycolate biosynthesis | 239 | 21 | 3 |