Experiment set4S63 for Pseudomonas sp. RS175

Compare to:

Glycerol carbon source 20 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_00837 +3.6 24.8 hypothetical protein compare
PFR28_05071 +3.4 6.0 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00356 +2.6 12.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_03079 +2.0 15.8 Sensor histidine kinase RcsC compare
PFR28_03227 +1.7 11.6 Signal transduction histidine-protein kinase BarA compare
PFR28_02484 +1.7 8.7 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_01410 +1.7 12.3 Response regulator GacA compare
PFR28_03077 +1.7 15.3 Vitamin B12 transporter BtuB compare
PFR28_01270 +1.7 5.5 hypothetical protein compare
PFR28_00605 +1.5 12.1 hypothetical protein compare
PFR28_05058 +1.5 11.8 hypothetical protein compare
PFR28_01273 +1.3 6.3 hypothetical protein compare
PFR28_03680 +1.3 2.8 hypothetical protein compare
PFR28_00054 +1.3 2.1 hypothetical protein compare
PFR28_01460 +1.3 1.8 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03191 +1.2 1.3 hypothetical protein compare
PFR28_02507 +1.2 2.2 Phosphoglycolate phosphatase compare
PFR28_00405 +1.2 1.9 hypothetical protein compare
PFR28_00787 +1.2 2.8 hypothetical protein compare
PFR28_00968 +1.1 2.0 hypothetical protein compare
PFR28_00181 +1.1 7.0 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_04900 +1.1 9.0 hypothetical protein compare
PFR28_02174 +1.1 4.2 RNA pyrophosphohydrolase compare
PFR28_05070 +1.1 2.4 nebramycin 5 compare
PFR28_04830 +1.0 9.1 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00721 +0.9 2.1 hypothetical protein compare
PFR28_01888 +0.9 2.6 hypothetical protein compare
PFR28_02232 +0.9 1.1 hypothetical protein compare
PFR28_01139 +0.9 6.7 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_03748 +0.9 3.9 Ribosomal large subunit pseudouridine synthase D compare
PFR28_04203 +0.9 6.7 putative amino-acid-binding protein YxeM compare
PFR28_01375 +0.9 1.8 hypothetical protein compare
PFR28_01646 +0.9 2.8 hypothetical protein compare
PFR28_04760 +0.8 4.7 hypothetical protein compare
PFR28_02608 +0.8 1.2 DNA translocase FtsK compare
PFR28_00915 +0.8 4.5 Chain length determinant protein compare
PFR28_03778 +0.8 1.2 hypothetical protein compare
PFR28_05075 +0.8 6.0 hypothetical protein compare
PFR28_05077 +0.8 3.9 D-inositol-3-phosphate glycosyltransferase compare
PFR28_05067 +0.8 1.8 hypothetical protein compare
PFR28_01431 +0.8 2.7 Chemotaxis protein CheW compare
PFR28_04079 +0.8 6.9 Membrane-bound lytic murein transglycosylase F compare
PFR28_00095 +0.8 1.3 tRNA-Thr compare
PFR28_01575 +0.7 2.0 Ycf48-like protein compare
PFR28_00960 +0.7 6.3 hypothetical protein compare
PFR28_00304 +0.7 1.6 hypothetical protein compare
PFR28_01159 +0.7 5.0 hypothetical protein compare
PFR28_00182 +0.7 4.7 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_04721 +0.7 1.6 hypothetical protein compare
PFR28_00296 +0.7 2.6 Cytoskeleton protein RodZ compare
PFR28_01190 +0.7 1.2 hypothetical protein compare
PFR28_00451 +0.7 1.4 hypothetical protein compare
PFR28_03446 +0.7 2.3 hypothetical protein compare
PFR28_03310 +0.7 2.5 Peptidyl-tRNA hydrolase ArfB compare
PFR28_02620 +0.7 2.2 High frequency lysogenization protein HflD compare
PFR28_00179 +0.7 3.6 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03284 +0.7 4.0 HTH-type transcriptional regulator CdhR compare
PFR28_03287 +0.7 4.8 Histidine transport system permease protein HisQ compare
PFR28_01191 +0.7 3.0 Protein UmuD compare
PFR28_01855 +0.7 1.0 Hypoxic response protein 1 compare
PFR28_04712 +0.7 1.2 Dodecin compare
PFR28_00074 +0.7 2.9 Chaperone protein DnaJ compare
PFR28_02492 +0.7 1.6 Alpha-ketoglutarate-dependent dioxygenase AlkB compare
PFR28_04060 +0.7 5.3 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_00850 +0.7 4.3 Signal recognition particle 54 kDa protein compare
PFR28_02957 +0.7 1.7 Fatty acid oxidation complex subunit alpha compare
PFR28_01219 +0.7 2.0 hypothetical protein compare
PFR28_01162 +0.6 2.2 hypothetical protein compare
PFR28_04991 +0.6 3.0 hypothetical protein compare
PFR28_01484 +0.6 3.7 Spermidine-binding periplasmic protein SpuE compare
PFR28_01188 +0.6 4.3 hypothetical protein compare
PFR28_03615 +0.6 2.5 hypothetical protein compare
PFR28_01023 +0.6 2.7 hypothetical protein compare
PFR28_01123 +0.6 5.5 Transcription-repair-coupling factor compare
PFR28_04372 +0.6 1.7 Regulator of nucleoside diphosphate kinase compare
PFR28_04233 +0.6 2.3 hypothetical protein compare
PFR28_00267 +0.6 1.9 Protein rof compare
PFR28_04104 +0.6 2.5 hypothetical protein compare
PFR28_01485 +0.6 2.0 hypothetical protein compare
PFR28_03145 +0.6 2.4 allantoicase compare
PFR28_01015 +0.6 1.6 '3'-5' exonuclease DinG' transl_table=11 compare
PFR28_03285 +0.6 3.2 Histidine transport ATP-binding protein HisP compare
PFR28_04379 +0.6 2.3 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB compare
PFR28_04420 +0.6 3.7 Ribonuclease PH compare
PFR28_00896 +0.6 5.4 hypothetical protein compare
PFR28_02718 +0.6 3.0 hypothetical protein compare
PFR28_00068 +0.6 0.6 hypothetical protein compare
PFR28_01308 +0.6 2.6 hypothetical protein compare
PFR28_05097 +0.6 2.0 hypothetical protein compare
PFR28_01192 +0.6 4.6 Protein UmuC compare
PFR28_04204 +0.6 4.4 ATP-dependent RNA helicase RhlE compare
PFR28_00180 +0.6 3.1 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_00688 +0.6 0.7 hypothetical protein compare
PFR28_03547 +0.6 4.1 Transcriptional regulator DauR compare
PFR28_00336 +0.6 1.4 hypothetical protein compare
PFR28_03723 +0.6 4.0 Aspartate 1-decarboxylase compare
PFR28_01174 +0.6 2.4 hypothetical protein compare
PFR28_01367 +0.6 1.9 hypothetical protein compare
PFR28_00941 +0.6 0.9 Potassium-transporting ATPase KdpC subunit compare
PFR28_01071 +0.6 3.9 hypothetical protein compare
PFR28_00740 +0.6 3.1 Beta-ketodecanoyl-[acyl-carrier-protein] synthase compare
PFR28_02451 +0.6 1.8 Biotin biosynthesis cytochrome P450 compare
PFR28_03530 +0.6 0.6 hypothetical protein compare
PFR28_03386 +0.6 2.2 Major cold shock protein CspA compare
PFR28_03391 +0.6 2.4 Copper resistance protein C compare
PFR28_03195 +0.6 1.8 hypothetical protein compare
PFR28_04529 +0.6 2.0 hypothetical protein compare
PFR28_03086 +0.6 4.2 Chaperone protein HtpG compare
PFR28_00780 +0.5 0.6 hypothetical protein compare
PFR28_04098 +0.5 3.2 hypothetical protein compare
PFR28_03243 +0.5 3.3 Virulence sensor histidine kinase PhoQ compare
PFR28_04979 +0.5 4.4 Glucans biosynthesis glucosyltransferase H compare
PFR28_02872 +0.5 0.8 hypothetical protein compare
PFR28_04460 +0.5 1.6 hypothetical protein compare
PFR28_04904 +0.5 3.8 HTH-type transcriptional regulator HdfR compare
PFR28_02613 +0.5 3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_05179 +0.5 2.1 Acetyltransferase compare
PFR28_01279 +0.5 3.5 hypothetical protein compare
PFR28_05041 +0.5 1.2 Thioredoxin 2 compare
PFR28_00164 +0.5 2.0 hypothetical protein compare
PFR28_03849 +0.5 2.1 PhoH-like protein compare
PFR28_02742 +0.5 2.1 hypothetical protein compare
PFR28_00197 +0.5 2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD compare
PFR28_01160 +0.5 2.6 hypothetical protein compare
PFR28_03121 +0.5 2.0 hypothetical protein compare
PFR28_04023 +0.5 1.4 Bifunctional ligase/repressor BirA compare
PFR28_04813 +0.5 1.0 hypothetical protein compare
PFR28_01744 +0.5 2.0 hypothetical protein compare
PFR28_00250 +0.5 2.8 hypothetical protein compare
PFR28_00100 +0.5 3.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_03664 +0.5 0.9 Ribosome-binding ATPase YchF compare
PFR28_02648 +0.5 1.7 Nodulation protein D 2 compare
PFR28_04620 +0.5 1.7 Zinc uptake regulation protein compare
PFR28_01982 +0.5 2.1 tRNA (adenine(22)-N(1))-methyltransferase compare
PFR28_03954 +0.5 2.0 hypothetical protein compare
PFR28_02455 +0.5 1.5 hypothetical protein compare
PFR28_00897 +0.5 4.2 hypothetical protein compare
PFR28_01186 +0.5 2.8 hypothetical protein compare
PFR28_03827 +0.5 1.6 HTH-type transcriptional regulator LrpC compare
PFR28_04806 +0.5 3.0 hypothetical protein compare
PFR28_01007 +0.5 2.4 hypothetical protein compare
PFR28_01170 +0.5 3.9 hypothetical protein compare
PFR28_04897 +0.5 2.3 Agmatine deiminase compare
PFR28_02802 +0.5 2.4 hypothetical protein compare
PFR28_04228 +0.5 2.2 hypothetical protein compare
PFR28_00829 +0.5 3.0 Signal transduction histidine-protein kinase AtoS compare
PFR28_00169 +0.5 1.5 Phosphocarrier protein NPr compare
PFR28_05078 +0.5 0.6 hypothetical protein compare
PFR28_01177 +0.5 1.8 hypothetical protein compare
PFR28_04286 +0.5 3.2 hypothetical protein compare
PFR28_01587 +0.5 1.3 hypothetical protein compare
PFR28_04586 +0.5 2.2 Ribosomal RNA small subunit methyltransferase G compare
PFR28_03046 +0.5 2.3 hypothetical protein compare
PFR28_03178 +0.5 1.0 tRNA-Asp compare
PFR28_04418 +0.5 0.9 Exodeoxyribonuclease compare
PFR28_01167 +0.5 2.9 Putative prophage major tail sheath protein compare
PFR28_01161 +0.5 3.2 hypothetical protein compare
PFR28_05022 +0.5 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
PFR28_00989 +0.4 2.5 hypothetical protein compare
PFR28_01666 +0.4 1.1 hypothetical protein compare
PFR28_04031 +0.4 3.9 Anhydro-N-acetylmuramic acid kinase compare
PFR28_00371 +0.4 1.7 hypothetical protein compare
PFR28_03136 +0.4 0.9 hypothetical protein compare
PFR28_05006 +0.4 4.0 Penicillin-binding protein 1A compare
PFR28_03580 +0.4 2.8 hypothetical protein compare
PFR28_01376 +0.4 0.6 hypothetical protein compare
PFR28_01269 +0.4 1.7 Putrescine importer PuuP compare
PFR28_01136 +0.4 1.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PFR28_04698 +0.4 2.3 hypothetical protein compare
PFR28_00476 +0.4 0.6 hypothetical protein compare
PFR28_03823 +0.4 3.0 hypothetical protein compare
PFR28_02252 +0.4 3.1 hypothetical protein compare
PFR28_04327 +0.4 2.0 hypothetical protein compare
PFR28_02212 +0.4 1.1 Ubiquinone biosynthesis accessory factor UbiJ compare
PFR28_01950 +0.4 2.0 hypothetical protein compare
PFR28_01751 +0.4 1.1 putative type II secretion system protein HxcR compare
PFR28_00729 +0.4 2.6 5-oxoprolinase subunit B compare
PFR28_01370 +0.4 4.0 hypothetical protein compare
PFR28_03619 +0.4 3.3 hypothetical protein compare
PFR28_02594 +0.4 1.7 Acetyltransferase compare
PFR28_04752 +0.4 1.8 hypothetical protein compare
PFR28_05176 +0.4 1.2 Chaperone modulatory protein CbpM compare
PFR28_00791 +0.4 3.3 Outer membrane protein assembly factor BamA compare
PFR28_02797 +0.4 2.4 hypothetical protein compare
PFR28_01582 +0.4 2.1 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PFR28_03842 +0.4 3.7 Sensor histidine kinase RcsC compare
PFR28_01179 +0.4 1.8 hypothetical protein compare
PFR28_01176 +0.4 1.5 hypothetical protein compare
PFR28_01065 +0.4 2.6 hypothetical protein compare
PFR28_02057 +0.4 0.9 2-oxo-tetronate isomerase compare
PFR28_03783 +0.4 2.1 Transcription elongation factor GreB compare
PFR28_02127 +0.4 0.8 hypothetical protein compare
PFR28_03429 +0.4 2.4 Thiamine-phosphate synthase compare
PFR28_01171 +0.4 2.5 hypothetical protein compare
PFR28_01736 +0.4 1.8 NADH oxidase compare
PFR28_00427 +0.4 3.4 RNA polymerase sigma factor RpoS compare
PFR28_04922 +0.4 1.1 hypothetical protein compare
PFR28_01359 +0.4 0.6 hypothetical protein compare
PFR28_01169 +0.4 1.3 hypothetical protein compare
PFR28_01250 +0.4 3.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Pseudomonas sp. RS175

For carbon source Glycerol across organisms