Experiment set4S628 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES; no stress control

200 most important genes:

  gene name fitness t score description  
OKGIIK_15735 23S_rrna -4.6 -3.2 23S ribosomal RNA compare
OKGIIK_05210 -4.0 -2.7 HigA family addiction module antitoxin compare
OKGIIK_16330 folK -3.9 -3.8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_11115 fiu -3.9 -3.7 Outer membrane receptor for monomeric catechols compare
OKGIIK_11110 ompR -3.6 -7.3 DNA-binding response regulator compare
OKGIIK_16565 mgtA -3.5 -5.3 magnesium-translocating P-type ATPase compare
OKGIIK_05840 rimP -3.5 -2.4 ribosome maturation protein RimP compare
OKGIIK_01155 cpsB -3.5 -5.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_15520 pgi -3.3 -4.5 glucose-6-phosphate isomerase compare
OKGIIK_00795 ycgM -3.2 -7.5 2-keto-4-pentenoate hydratase compare
OKGIIK_16805 purH -3.2 -2.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_09995 yajC -3.2 -3.1 preprotein translocase subunit YajC compare
OKGIIK_00755 pdhA -3.2 -5.3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_03000 degQ -3.2 -8.7 peptidase S1 compare
OKGIIK_09550 rplS -3.2 -2.2 50S ribosomal protein L19 compare
OKGIIK_11330 lolD -3.2 -2.2 ABC transporter ATP-binding protein compare
OKGIIK_11105 baeS -3.2 -2.2 sensor histidine kinase compare
OKGIIK_02315 purM -3.1 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_15125 fbp -3.1 -12.1 class 1 fructose-bisphosphatase compare
OKGIIK_06470 typA -3.0 -4.1 translational GTPase TypA compare
OKGIIK_07870 rnc -3.0 -2.9 ribonuclease III compare
OKGIIK_01845 kup -3.0 -2.9 potassium uptake protein compare
OKGIIK_03600 cspC -3.0 -2.5 cold-shock protein compare
OKGIIK_01165 rfbC -3.0 -5.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_12705 pta -2.9 -4.0 NADP-dependent malic enzyme compare
OKGIIK_07300 -2.9 -2.0 carbamoyl phosphate synthase small subunit compare
OKGIIK_16060 gpmA -2.7 -5.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_07295 carB -2.7 -4.1 carbamoyl-phosphate synthase large subunit compare
OKGIIK_07900 rpoE -2.7 -7.1 RNA polymerase sigma factor RpoE compare
OKGIIK_01195 -2.7 -5.1 ABC transporter, ATP-binding protein compare
OKGIIK_12765 mtnN -2.6 -11.7 AMP nucleosidase compare
OKGIIK_11075 gshB -2.6 -6.5 glutathione synthase compare
OKGIIK_03560 abcC -2.6 -5.2 methionine ABC transporter ATP-binding protein compare
OKGIIK_12965 -2.6 -6.7 glutamate--cysteine ligase compare
OKGIIK_10080 ihfA -2.6 -1.8 integration host factor subunit alpha compare
OKGIIK_11845 -2.6 -14.7 Histidine kinase compare
OKGIIK_12590 lpdA -2.5 -5.6 dihydrolipoyl dehydrogenase compare
OKGIIK_01190 -2.5 -3.8 Transport permease protein compare
OKGIIK_07040 smc -2.5 -4.1 chromosome segregation protein SMC compare
OKGIIK_01240 -2.5 -6.0 EamA domain-containing protein compare
OKGIIK_09230 -2.5 -4.4 RecBCD enzyme subunit RecB compare
OKGIIK_04805 aroC -2.5 -5.9 chorismate synthase compare
OKGIIK_02255 hprK -2.5 -10.3 HPr(Ser) kinase/phosphatase compare
OKGIIK_06755 rnr -2.5 -12.7 ribonuclease R compare
OKGIIK_10175 rseP -2.4 -2.8 RIP metalloprotease RseP compare
OKGIIK_13745 -2.4 -16.4 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_11415 ldcA -2.4 -5.3 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_11445 ettA -2.4 -5.4 energy-dependent translational throttle protein EttA compare
OKGIIK_00995 -2.4 -4.0 DUF2946 domain-containing protein compare
OKGIIK_00990 -2.4 -3.6 TonB-dependent copper receptor compare
OKGIIK_02260 raiA -2.4 -11.3 ribosomal subunit interface protein compare
OKGIIK_01160 rfbD -2.4 -6.1 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_06585 ompA -2.4 -9.9 flagellar motor protein MotB compare
OKGIIK_03070 marC -2.3 -7.5 YhgN family NAAT transporter compare
OKGIIK_01110 pgk -2.3 -6.4 phosphoglycerate kinase compare
OKGIIK_01780 -2.3 -2.2 NAD+ synthase compare
OKGIIK_11505 purL -2.2 -4.2 phosphoribosylformylglycinamidine synthase compare
OKGIIK_15045 -2.2 -3.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_13570 thrC -2.2 -2.9 threonine synthase compare
OKGIIK_00160 -2.2 -3.2 hypothetical protein compare
OKGIIK_00745 aceF -2.2 -4.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_01060 gap -2.1 -7.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_05570 purF -2.1 -5.6 amidophosphoribosyltransferase compare
OKGIIK_13750 purD -2.1 -5.0 phosphoribosylamine--glycine ligase compare
OKGIIK_03430 -2.1 -6.9 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_05955 tauE -2.0 -10.8 sulfite exporter TauE/SafE family protein compare
OKGIIK_02180 wcaG -2.0 -2.6 Nucleoside-diphosphate-sugar epimerase compare
OKGIIK_11965 mscL -2.0 -1.9 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_07400 -2.0 -1.3 4a-hydroxytetrahydrobiopterin dehydratase compare
OKGIIK_06870 hflD -1.9 -6.9 high frequency lysogenization protein HflD compare
OKGIIK_01175 rfbB -1.9 -9.8 dTDP-glucose 4,6-dehydratase compare
OKGIIK_05950 roxA -1.9 -3.8 transcription factor compare
OKGIIK_01220 -1.9 -12.5 Phosphomannomutase compare
OKGIIK_12700 aceE -1.9 -12.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_16560 -1.9 -7.3 hypothetical protein compare
OKGIIK_09225 -1.9 -4.7 RecBCD enzyme subunit RecC compare
OKGIIK_07245 -1.9 -6.5 Glycosyl transferase family 4 compare
OKGIIK_01080 fba1 -1.9 -10.6 fructose-bisphosphate aldolase class I compare
OKGIIK_01210 gmd -1.8 -11.4 GDP-mannose 4,6-dehydratase compare
OKGIIK_04705 dcd -1.8 -9.7 dCTP deaminase compare
OKGIIK_04915 -1.8 -4.8 Ferric uptake regulation protein compare
OKGIIK_05630 elaC -1.8 -4.6 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_08010 -1.8 -9.1 Peptidylprolyl isomerase compare
OKGIIK_07250 lapB -1.7 -8.9 lipopolysaccharide assembly protein LapB compare
OKGIIK_11390 pgpA -1.7 -5.3 Phosphatidylglycerophosphatase A compare
OKGIIK_02245 manX -1.7 -8.3 PTS fructose IIA subunit family protein compare
OKGIIK_03555 metP -1.7 -6.7 metal ABC transporter permease compare
OKGIIK_03305 minD -1.7 -2.0 septum site-determining protein MinD compare
OKGIIK_11065 ompR -1.7 -3.7 two-component system response regulator compare
OKGIIK_09875 glpG -1.6 -11.0 DUF1751 domain-containing protein compare
OKGIIK_12440 djlA -1.6 -4.9 co-chaperone DjlA compare
OKGIIK_06555 ahpC -1.6 -4.9 alkyl hydroperoxide reductase subunit C compare
OKGIIK_02250 rapZ -1.6 -8.5 RNase adapter RapZ compare
OKGIIK_15390 xth -1.5 -6.5 exodeoxyribonuclease III compare
OKGIIK_00110 ctpA -1.5 -5.4 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_10125 glnD -1.5 -2.9 [protein-PII] uridylyltransferase compare
OKGIIK_02360 pitA -1.5 -3.7 inorganic phosphate transporter compare
OKGIIK_03645 htpX -1.5 -4.2 protease HtpX compare
OKGIIK_08775 -1.5 -3.2 hypothetical protein compare
OKGIIK_14345 nagA -1.5 -6.7 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_13440 -1.4 -8.8 type I restriction-modification system subunit M compare
OKGIIK_15525 tal -1.4 -5.1 transaldolase compare
OKGIIK_03550 nlpA -1.4 -6.3 methionine ABC transporter substrate-binding protein compare
OKGIIK_06640 hflK -1.4 -7.4 FtsH protease activity modulator HflK compare
OKGIIK_06920 aroA -1.4 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_09020 adhE -1.4 -4.1 aldehyde dehydrogenase family protein compare
OKGIIK_06580 prpD -1.4 -5.3 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_09380 -1.4 -6.7 FUSC-like domain-containing protein compare
OKGIIK_11235 pssA -1.4 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_01170 rfbA -1.4 -7.0 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_12595 aceF -1.4 -3.8 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_01215 -1.3 -7.5 GDP-mannose 4,6 dehydratase compare
OKGIIK_11005 suhB -1.3 -4.0 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_14900 -1.3 -2.0 Membrane bound FAD containing D-sorbitol dehydrogenase compare
OKGIIK_05560 -1.3 -2.1 Sporulation protein compare
OKGIIK_11030 -1.3 -8.9 P63C domain-containing protein compare
OKGIIK_01280 -1.3 -6.9 Glyco-trans-2-like domain-containing protein compare
OKGIIK_03335 -1.3 -9.5 Polyketide cyclase compare
OKGIIK_01235 -1.3 -9.1 Glycosyl transferases group 1 compare
OKGIIK_01790 rluD -1.3 -3.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_01075 -1.3 -9.2 Energy transducer TonB compare
OKGIIK_05125 -1.2 -4.8 Mechanosensitive ion channel protein MscS compare
OKGIIK_07855 -1.2 -2.0 Histidine kinase compare
OKGIIK_11495 -1.2 -5.4 Glycosyl transferase family 2 compare
OKGIIK_00275 -1.2 -2.8 Antitoxin compare
OKGIIK_12205 -1.2 -1.9 hypothetical protein compare
OKGIIK_01095 tkt -1.2 -5.6 transketolase compare
OKGIIK_07255 -1.2 -3.0 LapA-dom domain-containing protein compare
OKGIIK_09515 gph -1.2 -4.3 phosphoglycolate phosphatase compare
OKGIIK_07240 flaA1 -1.2 -7.3 polysaccharide biosynthesis protein compare
OKGIIK_07375 smpB -1.2 -1.7 SsrA-binding protein SmpB compare
OKGIIK_13530 -1.2 -3.3 2-epi-5-epi-valiolone synthase compare
OKGIIK_12625 -1.1 -1.3 DUF2383 domain-containing protein compare
OKGIIK_11370 -1.1 -3.3 Hemin transporter compare
OKGIIK_02875 -1.1 -2.4 Flg-hook domain-containing protein compare
OKGIIK_06645 hflC -1.1 -5.4 protease modulator HflC compare
OKGIIK_01560 -1.1 -1.7 HTH cro/C1-type domain-containing protein compare
OKGIIK_13855 -1.1 -1.6 Lipid A biosynthesis acyltransferase compare
OKGIIK_01265 -1.1 -7.5 Glycosyltransferase WbsX compare
OKGIIK_11870 rimK -1.1 -4.4 30S ribosomal protein S6--L-glutamate ligase compare
OKGIIK_02320 -1.1 -6.2 DUF2066 domain-containing protein compare
OKGIIK_00095 ybeD -1.1 -1.8 DUF493 domain-containing protein compare
OKGIIK_03310 minC -1.0 -1.4 septum site-determining protein MinC compare
OKGIIK_06650 -1.0 -1.5 DUF2065 domain-containing protein compare
OKGIIK_01200 -1.0 -6.1 FkbM family methyltransferase compare
OKGIIK_02070 -1.0 -2.3 hypothetical protein compare
OKGIIK_00365 -1.0 -2.2 hypothetical protein compare
OKGIIK_12065 -1.0 -8.0 Penicillin-binding protein 1A compare
OKGIIK_01185 -1.0 -7.4 Glycosyl transferase compare
OKGIIK_03320 -1.0 -3.0 GNAT family N-acetyltransferase compare
OKGIIK_07395 -1.0 -1.3 NfuA family Fe-S biogenesis protein compare
OKGIIK_16785 polA -1.0 -6.4 DNA polymerase I compare
OKGIIK_07125 -1.0 -3.2 Ancillary SecYEG translocon subunit compare
OKGIIK_12130 mlaE -1.0 -3.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_13840 tagB -1.0 -6.2 CDP-glycerol glycerophosphotransferase compare
OKGIIK_11255 yjjB -1.0 -3.2 Putative threonine/serine exporter compare
OKGIIK_08705 -1.0 -1.2 hypothetical protein compare
OKGIIK_13560 thrA -1.0 -4.1 homoserine dehydrogenase compare
OKGIIK_16480 -0.9 -1.5 Phosphocholine transferase AnkX compare
OKGIIK_13030 rpmG -0.9 -3.9 50S ribosomal protein L33 compare
OKGIIK_03870 Glu_trna -0.9 -2.2 tRNA-Glu compare
OKGIIK_15695 -0.9 -5.0 MFS transporter compare
OKGIIK_06965 -0.9 -3.9 conjugal transfer protein TraB compare
OKGIIK_08920 -0.9 -1.5 hypothetical protein compare
OKGIIK_01140 aF2118 -0.9 -6.9 cystathionine beta-synthase compare
OKGIIK_12075 -0.9 -2.4 citrate synthase compare
OKGIIK_13565 thrB -0.9 -2.5 homoserine kinase compare
OKGIIK_05615 -0.9 -2.7 DUF6165 domain-containing protein compare
OKGIIK_07885 -0.9 -4.7 Elongation factor 4 compare
OKGIIK_12120 -0.9 -5.3 Toluene tolerance protein compare
OKGIIK_11600 -0.9 -1.8 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_10960 -0.9 -0.9 ABC transporter compare
OKGIIK_11520 xerD -0.9 -2.8 site-specific tyrosine recombinase XerD compare
OKGIIK_06275 -0.8 -1.8 Transcriptional regulator compare
OKGIIK_01180 metC -0.8 -5.4 cystathionine beta-lyase compare
OKGIIK_14655 merT -0.8 -2.2 mercuric ion transporter MerT compare
OKGIIK_01390 -0.8 -4.8 Transcriptional regulator compare
OKGIIK_09925 nirD -0.8 -4.9 benzene 1,2-dioxygenase compare
OKGIIK_02965 phoH -0.8 -4.8 Phosphate starvation-inducible protein PhoH, putative ATPase compare
OKGIIK_07140 rlmN -0.8 -1.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
OKGIIK_04120 -0.8 -1.5 DNA-binding protein compare
OKGIIK_11085 algH -0.8 -1.4 YqgE/AlgH family protein compare
OKGIIK_09975 -0.8 -4.3 Aminoglycoside phosphotransferase compare
OKGIIK_04955 hisC -0.8 -4.9 histidinol-phosphate transaminase compare
OKGIIK_09705 -0.8 -5.8 ATP-dependent RNA helicase compare
OKGIIK_08500 -0.8 -1.3 Cell wall hydrolase compare
OKGIIK_04945 hisG -0.8 -1.1 ATP phosphoribosyltransferase compare
OKGIIK_08110 pcm -0.8 -1.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
OKGIIK_15445 rsmG -0.8 -4.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
OKGIIK_07430 secG -0.8 -2.9 preprotein translocase subunit SecG compare
OKGIIK_15705 -0.8 -2.9 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_10760 -0.8 -5.1 hypothetical protein compare
OKGIIK_14850 -0.8 -2.4 3-beta hydroxysteroid dehydrogenase compare
OKGIIK_05875 -0.8 -4.0 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_07755 yIH1 -0.8 -1.3 Thymidylate synthase compare
OKGIIK_11595 -0.8 -5.5 Membrane protein compare
OKGIIK_04080 -0.8 -2.4 DUF2442 domain-containing protein compare
OKGIIK_08115 surE -0.8 -3.0 5'/3'-nucleotidase SurE compare
OKGIIK_10775 -0.8 -3.5 hypothetical protein compare
OKGIIK_04035 -0.7 -1.5 DeoR/GlpR family DNA-binding transcription regulator compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in no stress control experiments