Experiment set4S619 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_HOMOPIPES; pH5

200 most important genes:

  gene name fitness t score description  
OKGIIK_15735 23S_rrna -4.2 -2.9 23S ribosomal RNA compare
OKGIIK_11370 -4.0 -2.7 Hemin transporter compare
OKGIIK_11115 fiu -3.6 -3.5 Outer membrane receptor for monomeric catechols compare
OKGIIK_11110 ompR -3.5 -6.7 DNA-binding response regulator compare
OKGIIK_13745 -3.4 -10.8 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_00755 pdhA -3.3 -3.9 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_16440 -3.2 -5.7 Cytochrome C compare
OKGIIK_08010 -3.2 -6.5 Peptidylprolyl isomerase compare
OKGIIK_01155 cpsB -3.2 -3.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_01075 -3.1 -12.2 Energy transducer TonB compare
OKGIIK_07725 -3.1 -14.7 Glycosyltransferase compare
OKGIIK_04915 -3.1 -3.0 Ferric uptake regulation protein compare
OKGIIK_06470 typA -3.0 -3.5 translational GTPase TypA compare
OKGIIK_07395 -2.9 -2.0 NfuA family Fe-S biogenesis protein compare
OKGIIK_06990 -2.9 -2.5 Phosphoglycerate mutase compare
OKGIIK_15520 pgi -2.9 -5.2 glucose-6-phosphate isomerase compare
OKGIIK_00160 -2.9 -2.9 hypothetical protein compare
OKGIIK_10175 rseP -2.9 -2.0 RIP metalloprotease RseP compare
OKGIIK_11330 lolD -2.8 -1.9 ABC transporter ATP-binding protein compare
OKGIIK_06365 yhcF -2.8 -5.0 GntR family transcriptional regulator compare
OKGIIK_16805 purH -2.8 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_03000 degQ -2.8 -8.6 peptidase S1 compare
OKGIIK_07900 rpoE -2.7 -6.6 RNA polymerase sigma factor RpoE compare
OKGIIK_13750 purD -2.7 -4.5 phosphoribosylamine--glycine ligase compare
OKGIIK_09510 -2.7 -7.8 phytoene synthase compare
OKGIIK_09995 yajC -2.7 -3.2 preprotein translocase subunit YajC compare
OKGIIK_06870 hflD -2.7 -6.6 high frequency lysogenization protein HflD compare
OKGIIK_01240 -2.7 -4.4 EamA domain-containing protein compare
OKGIIK_11415 ldcA -2.6 -4.0 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_11075 gshB -2.6 -5.3 glutathione synthase compare
OKGIIK_03065 yqjQ -2.6 -5.3 Short-chain dehydrogenase compare
OKGIIK_03070 marC -2.6 -6.9 YhgN family NAAT transporter compare
OKGIIK_00745 aceF -2.6 -3.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_01165 rfbC -2.6 -4.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_03430 -2.6 -6.1 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_03335 -2.5 -12.6 Polyketide cyclase compare
OKGIIK_01060 gap -2.5 -7.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_10740 -2.5 -12.7 Prepilin-type N-terminal cleavage/methylation domain-containing protein compare
OKGIIK_11105 baeS -2.5 -3.4 sensor histidine kinase compare
OKGIIK_07290 greA -2.5 -6.7 transcription elongation factor GreA compare
OKGIIK_15125 fbp -2.5 -11.6 class 1 fructose-bisphosphatase compare
OKGIIK_11065 ompR -2.5 -2.9 two-component system response regulator compare
OKGIIK_11505 purL -2.5 -1.7 phosphoribosylformylglycinamidine synthase compare
OKGIIK_09515 gph -2.5 -4.7 phosphoglycolate phosphatase compare
OKGIIK_09500 dksA -2.4 -4.0 RNA polymerase-binding protein DksA compare
OKGIIK_13570 thrC -2.4 -3.6 threonine synthase compare
OKGIIK_09230 -2.4 -3.6 RecBCD enzyme subunit RecB compare
OKGIIK_02590 -2.4 -8.8 hypothetical protein compare
OKGIIK_06755 rnr -2.4 -11.7 ribonuclease R compare
OKGIIK_07250 lapB -2.4 -9.0 lipopolysaccharide assembly protein LapB compare
OKGIIK_14345 nagA -2.4 -6.7 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_12965 -2.4 -6.0 glutamate--cysteine ligase compare
OKGIIK_07255 -2.3 -4.6 LapA-dom domain-containing protein compare
OKGIIK_03405 -2.3 -9.6 DUF2007 domain-containing protein compare
OKGIIK_07285 lysR -2.3 -11.8 LysR family transcriptional regulator compare
OKGIIK_06630 hfq -2.3 -6.1 RNA chaperone Hfq compare
OKGIIK_00110 ctpA -2.3 -5.3 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_06585 ompA -2.3 -8.7 flagellar motor protein MotB compare
OKGIIK_00795 ycgM -2.3 -7.7 2-keto-4-pentenoate hydratase compare
OKGIIK_02315 purM -2.3 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_11740 -2.3 -11.1 LppC putative lipoprotein compare
OKGIIK_01080 fba1 -2.3 -10.4 fructose-bisphosphate aldolase class I compare
OKGIIK_15595 -2.2 -15.8 Phospholipase D family protein compare
OKGIIK_07855 -2.2 -2.5 Histidine kinase compare
OKGIIK_01110 pgk -2.2 -5.5 phosphoglycerate kinase compare
OKGIIK_16565 mgtA -2.2 -6.4 magnesium-translocating P-type ATPase compare
OKGIIK_00825 -2.2 -11.2 Cytochrome B compare
OKGIIK_13625 ubiA -2.2 -1.3 4-hydroxybenzoate octaprenyltransferase compare
OKGIIK_01845 kup -2.2 -3.9 potassium uptake protein compare
OKGIIK_09380 -2.2 -7.4 FUSC-like domain-containing protein compare
OKGIIK_11100 -2.1 -9.3 hypothetical protein compare
OKGIIK_02260 raiA -2.1 -10.3 ribosomal subunit interface protein compare
OKGIIK_05210 -2.1 -2.8 HigA family addiction module antitoxin compare
OKGIIK_05630 elaC -2.1 -4.6 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_11235 pssA -2.1 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_06640 hflK -2.1 -8.4 FtsH protease activity modulator HflK compare
OKGIIK_03040 -2.0 -2.8 hypothetical protein compare
OKGIIK_05570 purF -2.0 -5.3 amidophosphoribosyltransferase compare
OKGIIK_01780 -2.0 -1.4 NAD+ synthase compare
OKGIIK_09190 -2.0 -10.2 Methionine synthase compare
OKGIIK_04805 aroC -2.0 -5.5 chorismate synthase compare
OKGIIK_01175 rfbB -2.0 -9.2 dTDP-glucose 4,6-dehydratase compare
OKGIIK_07245 -2.0 -6.0 Glycosyl transferase family 4 compare
OKGIIK_11365 -1.9 -9.2 hypothetical protein compare
OKGIIK_12705 pta -1.9 -4.0 NADP-dependent malic enzyme compare
OKGIIK_08095 -1.9 -11.6 hypothetical protein compare
OKGIIK_13020 secB -1.9 -2.6 protein-export chaperone SecB compare
OKGIIK_16060 gpmA -1.9 -4.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_11050 -1.9 -13.6 Histidine kinase compare
OKGIIK_00035 rbsK -1.9 -10.7 carbohydrate kinase family protein compare
OKGIIK_12075 -1.9 -4.4 citrate synthase compare
OKGIIK_01125 -1.9 -6.3 DUF4398 domain-containing protein compare
OKGIIK_01160 rfbD -1.9 -5.6 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_10895 -1.9 -6.9 Histidine kinase compare
OKGIIK_16845 -1.9 -1.1 Protein-disulfide reductase compare
OKGIIK_01830 tACO1 -1.9 -1.3 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_06460 lysR -1.9 -9.8 LysR family transcriptional regulator compare
OKGIIK_15695 -1.9 -7.8 MFS transporter compare
OKGIIK_09590 rplI -1.8 -3.9 50S ribosomal protein L9 compare
OKGIIK_16540 -1.8 -10.6 SURF1-like protein compare
OKGIIK_12745 -1.8 -11.6 Sulfotransferase compare
OKGIIK_12590 lpdA -1.8 -4.3 dihydrolipoyl dehydrogenase compare
OKGIIK_11600 -1.8 -2.3 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_07430 secG -1.7 -5.4 preprotein translocase subunit SecG compare
OKGIIK_09835 -1.7 -8.1 Paraquat-inducible protein A compare
OKGIIK_11735 rsmI -1.7 -5.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
OKGIIK_11335 -1.7 -5.8 efflux transporter periplasmic adaptor subunit compare
OKGIIK_06920 aroA -1.7 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_09185 metH1 -1.7 -7.2 5-methyltetrahydrofolate--homocysteine methyltransferase compare
OKGIIK_13440 -1.7 -9.7 type I restriction-modification system subunit M compare
OKGIIK_02320 -1.7 -8.6 DUF2066 domain-containing protein compare
OKGIIK_07125 -1.7 -4.2 Ancillary SecYEG translocon subunit compare
OKGIIK_05125 -1.6 -5.5 Mechanosensitive ion channel protein MscS compare
OKGIIK_15525 tal -1.6 -4.6 transaldolase compare
OKGIIK_01235 -1.6 -10.9 Glycosyl transferases group 1 compare
OKGIIK_06425 -1.6 -4.4 Pseudouridine synthase compare
OKGIIK_06580 prpD -1.6 -5.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_16095 -1.6 -4.5 Cytochrome C compare
OKGIIK_06645 hflC -1.6 -6.8 protease modulator HflC compare
OKGIIK_16840 -1.6 -7.3 Redoxin compare
OKGIIK_14155 -1.6 -6.1 Secretion protein HlyD compare
OKGIIK_02560 yggX -1.6 -5.7 oxidative damage protection protein compare
OKGIIK_16950 tolC -1.6 -11.0 Outer membrane protein TolC compare
OKGIIK_03560 abcC -1.6 -3.7 methionine ABC transporter ATP-binding protein compare
OKGIIK_01170 rfbA -1.6 -7.7 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_12065 -1.5 -11.2 Penicillin-binding protein 1A compare
OKGIIK_15245 -1.5 -14.1 hypothetical protein compare
OKGIIK_10270 -1.5 -2.3 DUF615 domain-containing protein compare
OKGIIK_16550 ctaA -1.5 -10.4 heme A synthase compare
OKGIIK_07390 -1.5 -8.2 Cytochrome C compare
OKGIIK_05885 mtnA -1.5 -5.3 S-methyl-5-thioribose-1-phosphate isomerase compare
OKGIIK_02070 -1.5 -2.5 hypothetical protein compare
OKGIIK_09550 rplS -1.5 -1.5 50S ribosomal protein L19 compare
OKGIIK_10640 -1.5 -4.3 DUF2069 domain-containing protein compare
OKGIIK_03795 -1.5 -10.8 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_03305 minD -1.5 -2.1 septum site-determining protein MinD compare
OKGIIK_16515 coxB -1.5 -10.5 cytochrome c oxidase subunit II compare
OKGIIK_14450 -1.5 -3.7 DUF488 domain-containing protein compare
OKGIIK_16520 ctaD -1.4 -12.6 cytochrome c oxidase subunit I compare
OKGIIK_07040 smc -1.4 -2.4 chromosome segregation protein SMC compare
OKGIIK_14575 yciW -1.4 -3.2 carboxymuconolactone decarboxylase compare
OKGIIK_10080 ihfA -1.4 -1.6 integration host factor subunit alpha compare
OKGIIK_06860 rnt -1.4 -3.8 ribonuclease T compare
OKGIIK_06885 clpS -1.4 -3.7 ATP-dependent Clp protease adapter ClpS compare
OKGIIK_06565 prpB -1.4 -4.9 methylisocitrate lyase compare
OKGIIK_09975 -1.4 -7.1 Aminoglycoside phosphotransferase compare
OKGIIK_04705 dcd -1.3 -7.6 dCTP deaminase compare
OKGIIK_00995 -1.3 -2.4 DUF2946 domain-containing protein compare
OKGIIK_16530 cyoC -1.3 -9.2 cytochrome c oxidase subunit 3 compare
OKGIIK_14325 btuB -1.3 -11.2 TonB-dependent vitamin B12 receptor compare
OKGIIK_02115 ttdA -1.3 -4.6 fumarate hydratase compare
OKGIIK_09875 glpG -1.3 -9.0 DUF1751 domain-containing protein compare
OKGIIK_01320 -1.3 -2.9 Protein TonB compare
OKGIIK_16345 -1.3 -1.9 hypothetical protein compare
OKGIIK_09825 -1.3 -8.3 Mammalian cell entry protein compare
OKGIIK_14940 -1.3 -4.4 undecaprenyl-diphosphate phosphatase compare
OKGIIK_03550 nlpA -1.3 -5.8 methionine ABC transporter substrate-binding protein compare
OKGIIK_13335 ubiK -1.3 -2.2 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_10625 -1.2 -6.7 Thioredoxin domain-containing protein compare
OKGIIK_09225 -1.2 -3.1 RecBCD enzyme subunit RecC compare
OKGIIK_01750 purR -1.2 -5.5 LacI family transcriptional regulator compare
OKGIIK_12595 aceF -1.2 -3.5 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_03555 metP -1.2 -5.2 metal ABC transporter permease compare
OKGIIK_09830 pqiA -1.2 -8.3 paraquat-inducible membrane protein A compare
OKGIIK_09310 -1.2 -3.1 DUF6587 domain-containing protein compare
OKGIIK_11625 rsmA -1.2 -8.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OKGIIK_16535 -1.2 -4.7 DUF2909 domain-containing protein compare
OKGIIK_01270 -1.2 -3.3 Transcriptional regulator compare
OKGIIK_02360 pitA -1.2 -3.1 inorganic phosphate transporter compare
OKGIIK_16545 -1.2 -4.4 hypothetical protein compare
OKGIIK_00105 lipA -1.2 -4.9 lipoyl synthase compare
OKGIIK_15705 -1.2 -4.6 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_02120 lysA -1.2 -7.0 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_09160 gdh2 -1.1 -9.1 NAD-specific glutamate dehydrogenase compare
OKGIIK_07295 carB -1.1 -3.9 carbamoyl-phosphate synthase large subunit compare
OKGIIK_09820 -1.1 -8.5 ABC-trans-aux domain-containing protein compare
OKGIIK_10260 pmbA -1.1 -6.9 metalloprotease PmbA compare
OKGIIK_15310 -1.1 -7.3 hypothetical protein compare
OKGIIK_04325 ubiM -1.1 -7.9 5-demethoxyubiquinol-8 5-hydroxylase UbiM compare
OKGIIK_12700 aceE -1.1 -8.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_01130 -1.1 -4.5 DUF4398 domain-containing protein compare
OKGIIK_11595 -1.1 -7.3 Membrane protein compare
OKGIIK_03875 pcnB -1.1 -4.9 tRNA nucleotidyltransferase/poly(A) polymerase compare
OKGIIK_09925 nirD -1.1 -5.4 benzene 1,2-dioxygenase compare
OKGIIK_02875 -1.1 -2.3 Flg-hook domain-containing protein compare
OKGIIK_01260 fixA -1.1 -1.3 EtfB protein compare
OKGIIK_02255 hprK -1.1 -5.8 HPr(Ser) kinase/phosphatase compare
OKGIIK_03030 -1.1 -2.1 DUF3301 domain-containing protein compare
OKGIIK_01210 gmd -1.1 -7.1 GDP-mannose 4,6-dehydratase compare
OKGIIK_10280 tldD -1.1 -8.8 metalloprotease TldD compare
OKGIIK_12920 ctpA -1.1 -7.4 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_09670 -1.1 -5.2 Peptidyl-prolyl cis-trans isomerase compare
OKGIIK_10805 abrB -1.1 -1.2 AbrB family transcriptional regulator compare
OKGIIK_02580 rsmD -1.1 -5.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
OKGIIK_10600 -1.0 -6.3 Beta-barrel assembly-enhancing protease compare
OKGIIK_07885 -1.0 -5.4 Elongation factor 4 compare
OKGIIK_16555 cyoE -1.0 -6.6 heme o synthase compare
OKGIIK_11190 -1.0 -2.8 WGR domain-containing protein compare
OKGIIK_01185 -1.0 -7.2 Glycosyl transferase compare
OKGIIK_09850 -1.0 -6.0 DUF502 domain-containing protein compare


Specific Phenotypes

For 16 genes in this experiment