Experiment set4S618 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_MES; pH5

200 most important genes:

  gene name fitness t score description  
OKGIIK_15735 23S_rrna -4.1 -2.8 23S ribosomal RNA compare
OKGIIK_11115 fiu -4.0 -2.8 Outer membrane receptor for monomeric catechols compare
OKGIIK_05210 -3.7 -2.5 HigA family addiction module antitoxin compare
OKGIIK_11110 ompR -3.6 -4.3 DNA-binding response regulator compare
OKGIIK_13750 purD -3.6 -2.5 phosphoribosylamine--glycine ligase compare
OKGIIK_10805 abrB -3.5 -2.1 AbrB family transcriptional regulator compare
OKGIIK_01075 -3.5 -7.0 Energy transducer TonB compare
OKGIIK_04915 -3.4 -2.3 Ferric uptake regulation protein compare
OKGIIK_00745 aceF -3.4 -2.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_01830 tACO1 -3.3 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_13020 secB -3.2 -2.2 protein-export chaperone SecB compare
OKGIIK_07725 -3.2 -13.9 Glycosyltransferase compare
OKGIIK_13745 -3.1 -13.2 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_09510 -3.1 -7.2 phytoene synthase compare
OKGIIK_15520 pgi -3.1 -2.2 glucose-6-phosphate isomerase compare
OKGIIK_05570 purF -3.1 -3.0 amidophosphoribosyltransferase compare
OKGIIK_01060 gap -3.0 -4.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_00755 pdhA -3.0 -4.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_10740 -3.0 -11.1 Prepilin-type N-terminal cleavage/methylation domain-containing protein compare
OKGIIK_12965 -3.0 -4.5 glutamate--cysteine ligase compare
OKGIIK_07285 lysR -2.9 -7.8 LysR family transcriptional regulator compare
OKGIIK_02315 purM -2.9 -2.0 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_01240 -2.9 -2.8 EamA domain-containing protein compare
OKGIIK_11075 gshB -2.9 -3.9 glutathione synthase compare
OKGIIK_07395 -2.9 -1.9 NfuA family Fe-S biogenesis protein compare
OKGIIK_11415 ldcA -2.9 -2.0 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_13570 thrC -2.9 -2.8 threonine synthase compare
OKGIIK_10175 rseP -2.8 -1.9 RIP metalloprotease RseP compare
OKGIIK_07040 smc -2.8 -3.3 chromosome segregation protein SMC compare
OKGIIK_03065 yqjQ -2.8 -4.7 Short-chain dehydrogenase compare
OKGIIK_11330 lolD -2.8 -1.9 ABC transporter ATP-binding protein compare
OKGIIK_03040 -2.7 -3.2 hypothetical protein compare
OKGIIK_03335 -2.7 -12.2 Polyketide cyclase compare
OKGIIK_01845 kup -2.7 -2.6 potassium uptake protein compare
OKGIIK_16440 -2.7 -6.4 Cytochrome C compare
OKGIIK_00110 ctpA -2.7 -4.0 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_07900 rpoE -2.7 -6.4 RNA polymerase sigma factor RpoE compare
OKGIIK_11740 -2.6 -11.0 LppC putative lipoprotein compare
OKGIIK_07870 rnc -2.6 -3.1 ribonuclease III compare
OKGIIK_12705 pta -2.6 -3.5 NADP-dependent malic enzyme compare
OKGIIK_07430 secG -2.6 -4.9 preprotein translocase subunit SecG compare
OKGIIK_15125 fbp -2.6 -11.3 class 1 fructose-bisphosphatase compare
OKGIIK_11065 ompR -2.6 -2.5 two-component system response regulator compare
OKGIIK_08095 -2.6 -11.5 hypothetical protein compare
OKGIIK_01110 pgk -2.5 -5.1 phosphoglycerate kinase compare
OKGIIK_03430 -2.5 -5.5 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_03000 degQ -2.5 -9.0 peptidase S1 compare
OKGIIK_14345 nagA -2.5 -6.6 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_02180 wcaG -2.5 -2.4 Nucleoside-diphosphate-sugar epimerase compare
OKGIIK_00795 ycgM -2.5 -7.3 2-keto-4-pentenoate hydratase compare
OKGIIK_02260 raiA -2.4 -10.2 ribosomal subunit interface protein compare
OKGIIK_16540 -2.4 -11.3 SURF1-like protein compare
OKGIIK_03070 marC -2.4 -7.5 YhgN family NAAT transporter compare
OKGIIK_01155 cpsB -2.4 -5.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_07290 greA -2.4 -6.2 transcription elongation factor GreA compare
OKGIIK_06585 ompA -2.4 -8.0 flagellar motor protein MotB compare
OKGIIK_03555 metP -2.4 -6.5 metal ABC transporter permease compare
OKGIIK_06470 typA -2.3 -3.5 translational GTPase TypA compare
OKGIIK_03405 -2.3 -9.6 DUF2007 domain-containing protein compare
OKGIIK_06990 -2.3 -1.9 Phosphoglycerate mutase compare
OKGIIK_00825 -2.3 -10.5 Cytochrome B compare
OKGIIK_06755 rnr -2.3 -11.1 ribonuclease R compare
OKGIIK_06920 aroA -2.3 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_16805 purH -2.3 -2.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_01165 rfbC -2.3 -5.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_09230 -2.3 -3.2 RecBCD enzyme subunit RecB compare
OKGIIK_14040 mnhC -2.2 -1.1 Na+/H+ antiporter subunit C compare
OKGIIK_09225 -2.2 -5.0 RecBCD enzyme subunit RecC compare
OKGIIK_08010 -2.2 -9.4 Peptidylprolyl isomerase compare
OKGIIK_03550 nlpA -2.2 -7.3 methionine ABC transporter substrate-binding protein compare
OKGIIK_11050 -2.2 -14.3 Histidine kinase compare
OKGIIK_09500 dksA -2.1 -3.5 RNA polymerase-binding protein DksA compare
OKGIIK_06870 hflD -2.1 -6.6 high frequency lysogenization protein HflD compare
OKGIIK_01080 fba1 -2.1 -10.3 fructose-bisphosphate aldolase class I compare
OKGIIK_10640 -2.1 -4.5 DUF2069 domain-containing protein compare
OKGIIK_03560 abcC -2.1 -4.4 methionine ABC transporter ATP-binding protein compare
OKGIIK_11505 purL -2.1 -3.2 phosphoribosylformylglycinamidine synthase compare
OKGIIK_16060 gpmA -2.1 -4.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_09995 yajC -2.1 -3.1 preprotein translocase subunit YajC compare
OKGIIK_09190 -2.1 -10.2 Methionine synthase compare
OKGIIK_09835 -2.1 -8.4 Paraquat-inducible protein A compare
OKGIIK_12745 -2.0 -12.3 Sulfotransferase compare
OKGIIK_01780 -2.0 -1.4 NAD+ synthase compare
OKGIIK_09515 gph -2.0 -5.2 phosphoglycolate phosphatase compare
OKGIIK_01235 -2.0 -11.8 Glycosyl transferases group 1 compare
OKGIIK_02590 -2.0 -7.2 hypothetical protein compare
OKGIIK_11370 -2.0 -3.4 Hemin transporter compare
OKGIIK_06460 lysR -2.0 -9.6 LysR family transcriptional regulator compare
OKGIIK_00160 -2.0 -2.6 hypothetical protein compare
OKGIIK_11100 -2.0 -9.1 hypothetical protein compare
OKGIIK_11105 baeS -2.0 -4.3 sensor histidine kinase compare
OKGIIK_02560 yggX -2.0 -5.6 oxidative damage protection protein compare
OKGIIK_09380 -2.0 -7.2 FUSC-like domain-containing protein compare
OKGIIK_01320 -1.9 -3.4 Protein TonB compare
OKGIIK_02360 pitA -1.9 -4.0 inorganic phosphate transporter compare
OKGIIK_16565 mgtA -1.9 -5.9 magnesium-translocating P-type ATPase compare
OKGIIK_16555 cyoE -1.9 -10.9 heme o synthase compare
OKGIIK_12075 -1.9 -4.4 citrate synthase compare
OKGIIK_09185 metH1 -1.9 -7.1 5-methyltetrahydrofolate--homocysteine methyltransferase compare
OKGIIK_05630 elaC -1.9 -4.3 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_16840 -1.9 -7.4 Redoxin compare
OKGIIK_09550 rplS -1.9 -1.9 50S ribosomal protein L19 compare
OKGIIK_15595 -1.8 -13.7 Phospholipase D family protein compare
OKGIIK_16515 coxB -1.8 -12.4 cytochrome c oxidase subunit II compare
OKGIIK_09825 -1.8 -10.7 Mammalian cell entry protein compare
OKGIIK_15695 -1.8 -7.3 MFS transporter compare
OKGIIK_16950 tolC -1.8 -11.8 Outer membrane protein TolC compare
OKGIIK_15310 -1.8 -10.3 hypothetical protein compare
OKGIIK_16560 -1.8 -6.6 hypothetical protein compare
OKGIIK_06630 hfq -1.8 -5.7 RNA chaperone Hfq compare
OKGIIK_00270 -1.8 -4.2 Transcriptional regulator compare
OKGIIK_12065 -1.8 -12.3 Penicillin-binding protein 1A compare
OKGIIK_04705 dcd -1.8 -8.7 dCTP deaminase compare
OKGIIK_06365 yhcF -1.7 -3.5 GntR family transcriptional regulator compare
OKGIIK_16095 -1.7 -4.6 Cytochrome C compare
OKGIIK_13335 ubiK -1.7 -2.2 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_15525 tal -1.7 -3.9 transaldolase compare
OKGIIK_16550 ctaA -1.7 -10.8 heme A synthase compare
OKGIIK_16520 ctaD -1.7 -14.5 cytochrome c oxidase subunit I compare
OKGIIK_06645 hflC -1.7 -7.0 protease modulator HflC compare
OKGIIK_05125 -1.7 -5.4 Mechanosensitive ion channel protein MscS compare
OKGIIK_11365 -1.7 -8.7 hypothetical protein compare
OKGIIK_11845 -1.7 -10.2 Histidine kinase compare
OKGIIK_07250 lapB -1.7 -9.0 lipopolysaccharide assembly protein LapB compare
OKGIIK_09830 pqiA -1.7 -10.7 paraquat-inducible membrane protein A compare
OKGIIK_14450 -1.7 -4.0 DUF488 domain-containing protein compare
OKGIIK_08705 -1.6 -1.9 hypothetical protein compare
OKGIIK_15245 -1.6 -14.6 hypothetical protein compare
OKGIIK_03775 ppx -1.6 -7.1 exopolyphosphatase compare
OKGIIK_10895 -1.6 -5.3 Histidine kinase compare
OKGIIK_11255 yjjB -1.6 -3.9 Putative threonine/serine exporter compare
OKGIIK_06565 prpB -1.6 -5.4 methylisocitrate lyase compare
OKGIIK_07295 carB -1.6 -4.5 carbamoyl-phosphate synthase large subunit compare
OKGIIK_16530 cyoC -1.6 -11.0 cytochrome c oxidase subunit 3 compare
OKGIIK_12920 ctpA -1.5 -9.8 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_03875 pcnB -1.5 -6.0 tRNA nucleotidyltransferase/poly(A) polymerase compare
OKGIIK_02320 -1.5 -7.7 DUF2066 domain-containing protein compare
OKGIIK_14025 mnhF -1.5 -2.3 K+/H+ antiporter subunit F compare
OKGIIK_04940 yerC -1.5 -2.4 TrpR , YerC/YecD compare
OKGIIK_02255 hprK -1.5 -7.8 HPr(Ser) kinase/phosphatase compare
OKGIIK_07390 -1.5 -8.2 Cytochrome C compare
OKGIIK_07300 -1.5 -2.4 carbamoyl phosphate synthase small subunit compare
OKGIIK_02860 -1.5 -3.3 Chemotaxis protein CheW compare
OKGIIK_06640 hflK -1.5 -6.1 FtsH protease activity modulator HflK compare
OKGIIK_09590 rplI -1.5 -3.5 50S ribosomal protein L9 compare
OKGIIK_01070 pyk -1.4 -6.0 pyruvate kinase compare
OKGIIK_12590 lpdA -1.4 -4.0 dihydrolipoyl dehydrogenase compare
OKGIIK_01125 -1.4 -5.2 DUF4398 domain-containing protein compare
OKGIIK_13440 -1.4 -8.1 type I restriction-modification system subunit M compare
OKGIIK_08880 -1.4 -1.7 hypothetical protein compare
OKGIIK_10080 ihfA -1.4 -1.6 integration host factor subunit alpha compare
OKGIIK_03295 -1.4 -2.3 hypothetical protein compare
OKGIIK_16785 polA -1.4 -8.3 DNA polymerase I compare
OKGIIK_09820 -1.4 -9.3 ABC-trans-aux domain-containing protein compare
OKGIIK_16545 -1.4 -4.6 hypothetical protein compare
OKGIIK_12820 sYLF -1.4 -4.9 Las17-binding protein actin regulator compare
OKGIIK_07385 -1.4 -7.8 cytochrome C compare
OKGIIK_04805 aroC -1.4 -4.9 chorismate synthase compare
OKGIIK_13565 thrB -1.4 -3.3 homoserine kinase compare
OKGIIK_00995 -1.4 -2.2 DUF2946 domain-containing protein compare
OKGIIK_12650 -1.4 -2.9 glycine zipper 2TM domain-containing protein compare
OKGIIK_00990 -1.4 -2.4 TonB-dependent copper receptor compare
OKGIIK_01160 rfbD -1.4 -4.2 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_00105 lipA -1.4 -5.9 lipoyl synthase compare
OKGIIK_06425 -1.3 -3.1 Pseudouridine synthase compare
OKGIIK_12595 aceF -1.3 -3.5 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_10600 -1.3 -7.6 Beta-barrel assembly-enhancing protease compare
OKGIIK_11595 -1.3 -8.4 Membrane protein compare
OKGIIK_08935 -1.3 -2.9 hypothetical protein compare
OKGIIK_12700 aceE -1.3 -9.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_01750 purR -1.3 -5.5 LacI family transcriptional regulator compare
OKGIIK_06580 prpD -1.3 -5.2 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_13360 copY -1.3 -2.5 methicillin resistance protein compare
OKGIIK_02060 -1.3 -3.6 hypothetical protein compare
OKGIIK_10905 iaaA -1.3 -7.6 isoaspartyl peptidase/L-asparaginase compare
OKGIIK_02120 lysA -1.3 -7.1 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
OKGIIK_06650 -1.3 -1.9 DUF2065 domain-containing protein compare
OKGIIK_15650 ftsN -1.3 -2.8 sporulation protein compare
OKGIIK_01995 lysR -1.3 -2.2 DNA-binding transcriptional regulator OxyR compare
OKGIIK_11625 rsmA -1.3 -8.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OKGIIK_03795 -1.3 -9.1 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_06890 clpA -1.3 -8.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OKGIIK_12225 -1.2 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
OKGIIK_13625 ubiA -1.2 -0.8 4-hydroxybenzoate octaprenyltransferase compare
OKGIIK_10260 pmbA -1.2 -7.3 metalloprotease PmbA compare
OKGIIK_03865 -1.2 -1.6 ferredoxin compare
OKGIIK_11235 pssA -1.2 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_05950 roxA -1.2 -2.1 transcription factor compare
OKGIIK_09850 -1.2 -6.7 DUF502 domain-containing protein compare
OKGIIK_03305 minD -1.2 -1.5 septum site-determining protein MinD compare
OKGIIK_03675 -1.2 -6.6 Aminoglycoside phosphotransferase compare
OKGIIK_15390 xth -1.2 -5.0 exodeoxyribonuclease III compare
OKGIIK_02580 rsmD -1.2 -5.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
OKGIIK_08855 -1.2 -2.0 hypothetical protein compare
OKGIIK_14930 glnK -1.2 -2.1 transcriptional regulator compare
OKGIIK_11070 pilG -1.2 -4.6 twitching motility response regulator PilG compare
OKGIIK_09160 gdh2 -1.2 -8.9 NAD-specific glutamate dehydrogenase compare
OKGIIK_00095 ybeD -1.2 -1.7 DUF493 domain-containing protein compare
OKGIIK_09875 glpG -1.2 -8.2 DUF1751 domain-containing protein compare
OKGIIK_09925 nirD -1.2 -6.1 benzene 1,2-dioxygenase compare


Specific Phenotypes

For 19 genes in this experiment