Experiment set4S585 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Cadmium chloride 32 uM

200 most important genes:

  gene name fitness t score description  
OKGIIK_15735 23S_rrna -4.5 -3.1 23S ribosomal RNA compare
OKGIIK_07680 -3.7 -2.6 ATPase P compare
OKGIIK_13745 -3.6 -10.2 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_12440 djlA -3.3 -4.5 co-chaperone DjlA compare
OKGIIK_13570 thrC -3.3 -2.2 threonine synthase compare
OKGIIK_01075 -3.2 -11.5 Energy transducer TonB compare
OKGIIK_06470 typA -3.2 -3.1 translational GTPase TypA compare
OKGIIK_15520 pgi -3.1 -5.6 glucose-6-phosphate isomerase compare
OKGIIK_01155 cpsB -3.1 -3.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_16845 -3.1 -2.7 Protein-disulfide reductase compare
OKGIIK_05840 rimP -3.0 -2.1 ribosome maturation protein RimP compare
OKGIIK_11110 ompR -3.0 -7.6 DNA-binding response regulator compare
OKGIIK_00755 pdhA -3.0 -4.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_05570 purF -3.0 -3.0 amidophosphoribosyltransferase compare
OKGIIK_03000 degQ -3.0 -6.2 peptidase S1 compare
OKGIIK_06270 cusA -3.0 -7.0 CusA/CzcA family heavy metal efflux RND transporter compare
OKGIIK_05630 elaC -3.0 -2.9 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_16565 mgtA -3.0 -6.3 magnesium-translocating P-type ATPase compare
OKGIIK_11115 fiu -2.9 -4.0 Outer membrane receptor for monomeric catechols compare
OKGIIK_01845 kup -2.9 -2.0 potassium uptake protein compare
OKGIIK_11415 ldcA -2.9 -2.0 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_02315 purM -2.9 -2.0 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_06260 -2.9 -7.4 TolC family protein compare
OKGIIK_07040 smc -2.9 -2.8 chromosome segregation protein SMC compare
OKGIIK_01240 -2.9 -3.4 EamA domain-containing protein compare
OKGIIK_07870 rnc -2.8 -2.0 ribonuclease III compare
OKGIIK_03070 marC -2.8 -5.4 YhgN family NAAT transporter compare
OKGIIK_00825 -2.8 -9.6 Cytochrome B compare
OKGIIK_11075 gshB -2.8 -4.3 glutathione synthase compare
OKGIIK_13750 purD -2.8 -4.6 phosphoribosylamine--glycine ligase compare
OKGIIK_07900 rpoE -2.8 -4.6 RNA polymerase sigma factor RpoE compare
OKGIIK_09550 rplS -2.8 -1.9 50S ribosomal protein L19 compare
OKGIIK_10175 rseP -2.8 -1.9 RIP metalloprotease RseP compare
OKGIIK_11740 -2.8 -11.0 LppC putative lipoprotein compare
OKGIIK_01165 rfbC -2.8 -4.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_06265 -2.7 -7.3 Efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_12965 -2.7 -5.7 glutamate--cysteine ligase compare
OKGIIK_16560 -2.7 -7.7 hypothetical protein compare
OKGIIK_07375 smpB -2.7 -1.8 SsrA-binding protein SmpB compare
OKGIIK_01190 -2.6 -2.6 Transport permease protein compare
OKGIIK_11105 baeS -2.6 -2.6 sensor histidine kinase compare
OKGIIK_09995 yajC -2.6 -2.5 preprotein translocase subunit YajC compare
OKGIIK_11370 -2.6 -3.5 Hemin transporter compare
OKGIIK_01110 pgk -2.5 -5.0 phosphoglycerate kinase compare
OKGIIK_06585 ompA -2.5 -7.0 flagellar motor protein MotB compare
OKGIIK_00110 ctpA -2.5 -5.0 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_04705 dcd -2.5 -7.9 dCTP deaminase compare
OKGIIK_01235 -2.5 -12.3 Glycosyl transferases group 1 compare
OKGIIK_11845 -2.4 -12.8 Histidine kinase compare
OKGIIK_06755 rnr -2.4 -8.5 ribonuclease R compare
OKGIIK_05210 -2.4 -2.8 HigA family addiction module antitoxin compare
OKGIIK_11505 purL -2.4 -2.3 phosphoribosylformylglycinamidine synthase compare
OKGIIK_13020 secB -2.4 -2.7 protein-export chaperone SecB compare
OKGIIK_11330 lolD -2.4 -2.2 ABC transporter ATP-binding protein compare
OKGIIK_11600 -2.3 -1.6 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_08775 -2.3 -3.1 hypothetical protein compare
OKGIIK_03430 -2.3 -6.2 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_01195 -2.3 -4.6 ABC transporter, ATP-binding protein compare
OKGIIK_12065 -2.3 -13.2 Penicillin-binding protein 1A compare
OKGIIK_01060 gap -2.3 -6.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_16060 gpmA -2.2 -5.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_09190 -2.2 -9.0 Methionine synthase compare
OKGIIK_10080 ihfA -2.2 -1.5 integration host factor subunit alpha compare
OKGIIK_15245 -2.2 -19.6 hypothetical protein compare
OKGIIK_12705 pta -2.2 -3.9 NADP-dependent malic enzyme compare
OKGIIK_15125 fbp -2.2 -12.3 class 1 fructose-bisphosphatase compare
OKGIIK_09230 -2.2 -3.2 RecBCD enzyme subunit RecB compare
OKGIIK_07395 -2.1 -2.0 NfuA family Fe-S biogenesis protein compare
OKGIIK_02255 hprK -2.1 -7.7 HPr(Ser) kinase/phosphatase compare
OKGIIK_16620 ccmA -2.1 -7.0 ABC transporter compare
OKGIIK_03405 -2.1 -8.6 DUF2007 domain-containing protein compare
OKGIIK_10805 abrB -2.1 -1.7 AbrB family transcriptional regulator compare
OKGIIK_03335 -2.1 -12.1 Polyketide cyclase compare
OKGIIK_03645 htpX -2.1 -4.5 protease HtpX compare
OKGIIK_12885 -2.1 -2.9 hypothetical protein compare
OKGIIK_02260 raiA -2.0 -10.1 ribosomal subunit interface protein compare
OKGIIK_07300 -2.0 -2.0 carbamoyl phosphate synthase small subunit compare
OKGIIK_14345 nagA -2.0 -7.9 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_16805 purH -2.0 -2.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_03065 yqjQ -2.0 -5.4 Short-chain dehydrogenase compare
OKGIIK_01160 rfbD -2.0 -5.5 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_05950 roxA -2.0 -3.2 transcription factor compare
OKGIIK_09185 metH1 -1.9 -6.1 5-methyltetrahydrofolate--homocysteine methyltransferase compare
OKGIIK_04805 aroC -1.9 -5.0 chorismate synthase compare
OKGIIK_11445 ettA -1.9 -4.7 energy-dependent translational throttle protein EttA compare
OKGIIK_09875 glpG -1.9 -10.6 DUF1751 domain-containing protein compare
OKGIIK_06920 aroA -1.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_07295 carB -1.9 -4.4 carbamoyl-phosphate synthase large subunit compare
OKGIIK_02180 wcaG -1.9 -2.3 Nucleoside-diphosphate-sugar epimerase compare
OKGIIK_04570 -1.9 -2.4 hypothetical protein compare
OKGIIK_01780 -1.8 -2.5 NAD+ synthase compare
OKGIIK_06630 hfq -1.8 -5.4 RNA chaperone Hfq compare
OKGIIK_01210 gmd -1.8 -10.5 GDP-mannose 4,6-dehydratase compare
OKGIIK_02320 -1.8 -8.2 DUF2066 domain-containing protein compare
OKGIIK_09515 gph -1.8 -4.8 phosphoglycolate phosphatase compare
OKGIIK_16440 -1.8 -5.8 Cytochrome C compare
OKGIIK_03560 abcC -1.8 -3.1 methionine ABC transporter ATP-binding protein compare
OKGIIK_05125 -1.8 -4.9 Mechanosensitive ion channel protein MscS compare
OKGIIK_07660 ccoO -1.8 -3.6 cytochrome-c oxidase, cbb3-type subunit II compare
OKGIIK_02360 pitA -1.7 -3.6 inorganic phosphate transporter compare
OKGIIK_10125 glnD -1.7 -2.6 [protein-PII] uridylyltransferase compare
OKGIIK_13440 -1.7 -9.2 type I restriction-modification system subunit M compare
OKGIIK_13855 -1.7 -2.6 Lipid A biosynthesis acyltransferase compare
OKGIIK_09410 lolD -1.7 -1.9 ABC-type lipoprotein export system, ATPase component compare
OKGIIK_11065 ompR -1.7 -3.1 two-component system response regulator compare
OKGIIK_14900 -1.6 -2.4 Membrane bound FAD containing D-sorbitol dehydrogenase compare
OKGIIK_13680 -1.6 -3.2 Cell surface protein compare
OKGIIK_06650 -1.6 -2.2 DUF2065 domain-containing protein compare
OKGIIK_03310 minC -1.6 -1.5 septum site-determining protein MinC compare
OKGIIK_03865 -1.6 -1.5 ferredoxin compare
OKGIIK_11250 hns -1.6 -3.3 histidine biosynthesis protein compare
OKGIIK_15650 ftsN -1.6 -3.3 sporulation protein compare
OKGIIK_08010 -1.6 -7.4 Peptidylprolyl isomerase compare
OKGIIK_11365 -1.6 -8.2 hypothetical protein compare
OKGIIK_07290 greA -1.6 -4.9 transcription elongation factor GreA compare
OKGIIK_15045 -1.6 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_08920 -1.6 -2.3 hypothetical protein compare
OKGIIK_07670 ccoP -1.6 -4.2 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_06425 -1.6 -4.0 Pseudouridine synthase compare
OKGIIK_01995 lysR -1.6 -1.9 DNA-binding transcriptional regulator OxyR compare
OKGIIK_13350 yhbQ -1.5 -3.0 GIY-YIG nuclease compare
OKGIIK_06965 -1.5 -5.7 conjugal transfer protein TraB compare
OKGIIK_16330 folK -1.5 -2.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_07285 lysR -1.5 -8.4 LysR family transcriptional regulator compare
OKGIIK_02590 -1.5 -5.8 hypothetical protein compare
OKGIIK_00745 aceF -1.5 -1.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_03875 pcnB -1.5 -5.2 tRNA nucleotidyltransferase/poly(A) polymerase compare
OKGIIK_01830 tACO1 -1.5 -2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_00995 -1.5 -3.0 DUF2946 domain-containing protein compare
OKGIIK_03895 panD -1.5 -4.0 aspartate 1-decarboxylase compare
OKGIIK_13335 ubiK -1.5 -2.2 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_03690 -1.5 -1.6 RNA-binding protein compare
OKGIIK_12765 mtnN -1.5 -8.7 AMP nucleosidase compare
OKGIIK_11625 rsmA -1.5 -9.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OKGIIK_11595 -1.5 -8.7 Membrane protein compare
OKGIIK_06640 hflK -1.5 -6.5 FtsH protease activity modulator HflK compare
OKGIIK_10270 -1.5 -2.3 DUF615 domain-containing protein compare
OKGIIK_02580 rsmD -1.5 -6.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
OKGIIK_00795 ycgM -1.4 -6.3 2-keto-4-pentenoate hydratase compare
OKGIIK_16915 rfaB -1.4 -9.9 glycosyl transferase compare
OKGIIK_06990 -1.4 -1.4 Phosphoglycerate mutase compare
OKGIIK_02245 manX -1.4 -6.5 PTS fructose IIA subunit family protein compare
OKGIIK_15695 -1.4 -6.6 MFS transporter compare
OKGIIK_07430 secG -1.4 -4.1 preprotein translocase subunit SecG compare
OKGIIK_06555 ahpC -1.4 -3.7 alkyl hydroperoxide reductase subunit C compare
OKGIIK_12130 mlaE -1.4 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_11965 mscL -1.4 -1.6 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_12120 -1.4 -8.0 Toluene tolerance protein compare
OKGIIK_11235 pssA -1.4 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_09225 -1.4 -3.6 RecBCD enzyme subunit RecC compare
OKGIIK_09510 -1.4 -5.3 phytoene synthase compare
OKGIIK_01175 rfbB -1.3 -7.6 dTDP-glucose 4,6-dehydratase compare
OKGIIK_01080 fba1 -1.3 -8.0 fructose-bisphosphate aldolase class I compare
OKGIIK_07885 -1.3 -6.4 Elongation factor 4 compare
OKGIIK_01140 aF2118 -1.3 -10.0 cystathionine beta-synthase compare
OKGIIK_03130 -1.3 -3.9 Arsenate reductase compare
OKGIIK_14180 -1.3 -3.7 DNA-binding response regulator compare
OKGIIK_12820 sYLF -1.3 -4.8 Las17-binding protein actin regulator compare
OKGIIK_11495 -1.3 -4.9 Glycosyl transferase family 2 compare
OKGIIK_12110 -1.3 -10.2 ABC transporter compare
OKGIIK_10260 pmbA -1.3 -8.0 metalloprotease PmbA compare
OKGIIK_03520 glpG -1.3 -8.2 rhomboid family intramembrane serine protease compare
OKGIIK_16615 -1.3 -9.4 ABC transporter permease compare
OKGIIK_09020 adhE -1.3 -3.6 aldehyde dehydrogenase family protein compare
OKGIIK_09575 ypjD -1.3 -5.3 Cytochrome C assembly protein compare
OKGIIK_16680 natA -1.3 -4.6 ABC transporter compare
OKGIIK_09380 -1.3 -5.6 FUSC-like domain-containing protein compare
OKGIIK_04120 -1.3 -2.0 DNA-binding protein compare
OKGIIK_14090 argD -1.3 -8.5 aspartate aminotransferase family protein compare
OKGIIK_02250 rapZ -1.3 -6.1 RNase adapter RapZ compare
OKGIIK_13445 -1.3 -6.1 Restriction endonuclease subunit S compare
OKGIIK_14150 -1.3 -8.8 Alpha/beta hydrolase compare
OKGIIK_06645 hflC -1.3 -5.5 protease modulator HflC compare
OKGIIK_11390 pgpA -1.3 -3.9 Phosphatidylglycerophosphatase A compare
OKGIIK_07250 lapB -1.2 -6.7 lipopolysaccharide assembly protein LapB compare
OKGIIK_10280 tldD -1.2 -9.6 metalloprotease TldD compare
OKGIIK_01220 -1.2 -8.6 Phosphomannomutase compare
OKGIIK_14085 mtnX -1.2 -6.2 phosphatase compare
OKGIIK_11050 -1.2 -8.9 Histidine kinase compare
OKGIIK_09160 gdh2 -1.2 -9.1 NAD-specific glutamate dehydrogenase compare
OKGIIK_03890 panC -1.2 -2.7 pantoate--beta-alanine ligase compare
OKGIIK_06275 -1.2 -2.1 Transcriptional regulator compare
OKGIIK_03320 -1.2 -3.4 GNAT family N-acetyltransferase compare
OKGIIK_08705 -1.2 -1.9 hypothetical protein compare
OKGIIK_09925 nirD -1.2 -5.9 benzene 1,2-dioxygenase compare
OKGIIK_09690 srmB -1.2 -5.7 RNA helicase compare
OKGIIK_11870 rimK -1.2 -4.0 30S ribosomal protein S6--L-glutamate ligase compare
OKGIIK_12950 -1.2 -7.9 ATP-dependent RNA helicase RhlB compare
OKGIIK_11800 -1.2 -3.0 hypothetical protein compare
OKGIIK_06435 scpA -1.2 -3.2 Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family compare
OKGIIK_00990 -1.1 -2.4 TonB-dependent copper receptor compare
OKGIIK_01125 -1.1 -4.0 DUF4398 domain-containing protein compare
OKGIIK_07895 -1.1 -3.0 Anti-anti-sigma factor compare
OKGIIK_06870 hflD -1.1 -4.5 high frequency lysogenization protein HflD compare
OKGIIK_09590 rplI -1.1 -2.6 50S ribosomal protein L9 compare
OKGIIK_10895 -1.1 -5.0 Histidine kinase compare
OKGIIK_09705 -1.1 -7.7 ATP-dependent RNA helicase compare
OKGIIK_15310 -1.1 -7.7 hypothetical protein compare
OKGIIK_12735 grxD -1.1 -7.2 Grx4 family monothiol glutaredoxin compare
OKGIIK_14325 btuB -1.1 -9.5 TonB-dependent vitamin B12 receptor compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cadmium chloride in Rhodanobacter sp. FW510-T8

For stress Cadmium chloride across organisms