Experiment set4S5 for Pseudomonas sp. RS175

Compare to:

D-Glucose carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_02823 -5.3 -3.7 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_05015 -5.3 -25.6 Glutamate synthase [NADPH] large chain compare
PFR28_02824 -5.2 -8.0 3-isopropylmalate dehydratase large subunit compare
PFR28_02821 -5.2 -18.2 3-isopropylmalate dehydrogenase compare
PFR28_05016 -4.9 -16.8 Glutamate synthase [NADPH] small chain compare
PFR28_04278 -4.8 -7.4 Dihydroxy-acid dehydratase compare
PFR28_00186 -4.8 -8.0 ATP phosphoribosyltransferase compare
PFR28_04930 -4.6 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03697 -4.6 -11.8 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_03363 -4.6 -18.4 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_02810 -4.6 -18.6 O-succinylhomoserine sulfhydrylase compare
PFR28_01142 -4.5 -22.4 Transaldolase compare
PFR28_04246 -4.5 -14.3 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04933 -4.5 -5.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_03012 -4.4 -8.9 Phosphate acyltransferase compare
PFR28_04519 -4.3 -11.3 HTH-type transcriptional activator CmpR compare
PFR28_04245 -4.3 -17.2 Homoserine O-succinyltransferase compare
PFR28_04929 -4.2 -7.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_01366 -4.1 -10.2 Sulfite reductase [ferredoxin] compare
PFR28_00305 -4.1 -10.2 2-isopropylmalate synthase compare
PFR28_04986 -4.0 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04834 -4.0 -19.9 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04518 -3.9 -16.0 2-oxoglutarate carboxylase small subunit compare
PFR28_00573 -3.9 -15.5 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04517 -3.9 -17.3 Oxaloacetate decarboxylase alpha chain compare
PFR28_05105 -3.8 -7.3 Phosphoserine phosphatase SerB2 compare
PFR28_01365 -3.8 -7.2 hypothetical protein compare
PFR28_00098 -3.8 -11.9 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04932 -3.7 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02603 -3.7 -8.3 Siroheme synthase compare
PFR28_05125 -3.7 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00187 -3.7 -12.3 Histidinol dehydrogenase compare
PFR28_02811 -3.6 -2.5 Amidophosphoribosyltransferase compare
PFR28_03724 -3.5 -7.0 Glucose-6-phosphate isomerase compare
PFR28_04832 -3.5 -14.6 putative phosphatase compare
PFR28_00188 -3.4 -13.7 Histidinol-phosphate aminotransferase compare
PFR28_00560 -3.4 -13.6 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_04985 -3.2 -5.3 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_05244 -3.1 -14.6 Copper-exporting P-type ATPase compare
PFR28_03388 -3.1 -16.7 Quinolinate synthase A compare
PFR28_04202 -3.1 -3.7 5,10-methylenetetrahydrofolate reductase compare
PFR28_04628 -3.1 -2.9 Thiol:disulfide interchange protein DsbA compare
PFR28_03218 -3.0 -9.1 Phosphoribosylglycinamide formyltransferase compare
PFR28_00966 -3.0 -17.0 HTH-type transcriptional regulator CysB compare
PFR28_03860 -3.0 -6.1 putative murein peptide carboxypeptidase compare
PFR28_03698 -2.9 -8.1 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04425 -2.8 -10.9 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_04842 -2.8 -5.8 D-3-phosphoglycerate dehydrogenase compare
PFR28_04103 -2.7 -8.4 Biotin synthase compare
PFR28_04030 -2.7 -6.4 hypothetical protein compare
PFR28_04521 -2.5 -5.8 HTH-type transcriptional regulator HexR compare
PFR28_04100 -2.3 -7.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_00193 -2.3 -10.9 Sulfate adenylyltransferase subunit 2 compare
PFR28_04208 -2.3 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_00595 -2.3 -8.5 High-affinity gluconate transporter compare
PFR28_00594 -2.2 -5.1 Gluconokinase compare
PFR28_03217 -2.2 -1.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_03282 -2.2 -9.4 Arginine N-succinyltransferase subunit alpha compare
PFR28_03856 -2.2 -1.5 LPS-assembly lipoprotein LptE compare
PFR28_03699 -2.2 -2.1 Acetolactate synthase isozyme 3 large subunit compare
PFR28_00689 -2.2 -15.7 L-aspartate oxidase compare
PFR28_04071 -2.1 -2.0 Multifunctional CCA protein compare
PFR28_02838 -2.1 -13.1 Aromatic-amino-acid aminotransferase compare
PFR28_04308 -2.1 -1.4 Amino-acid acetyltransferase compare
PFR28_03455 -2.1 -6.2 Pyruvate kinase II compare
PFR28_00695 -2.1 -2.5 Sulfur carrier protein TusA compare
PFR28_04102 -2.0 -8.3 8-amino-7-oxononanoate synthase compare
PFR28_00561 -2.0 -1.4 Phosphogluconate dehydratase compare
PFR28_05201 -2.0 -4.5 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_00194 -2.0 -10.3 Bifunctional enzyme CysN/CysC compare
PFR28_03463 -1.9 -2.1 hypothetical protein compare
PFR28_01113 -1.8 -3.9 DNA topoisomerase 1 compare
PFR28_03223 -1.8 -8.8 GTP pyrophosphokinase compare
PFR28_04565 -1.8 -11.4 Protein RarD compare
PFR28_05005 -1.8 -9.1 NADP-dependent malic enzyme compare
PFR28_04252 -1.7 -8.2 Thiazole synthase compare
PFR28_05139 -1.6 -2.1 hypothetical protein compare
PFR28_02484 -1.6 -4.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_01156 -1.6 -5.7 hypothetical protein compare
PFR28_04436 -1.6 -6.2 hypothetical protein compare
PFR28_02009 -1.6 -2.0 HTH-type transcriptional regulator PgrR compare
PFR28_03714 -1.5 -9.6 RNA polymerase-binding transcription factor DksA compare
PFR28_02846 -1.5 -5.7 Adaptive-response sensory-kinase SasA compare
PFR28_03202 -1.5 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_05091 -1.5 -11.4 Phosphomethylpyrimidine synthase compare
PFR28_03844 -1.5 -5.6 Thiamine-phosphate synthase compare
PFR28_05204 -1.4 -2.9 Sulfite reductase [ferredoxin] compare
PFR28_03843 -1.3 -5.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_03209 -1.3 -3.4 Corrinoid adenosyltransferase compare
PFR28_01378 -1.3 -3.5 Magnesium-chelatase 38 kDa subunit compare
PFR28_03721 -1.3 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_03420 -1.3 -3.4 hypothetical protein compare
PFR28_01084 -1.3 -2.1 hypothetical protein compare
PFR28_03427 -1.2 -5.8 Sensor histidine kinase RcsC compare
PFR28_01081 -1.2 -2.1 hypothetical protein compare
PFR28_00562 -1.2 -8.3 Glucokinase compare
PFR28_04944 -1.2 -4.5 DNA-binding transcriptional regulator NtrC compare
PFR28_03281 -1.2 -5.4 Arginine N-succinyltransferase subunit beta compare
PFR28_01313 -1.2 -2.0 hypothetical protein compare
PFR28_01930 -1.2 -2.6 HTH-type transcriptional regulator McbR compare
PFR28_05199 -1.2 -3.8 Precorrin-6A reductase compare
PFR28_00856 -1.2 -6.6 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_04564 -1.2 -8.9 Aspartate-semialdehyde dehydrogenase compare
PFR28_03266 -1.2 -2.9 hypothetical protein compare
PFR28_04040 -1.2 -2.2 Protein YhfA compare
PFR28_05207 -1.2 -6.3 Siroheme synthase compare
PFR28_00837 -1.2 -5.8 hypothetical protein compare
PFR28_04064 -1.2 -3.2 Ribosomal RNA small subunit methyltransferase A compare
PFR28_04435 -1.2 -5.2 ATP-dependent DNA helicase RecG compare
PFR28_04782 -1.1 -8.0 hypothetical protein compare
PFR28_01231 -1.1 -2.4 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_00861 -1.1 -8.8 Chemotaxis protein CheW compare
PFR28_01118 -1.1 -1.4 hypothetical protein compare
PFR28_02969 -1.1 -2.9 hypothetical protein compare
PFR28_03255 -1.1 -8.4 Chemotaxis protein methyltransferase Cher2 compare
PFR28_03206 -1.1 -6.0 Cobalamin biosynthesis protein CobD compare
PFR28_03208 -1.0 -6.5 Cobyrinate a,c-diamide synthase compare
PFR28_00810 -1.0 -8.6 hypothetical protein compare
PFR28_04945 -1.0 -3.9 Sensory histidine kinase/phosphatase NtrB compare
PFR28_01230 -1.0 -2.3 Lon protease compare
PFR28_00405 -1.0 -1.5 hypothetical protein compare
PFR28_00850 -1.0 -6.4 Signal recognition particle 54 kDa protein compare
PFR28_00826 -1.0 -5.5 Flagellar secretion chaperone FliS compare
PFR28_00855 -1.0 -5.7 hypothetical protein compare
PFR28_00044 -1.0 -2.7 hypothetical protein compare
PFR28_03203 -1.0 -4.2 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_01377 -1.0 -6.3 Aerobic cobaltochelatase subunit CobN compare
PFR28_01182 -1.0 -1.3 hypothetical protein compare
PFR28_00277 -1.0 -1.6 Queuine tRNA-ribosyltransferase compare
PFR28_02812 -1.0 -3.2 hypothetical protein compare
PFR28_03413 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00356 -1.0 -4.6 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_00241 -1.0 -2.6 Disulfide bond formation protein B compare
PFR28_00823 -1.0 -7.3 Flagellin compare
PFR28_03130 -0.9 -1.8 Streptothricin hydrolase compare
PFR28_04072 -0.9 -2.3 Bifunctional folate synthesis protein compare
PFR28_03412 -0.9 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04418 -0.9 -2.1 Exodeoxyribonuclease compare
PFR28_03653 -0.9 -3.1 Molybdopterin-synthase adenylyltransferase compare
PFR28_02704 -0.9 -1.2 hypothetical protein compare
PFR28_03387 -0.9 -1.3 hypothetical protein compare
PFR28_03865 -0.9 -4.7 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_03657 -0.9 -3.5 Beta-barrel assembly-enhancing protease compare
PFR28_03200 -0.9 -3.0 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_04344 -0.9 -2.9 Exopolyphosphatase compare
PFR28_05071 -0.9 -1.6 D-inositol-3-phosphate glycosyltransferase compare
PFR28_05196 -0.9 -1.6 hypothetical protein compare
PFR28_01042 -0.9 -1.4 hypothetical protein compare
PFR28_00853 -0.9 -4.9 Chemotaxis protein CheY compare
PFR28_00448 -0.9 -2.2 hypothetical protein compare
PFR28_05206 -0.9 -5.7 Precorrin-2 C(20)-methyltransferase compare
PFR28_01312 -0.8 -1.6 HTH-type transcriptional regulator NorG compare
PFR28_03205 -0.8 -3.7 Histidinol-phosphate aminotransferase compare
PFR28_02201 -0.8 -2.0 Chaperone SurA compare
PFR28_04345 -0.8 -7.2 Polyphosphate kinase compare
PFR28_04566 -0.8 -6.3 4-chloro-allylglycine synthase compare
PFR28_04380 -0.8 -1.5 Transcriptional regulator SutA compare
PFR28_04936 -0.8 -2.3 Carboxy-terminal processing protease CtpB compare
PFR28_00825 -0.8 -6.7 B-type flagellar hook-associated protein 2 compare
PFR28_04184 -0.8 -3.3 hypothetical protein compare
PFR28_01369 -0.8 -5.1 Methionine synthase compare
PFR28_00809 -0.8 -7.0 hypothetical protein compare
PFR28_05191 -0.8 -2.5 hypothetical protein compare
PFR28_01855 -0.8 -1.0 Hypoxic response protein 1 compare
PFR28_00451 -0.8 -1.5 hypothetical protein compare
PFR28_01939 -0.8 -2.4 Phosphonoacetaldehyde hydrolase compare
PFR28_02941 -0.8 -1.5 hypothetical protein compare
PFR28_05000 -0.7 -1.5 Cell division protein FtsN compare
PFR28_03429 -0.7 -3.8 Thiamine-phosphate synthase compare
PFR28_05216 -0.7 -3.9 tRNA-dihydrouridine synthase B compare
PFR28_04491 -0.7 -2.5 putative acyl-CoA thioester hydrolase compare
PFR28_00988 -0.7 -4.7 Sensor histidine kinase RcsC compare
PFR28_05067 -0.7 -1.6 hypothetical protein compare
PFR28_00839 -0.7 -3.0 hypothetical protein compare
PFR28_03204 -0.7 -4.1 Cobyric acid synthase compare
PFR28_03369 -0.7 -4.1 Glycerol-3-phosphate regulon repressor compare
PFR28_00690 -0.7 -2.7 RNA polymerase sigma-H factor compare
PFR28_03680 -0.7 -1.2 hypothetical protein compare
PFR28_03169 -0.7 -4.1 Tail-specific protease compare
PFR28_01078 -0.7 -2.5 Adenine phosphoribosyltransferase compare
PFR28_04958 -0.7 -1.2 hypothetical protein compare
PFR28_01470 -0.7 -1.8 Transcriptional regulatory protein WalR compare
PFR28_02608 -0.7 -1.0 DNA translocase FtsK compare
PFR28_01181 -0.7 -3.4 hypothetical protein compare
PFR28_02449 -0.7 -4.9 putative branched-chain-amino-acid aminotransferase compare
PFR28_00480 -0.7 -2.5 HTH-type transcriptional activator CmpR compare
PFR28_04567 -0.7 -5.3 hypothetical protein compare
PFR28_01114 -0.7 -3.7 hypothetical protein compare
PFR28_02210 -0.7 -1.5 cAMP-activated global transcriptional regulator CRP compare
PFR28_03749 -0.7 -1.5 Outer membrane protein assembly factor BamD compare
PFR28_03423 -0.7 -3.2 Porin D compare
PFR28_01527 -0.7 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_02094 -0.7 -0.9 Glycerol-3-phosphate regulon repressor compare
PFR28_00808 -0.7 -4.5 hypothetical protein compare
PFR28_04325 -0.7 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_03178 -0.7 -1.7 tRNA-Asp compare
PFR28_00847 -0.7 -3.6 Flagellar biosynthetic protein FliR compare
PFR28_00873 -0.7 -3.0 hypothetical protein compare
PFR28_00842 -0.7 -5.7 Flagellar motor switch protein FliM compare
PFR28_00832 -0.7 -5.2 Flagellar M-ring protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. RS175 in carbon source experiments

For carbon source D-Glucose across organisms