Experiment set4S480 for Escherichia coli ECRC101

Compare to:

Control_ECRC101

200 most detrimental genes:

  gene name fitness t score description  
MCAODC_15510 yubL +2.6 1.6 UPF0401 protein YubL compare
MCAODC_17535 +1.8 2.3 stability determinant compare
MCAODC_19980 +1.8 1.9 PerC family transcriptional regulator compare
MCAODC_14235 rcsB +1.6 6.5 transcriptional regulator RcsB compare
MCAODC_11020 rpoS +1.6 11.5 RNA polymerase sigma factor RpoS compare
MCAODC_19995 +1.5 3.7 hypothetical protein compare
MCAODC_06810 gadE +1.4 7.1 acid resistance transcriptional activator GadE compare
MCAODC_14750 +1.4 3.2 Putative bacteriophage protein compare
MCAODC_16475 pptA +1.3 2.6 tautomerase PptA compare
MCAODC_23565 +1.3 2.0 putative transposase of insertion sequence IS682 compare
MCAODC_24995 Ser_trna +1.3 1.8 tRNA-Ser(gga) compare
MCAODC_14285 +1.2 1.2 hypothetical protein compare
MCAODC_17610 ynfA +1.2 2.4 YnfA family protein compare
MCAODC_13180 cIII +1.2 1.2 Protease inhibitor III compare
MCAODC_22520 rri1 +1.1 1.6 phage tail protein compare
MCAODC_16805 yneG +1.1 2.8 Uncharacterized protein YneG compare
MCAODC_18255 ydiT +1.1 1.5 Ferredoxin-like protein YdiT compare
MCAODC_19775 yodC +1.1 2.7 Uncharacterized protein YodC compare
MCAODC_18565 ynjH +1.1 1.0 Uncharacterized protein YnjH compare
MCAODC_05995 +1.1 1.3 toxin compare
MCAODC_05650 tisB +1.1 1.5 Small toxic protein TisB compare
MCAODC_23940 pgaD +1.1 2.1 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
MCAODC_17700 mdtI +1.1 0.9 multidrug/spermidine efflux SMR transporter subunit MdtI compare
MCAODC_20395 yoeI +1.1 2.1 Uncharacterized protein YoeI compare
MCAODC_17185 +1.1 0.9 Rha family transcriptional regulator compare
MCAODC_06780 gadW +1.0 7.4 acid resistance transcriptional activator GadW compare
MCAODC_18590 ydjA +1.0 1.7 NAD(P)H nitroreductase compare
MCAODC_21705 narI +1.0 2.1 respiratory nitrate reductase subunit gamma compare
MCAODC_16370 ydcT +1.0 2.8 Uncharacterized ABC transporter ATP-binding protein YdcT compare
MCAODC_00205 crl +1.0 6.1 sigma factor-binding protein Crl compare
MCAODC_16705 ydeR +1.0 1.3 Uncharacterized fimbrial-like protein YdeR compare
MCAODC_23480 terD +1.0 1.4 tellurium resistance membrane protein TerD compare
MCAODC_00350 +1.0 1.2 Ankyrin repeat containing virulence factor compare
MCAODC_16585 sra +1.0 3.2 stationary-phase-induced ribosome-associated protein compare
MCAODC_12540 eutS +1.0 1.1 Bacterial microcompartment shell protein EutS compare
MCAODC_19580 sdiA +1.0 4.6 transcriptional regulator SdiA compare
MCAODC_17885 nth +1.0 1.7 endonuclease III compare
MCAODC_18135 sufE +1.0 1.1 cysteine desulfuration protein SufE compare
MCAODC_18450 chbB +0.9 1.5 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
MCAODC_05985 +0.9 1.2 Aec79 compare
MCAODC_05780 escE +0.9 1.4 chaperone for EscF compare
MCAODC_26635 cspE +0.9 3.3 transcription antiterminator/RNA stability regulator CspE compare
MCAODC_19675 fliE +0.9 2.9 flagellar hook-basal body complex protein FliE compare
MCAODC_21255 +0.9 1.0 IS4 family transposase compare
MCAODC_11800 16S_rrna +0.9 1.1 16S ribosomal RNA compare
MCAODC_18740 yeaO +0.9 1.6 Uncharacterized protein YeaO compare
MCAODC_15965 tyrR +0.9 2.2 transcriptional regulator TyrR compare
MCAODC_27965 frmR +0.9 1.4 formaldehyde-responsive transcriptional repressor FrmR compare
MCAODC_20445 hisA +0.9 1.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_15335 ehxC +0.9 1.4 enterohemolysin-activating lysine-acyltransferase EhxC compare
MCAODC_06525 yiaG +0.9 1.7 HTH-type transcriptional regulator compare
MCAODC_16590 bdm +0.9 1.1 biofilm-dependent modulation protein compare
MCAODC_20155 +0.9 1.2 DUF1482 domain-containing protein compare
MCAODC_14870 +0.9 1.9 replication protein P compare
MCAODC_05625 yidI +0.9 2.4 Inner membrane protein YidI compare
MCAODC_22355 phoP +0.9 3.4 two-component system response regulator PhoP compare
MCAODC_18220 ydiF +0.9 1.5 Acetate CoA-transferase YdiF compare
MCAODC_25565 moaE +0.9 1.2 molybdopterin synthase catalytic subunit MoaE compare
MCAODC_15160 tap +0.9 0.9 RepA leader peptide Tap compare
MCAODC_16790 yneE +0.9 1.6 UPF0187 protein YneE compare
MCAODC_07150 acpP +0.9 1.2 acyl carrier protein compare
MCAODC_16505 narI +0.8 1.9 respiratory nitrate reductase subunit gamma compare
MCAODC_26480 gltK +0.8 2.6 glutamate/aspartate ABC transporter permease GltK compare
MCAODC_20025 +0.8 3.1 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
MCAODC_26350 chiQ +0.8 2.3 Uncharacterized lipoprotein ChiQ compare
MCAODC_24150 etk +0.8 5.0 tyrosine-protein kinase compare
MCAODC_18760 yeaQ +0.8 0.7 UPF0410 protein YeaQ compare
MCAODC_13190 +0.8 1.0 Prophage protein compare
MCAODC_22295 emrE +0.8 1.3 multidrug efflux SMR transporter EmrE compare
MCAODC_19740 fliR +0.8 3.3 flagellar type III secretion system protein FliR compare
MCAODC_08130 Thr_trna +0.8 0.8 tRNA-Thr(ggt) compare
MCAODC_11420 csiR +0.8 1.3 DNA-binding transcriptional regulator CsiR compare
MCAODC_24005 rutB +0.8 2.7 peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
MCAODC_24360 +0.8 1.3 hypothetical protein compare
MCAODC_00035 +0.8 1.9 Antitermination protein Q compare
MCAODC_16785 tam +0.8 1.3 trans-aconitate 2-methyltransferase compare
MCAODC_21460 +0.8 2.6 DUF968 domain-containing protein compare
MCAODC_22360 phoQ +0.8 4.2 two-component system sensor histidine kinase PhoQ compare
MCAODC_23285 +0.8 2.0 restriction endonuclease compare
MCAODC_18575 ynjI +0.8 2.7 Inner membrane protein YnjI compare
MCAODC_22885 hinT +0.8 0.8 purine nucleoside phosphoramidase compare
MCAODC_16170 pdxI +0.8 0.8 pyridoxine 4-dehydrogenase compare
MCAODC_10560 ppdC +0.8 2.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
MCAODC_10325 sctT +0.8 1.1 type III secretion system export apparatus subunit SctT compare
MCAODC_23370 +0.8 1.2 Putative UvrD/REP helicase-like protein compare
MCAODC_07830 yheO +0.8 1.7 Uncharacterized protein YheO compare
MCAODC_20455 hisIE +0.8 1.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
MCAODC_24350 +0.8 1.7 hypothetical protein compare
MCAODC_24140 gfcE +0.7 4.1 Putative polysaccharide export protein GfcE compare
MCAODC_16525 narU +0.7 2.1 nitrate/nitrite transporter NarU compare
MCAODC_25500 espX2 +0.7 0.9 type III secretion system effector EspX2 compare
MCAODC_16630 dosP +0.7 1.1 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
MCAODC_15575 yciE +0.7 0.8 Protein YciE compare
MCAODC_22085 +0.7 1.9 phage tail protein compare
MCAODC_27135 hyi +0.7 1.5 hydroxypyruvate isomerase compare
MCAODC_16870 pspE +0.7 1.1 rhodanese compare
MCAODC_22685 +0.7 1.0 protein hokC compare
MCAODC_22105 +0.7 2.3 Tail tube protein compare
MCAODC_21240 yehS +0.7 1.6 Uncharacterized protein YehS compare
MCAODC_06270 cysE +0.7 0.7 serine O-acetyltransferase compare
MCAODC_19765 yedP +0.7 2.4 mannosyl-3-phosphoglycerate phosphatase-related protein compare
MCAODC_23265 +0.7 2.4 antitoxin compare
MCAODC_13985 menB +0.7 3.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
MCAODC_13685 fabB +0.7 1.2 beta-ketoacyl-ACP synthase I compare
MCAODC_22825 ycfT +0.7 2.9 Inner membrane protein YcfT compare
MCAODC_05810 escT +0.7 1.9 type III secretion system LEE export apparatus protein EscT compare
MCAODC_14850 +0.7 1.6 Replication protein O compare
MCAODC_03610 +0.7 1.5 sugar ABC transporter compare
MCAODC_15645 yciK +0.7 1.6 YciK family oxidoreductase compare
MCAODC_18425 chbG +0.7 1.4 chitin disaccharide deacetylase compare
MCAODC_11640 +0.7 0.9 DinI-like protein Z3916/ECs3483 compare
MCAODC_14330 ccmA +0.7 1.3 cytochrome c biogenesis heme-transporting ATPase CcmA compare
MCAODC_20890 +0.7 2.4 Endolysin compare
MCAODC_22455 pepT +0.7 2.9 peptidase T compare
MCAODC_17810 hdhA +0.7 1.4 7-alpha-hydroxysteroid dehydrogenase compare
MCAODC_13265 +0.7 1.4 hypothetical protein compare
MCAODC_05785 cesAB +0.7 0.8 chaperone for EspA and EspB compare
MCAODC_09790 yqgE +0.7 2.3 YqgE/AlgH family protein compare
MCAODC_27885 +0.7 1.8 hypothetical protein compare
MCAODC_20145 +0.7 0.9 DUF1391 domain-containing protein compare
MCAODC_23110 yceO +0.7 0.8 Uncharacterized protein YceO compare
MCAODC_03165 phnH +0.7 1.3 phosphonate C-P lyase system protein PhnH compare
MCAODC_16730 +0.7 1.4 Protein HipA compare
MCAODC_02770 hfq +0.7 2.1 RNA chaperone Hfq compare
MCAODC_16235 aldA +0.7 1.6 aldehyde dehydrogenase compare
MCAODC_21065 +0.7 2.2 ADP-ribosylglycohydrolase family protein compare
MCAODC_16130 ydbJ +0.7 0.5 Uncharacterized protein YdbJ compare
MCAODC_23905 eAL +0.6 0.9 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
MCAODC_24750 ssuB +0.6 1.5 aliphatic sulfonates ABC transporter ATP-binding protein compare
MCAODC_19375 yecA +0.6 1.3 UPF0149 family protein YecA compare
MCAODC_18140 sufS +0.6 1.7 cysteine desulfurase SufS compare
MCAODC_01110 secM +0.6 0.6 secA translation cis-regulator SecM compare
MCAODC_18515 ydjX +0.6 2.2 TVP38/TMEM64 family membrane protein YdjX compare
MCAODC_14300 napD +0.6 0.8 chaperone NapD compare
MCAODC_10315 +0.6 1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
MCAODC_20825 +0.6 2.1 phage tail protein compare
MCAODC_11045 pphB +0.6 2.1 protein-serine/threonine phosphatase compare
MCAODC_11120 hycF +0.6 2.5 formate hydrogenlyase subunit HycF compare
MCAODC_19075 +0.6 1.3 hypothetical protein compare
MCAODC_19225 yecT +0.6 1.2 Uncharacterized protein YecT compare
MCAODC_19855 yodB +0.6 1.8 Cytochrome b561-like protein compare
MCAODC_04270 glpF +0.6 3.2 glycerol uptake facilitator protein GlpF compare
MCAODC_04275 glpK +0.6 4.6 glycerol kinase GlpK compare
MCAODC_03685 yjbD +0.6 1.9 Uncharacterized protein YjbD compare
MCAODC_05950 escF +0.6 1.1 type III secretion system LEE needle filament protein EscF compare
MCAODC_03500 +0.6 1.5 phage tail protein compare
MCAODC_23780 +0.6 1.0 Uncharacterized function compare
MCAODC_10245 Gly_trna +0.6 1.0 tRNA-Gly(ccc) compare
MCAODC_21335 +0.6 0.7 phage tail protein compare
MCAODC_13455 +0.6 0.7 hypothetical protein compare
MCAODC_24095 torR +0.6 2.0 two-component system response regulator TorR compare
MCAODC_27015 fimC +0.6 1.4 type 1 fimbria chaperone FimC compare
MCAODC_09315 ygiB +0.6 2.1 DUF1190 domain-containing protein compare
MCAODC_01805 rimI +0.6 3.5 ribosomal protein S18-alanine N-acetyltransferase compare
MCAODC_02255 +0.6 2.6 NIPSNAP family protein compare
MCAODC_21970 +0.6 1.4 autotransporter outer membrane beta-barrel domain-containing protein compare
MCAODC_16970 +0.6 1.8 Phage-related protein, tail protein J compare
MCAODC_18775 leuE +0.6 1.8 leucine efflux protein LeuE compare
MCAODC_10840 ygcW +0.6 1.9 Uncharacterized oxidoreductase YgcW compare
MCAODC_17510 dnaC +0.6 1.4 DNA replication protein DnaC compare
MCAODC_19045 yebF +0.6 0.9 Protein YebF compare
MCAODC_00415 tssL +0.6 1.7 Type VI secretion system protein TssL compare
MCAODC_03185 phnL +0.6 2.8 phosphonate C-P lyase system protein PhnL compare
MCAODC_19355 yecR +0.6 1.1 Uncharacterized protein YecR compare
MCAODC_10275 +0.6 1.1 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
MCAODC_27925 tauB +0.6 3.0 taurine ABC transporter ATP-binding subunit compare
MCAODC_21075 yegW +0.6 1.7 Uncharacterized HTH-type transcriptional regulator YegW compare
MCAODC_21225 yehP +0.6 1.6 Uncharacterized protein YehP compare
MCAODC_17015 +0.6 1.7 phage tail protein compare
MCAODC_21505 eCs1768 +0.6 2.1 DNA-binding protein compare
MCAODC_22155 gpA1 +0.6 1.5 terminase compare
MCAODC_05720 +0.6 2.5 NCS2 family permease compare
MCAODC_26120 cobO +0.6 2.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
MCAODC_13705 usg +0.6 1.7 aspartate-semialdehyde dehydrogenase compare
MCAODC_09620 +0.6 1.2 adherence protein compare
MCAODC_18420 katE +0.6 2.4 catalase HPII compare
MCAODC_14050 yfaZ +0.6 2.6 Outer membrane protein YfaZ compare
MCAODC_20440 hisH +0.6 1.2 imidazole glycerol phosphate synthase subunit HisH compare
MCAODC_00005 ybcW +0.6 1.9 Uncharacterized protein YbcW compare
MCAODC_21175 +0.5 2.6 DUF4132 domain-containing protein compare
MCAODC_17100 +0.5 1.9 AraC family transcriptional regulator compare
MCAODC_24925 dmsC +0.5 2.1 dimethyl sulfoxide reductase anchor subunit DmsC compare
MCAODC_26295 kdpE +0.5 2.0 two-component system response regulator KdpE compare
MCAODC_17830 add +0.5 1.3 adenosine deaminase compare
MCAODC_14430 yejE +0.5 2.5 Inner membrane ABC transporter permease protein YejE compare
MCAODC_19150 +0.5 1.3 putative transcriptional regulatory protein YebC compare
MCAODC_05900 map +0.5 1.7 type III secretion system LEE effector Map (Rho guanine exchange factor) compare
MCAODC_28220 yahF +0.5 2.2 Uncharacterized protein YahF compare
MCAODC_22450 roxA +0.5 2.6 [50S ribosomal protein L16]-arginine 3-hydroxylase compare
MCAODC_17800 lacZ +0.5 1.7 Beta-galactosidase/beta-glucuronidase compare
MCAODC_25870 ybhC +0.5 3.7 putative acyl-CoA thioester hydrolase compare
MCAODC_24815 elyC +0.5 2.5 envelope biogenesis factor ElyC compare
MCAODC_12315 +0.5 0.4 hypothetical protein compare
MCAODC_25260 gstB +0.5 2.1 glutathione S-transferase GstB compare
MCAODC_18705 yeaH +0.5 2.3 UPF0229 protein YeaH compare
MCAODC_24430 +0.5 0.8 Endodeoxyribonuclease RusA compare
MCAODC_12860 fryB +0.5 1.2 PTS system fructose-like EIIB component 1 compare
MCAODC_12570 eutN +0.5 0.8 ethanolamine utilization microcompartment protein EutN compare
MCAODC_20765 baeR +0.5 1.7 two-component system response regulator BaeR compare
MCAODC_13065 +0.5 1.5 50S ribosomal protein L7/L12 compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in no phage control experiments

For no phage control No phage across organisms