Experiment set4S459 for Escherichia coli ECRC98

Compare to:

WM_TP6

200 most important genes:

  gene name fitness t score description  
JDDGAC_16935 purH -5.7 -16.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_28525 wzy -5.6 -2.8 O157 family O-antigen polymerase compare
JDDGAC_28540 rfbE -5.5 -2.5 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_12090 pgpA -5.5 -2.4 phosphatidylglycerophosphatase A compare
JDDGAC_25875 purC -5.5 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_27740 -5.4 -1.4 regulator compare
JDDGAC_28510 -5.4 -11.0 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_22885 yggS -5.3 -8.1 pyridoxal phosphate homeostasis protein compare
JDDGAC_28575 perB -5.3 -4.5 GDP-perosamine N-acetyltransferase compare
JDDGAC_26675 purF -5.2 -12.6 amidophosphoribosyltransferase compare
JDDGAC_19290 waaO -5.2 -4.9 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_06675 -5.1 -2.3 hypothetical protein compare
JDDGAC_11490 purK -5.1 -6.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_05075 yciZ -5.0 -1.3 UPF0509 protein YciZ compare
JDDGAC_21820 yhbP -4.8 -2.4 YhbP family protein compare
JDDGAC_27425 yeiL -4.7 -1.2 Regulatory protein YeiL compare
JDDGAC_28560 wbdQ -4.7 -2.1 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_18205 wecA -4.5 -16.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_28520 wcaA -4.5 -1.7 glycosyl transferase compare
JDDGAC_19305 rfaB -4.5 -5.1 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_25135 purL -4.4 -16.8 phosphoribosylformylglycinamidine synthase compare
JDDGAC_28955 rrrD -4.4 -2.5 lysozyme RrrD compare
JDDGAC_19185 rpoZ -4.3 -1.1 DNA-directed RNA polymerase subunit omega compare
JDDGAC_14420 surA -4.3 -4.1 peptidylprolyl isomerase SurA compare
JDDGAC_18405 mnmG -4.2 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_19280 rfaG -4.2 -5.0 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_28445 wcaE -4.1 -1.9 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_11485 purE -4.0 -4.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_25755 purM -4.0 -6.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_16040 yjeI -4.0 -2.5 Uncharacterized protein YjeI compare
JDDGAC_09385 lrp -3.9 -4.4 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_03880 yddG -3.9 -2.0 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_24675 -3.9 -1.0 hypothetical protein compare
JDDGAC_15870 purA -3.9 -2.6 adenylosuccinate synthase compare
JDDGAC_25750 purN -3.8 -5.6 phosphoribosylglycinamide formyltransferase compare
JDDGAC_14430 rsmA -3.8 -2.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_20740 aroK -3.8 -3.4 shikimate kinase AroK compare
JDDGAC_11470 cysS -3.8 -1.0 cysteine--tRNA ligase compare
JDDGAC_12265 proC -3.7 -2.6 pyrroline-5-carboxylate reductase compare
JDDGAC_19300 rfaJ -3.6 -3.9 glucosyltransferase compare
JDDGAC_04130 ydcH -3.6 -1.3 Uncharacterized protein YdcH compare
JDDGAC_19285 rfaP -3.6 -2.5 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_29975 sopA -3.6 -4.2 plasmid-partitioning protein SopA compare
JDDGAC_29980 sopA -3.6 -1.3 plasmid-partitioning protein SopA compare
JDDGAC_25435 guaB -3.4 -5.3 IMP dehydrogenase compare
JDDGAC_19310 rfaL -3.4 -3.5 O-antigen ligase RfaL compare
JDDGAC_27065 yfaE -3.4 -1.3 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_30080 flmC -3.4 -1.2 Protein FlmC compare
JDDGAC_21580 lptC -3.4 -2.1 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_07155 ndh -3.3 -3.0 NADH-quinone dehydrogenase compare
JDDGAC_19070 escG -3.3 -1.2 type III secretion system LEE needle protein cochaperone EscG compare
JDDGAC_17125 5S_rrna -3.3 -1.2 5S ribosomal RNA compare
JDDGAC_25690 -3.3 -2.1 acyltransferase compare
JDDGAC_09100 serC -3.2 -7.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_14440 apaH -3.2 -2.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_04850 tyrR -3.2 -1.9 transcriptional regulator TyrR compare
JDDGAC_16940 purD -3.2 -6.4 Phosphoribosylamine--glycine ligase compare
JDDGAC_26670 cvpA -3.2 -4.2 colicin V production protein compare
JDDGAC_01225 yeaQ -3.1 -1.2 UPF0410 protein YeaQ compare
JDDGAC_23100 serA -3.0 -5.9 phosphoglycerate dehydrogenase compare
JDDGAC_25415 bamB -2.9 -3.9 outer membrane protein assembly factor BamB compare
JDDGAC_14795 serB -2.8 -3.7 phosphoserine phosphatase compare
JDDGAC_10205 -2.8 -1.4 Putative bacteriophage protein (Gene 65) compare
JDDGAC_25440 guaA -2.8 -1.9 glutamine-hydrolyzing GMP synthase compare
JDDGAC_08445 lomR -2.8 -1.0 Ail/Lom family protein compare
JDDGAC_00825 nudB -2.8 -1.0 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_07395 dinI -2.7 -1.0 DNA damage-inducible protein I compare
JDDGAC_11235 fepD -2.6 -2.9 ferrienterobactin ABC transporter permease compare
JDDGAC_25855 gcvR -2.6 -3.6 glycine cleavage system transcriptional repressor compare
JDDGAC_03505 ydfJ -2.6 -2.1 Putative transporter YdfJ compare
JDDGAC_15675 cysQ -2.5 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_05550 -2.5 -2.2 Uncharacterized protein gp11 compare
JDDGAC_05985 galU -2.5 -4.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_28830 -2.4 -3.4 Endonuclease compare
JDDGAC_14270 rsmH -2.3 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_17890 rfaH -2.3 -1.9 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_02330 mlc -2.3 -2.0 DNA-binding transcriptional repressor Mlc compare
JDDGAC_26350 yfdY -2.2 -1.9 Uncharacterized protein YfdY compare
JDDGAC_08130 cadC1 -2.2 -1.0 transcriptional regulator compare
JDDGAC_05730 ymfQ -2.1 -1.4 Bacteriophage Mu-like, Gp48 compare
JDDGAC_11975 -2.1 -3.2 Lon protease compare
JDDGAC_06145 prs -2.1 -2.0 ribose-phosphate diphosphokinase compare
JDDGAC_06755 -2.1 -1.1 hypothetical protein compare
JDDGAC_06775 -2.1 -1.8 CP4-44 prophage putative disrupted hemin or colicin receptor compare
JDDGAC_00285 fliI -2.0 -1.8 flagellum-specific ATP synthase FliI compare
JDDGAC_07800 tnpB -2.0 -1.6 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_05535 -2.0 -1.3 hypothetical protein compare
JDDGAC_00270 fliL -2.0 -2.3 flagellar basal body-associated protein FliL compare
JDDGAC_06890 -2.0 -0.9 HNH endonuclease compare
JDDGAC_00935 yebF -2.0 -1.2 Protein YebF compare
JDDGAC_28695 -2.0 -1.2 hypothetical protein compare
JDDGAC_09815 mntS -1.9 -1.5 manganase accumulation protein MntS compare
JDDGAC_04710 fimB -1.9 -2.5 site-specific integrase compare
JDDGAC_06165 ychF -1.9 -1.2 redox-regulated ATPase YchF compare
JDDGAC_11305 ybdJ -1.9 -1.3 Uncharacterized protein YbdJ compare
JDDGAC_00750 flhe -1.9 -1.6 flagellar protein FlhE compare
JDDGAC_30190 tap -1.9 -1.9 RepA leader peptide Tap compare
JDDGAC_20665 ompR_G63V -1.8 -3.4 two-component system response regulator OmpR compare
JDDGAC_28685 -1.8 -1.2 AlpA family transcriptional regulator compare
JDDGAC_24115 cysC -1.8 -6.1 Adenylyl-sulfate kinase compare
JDDGAC_13035 -1.8 -0.8 tRNA-Xxx compare
JDDGAC_03920 narW -1.8 -1.8 nitrate reductase molybdenum cofactor assembly chaperone compare
JDDGAC_08705 -1.8 -1.1 Rha family transcriptional regulator compare
JDDGAC_19120 tnp-IS3 -1.8 -0.9 IS3 family transposase compare
JDDGAC_17735 glnG -1.8 -1.0 nitrogen regulation protein NR(I) compare
JDDGAC_13940 dksA -1.8 -6.4 RNA polymerase-binding protein DksA compare
JDDGAC_23480 -1.8 -1.1 type III secretion apparatus protein OrgA/MxiK compare
JDDGAC_13000 -1.8 -1.0 AAA family ATPase compare
JDDGAC_01085 -1.7 -1.8 Membrane protein compare
JDDGAC_18020 corA -1.7 -2.5 magnesium/cobalt transporter CorA compare
JDDGAC_14275 mraZ -1.7 -1.1 division/cell wall cluster transcriptional repressor MraZ compare
JDDGAC_18890 ler -1.7 -1.5 transcription regulator Ler compare
JDDGAC_19320 rfaF -1.7 -1.6 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_01295 yeaE -1.7 -2.4 methylglyoxal reductase YeaE compare
JDDGAC_12615 yahI -1.7 -3.1 Carbamate kinase-like protein YahI compare
JDDGAC_07260 yceD -1.7 -1.5 23S rRNA accumulation protein YceD compare
JDDGAC_29920 -1.7 -1.9 hypothetical protein compare
JDDGAC_08660 -1.6 -1.6 DUF968 domain-containing protein compare
JDDGAC_24800 rnfH -1.6 -2.8 RnfH family protein compare
JDDGAC_13950 pcnB -1.6 -3.3 polynucleotide adenylyltransferase PcnB compare
JDDGAC_07410 yceO -1.6 -0.8 Uncharacterized protein YceO compare
JDDGAC_14280 cra -1.6 -2.7 catabolite repressor/activator compare
JDDGAC_03925 narI -1.6 -3.7 respiratory nitrate reductase subunit gamma compare
JDDGAC_20435 -1.6 -1.4 hypothetical protein compare
JDDGAC_05525 -1.6 -0.7 host nuclease inhibitor protein compare
JDDGAC_21930 -1.6 -2.0 D-tagatose-1,6-bisphosphate aldolase subunit KbaY compare
JDDGAC_25955 eutS -1.6 -1.5 Bacterial microcompartment shell protein EutS compare
JDDGAC_08805 yccU -1.6 -1.3 Uncharacterized protein YccU compare
JDDGAC_25410 yfgM -1.6 -1.2 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_05275 -1.6 -1.3 Mutator family transposase compare
JDDGAC_06230 fadR -1.6 -1.7 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_01715 ppsR -1.5 -2.1 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
JDDGAC_12985 -1.5 -1.4 Ogr/Delta-like zinc finger compare
JDDGAC_16275 -1.5 -1.0 Phosphonate ABC transporter permease protein PhnE compare
JDDGAC_22140 yqiM -1.5 -1.0 Protein YqiM compare
JDDGAC_10275 -1.5 -0.7 DUF1382 domain-containing protein compare
JDDGAC_24805 bamE -1.5 -1.9 outer membrane protein assembly factor BamE compare
JDDGAC_04235 ynbC -1.5 -1.9 Uncharacterized protein YnbC compare
JDDGAC_10355 acrZ -1.5 -0.9 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_08295 cbpM -1.5 -0.7 chaperone modulator CbpM compare
JDDGAC_10470 tolR -1.4 -1.9 colicin uptake protein TolR compare
JDDGAC_14465 kefF -1.4 -1.3 glutathione-regulated potassium-efflux system oxidoreductase KefF compare
JDDGAC_00155 hprS -1.4 -1.4 two-component system sensor histidine kinase HprS compare
JDDGAC_02000 mepH -1.4 -1.0 peptidoglycan DD-endopeptidase MepH compare
JDDGAC_28670 yeeD -1.4 -0.9 Putative sulfur carrier protein YeeD compare
JDDGAC_11805 recR -1.4 -1.4 recombination mediator RecR compare
JDDGAC_02480 -1.4 -1.4 DUF1627 domain-containing protein compare
JDDGAC_28265 -1.4 -1.5 Uncharacterized protein YegR compare
JDDGAC_28590 wzzB -1.4 -4.9 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_06565 ybcN -1.4 -0.6 Uncharacterized protein YbcN compare
JDDGAC_09460 aqpZ -1.4 -2.9 aquaporin Z compare
JDDGAC_00480 cysE -1.4 -1.3 serine acetyltransferase compare
JDDGAC_10605 sdhC -1.4 -1.4 succinate dehydrogenase cytochrome b556 subunit compare
JDDGAC_11250 fepE -1.4 -2.7 LPS O-antigen length regulator compare
JDDGAC_06140 ispE -1.3 -0.8 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_04295 ydbJ -1.3 -1.1 Uncharacterized protein YdbJ compare
JDDGAC_16955 -1.3 -2.0 zinc resistance-associated protein compare
JDDGAC_00135 msrQ -1.3 -1.7 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
JDDGAC_23510 -1.3 -2.6 Transcriptional regulator compare
JDDGAC_04225 azoR -1.3 -1.5 FMN-dependent NADH-azoreductase compare
JDDGAC_17425 yiiR -1.3 -1.3 Uncharacterized protein YiiR compare
JDDGAC_20700 igaA -1.3 -1.3 intracellular growth attenuator protein IgaA compare
JDDGAC_03845 sra -1.3 -1.1 stationary-phase-induced ribosome-associated protein compare
JDDGAC_07585 -1.3 -1.9 restriction endonuclease compare
JDDGAC_23285 ygfM -1.3 -2.3 Uncharacterized protein YgfM compare
JDDGAC_10505 -1.3 -2.3 hypothetical protein compare
JDDGAC_08995 aspC -1.3 -2.0 aspartate transaminase compare
JDDGAC_21780 deaD -1.3 -2.0 ATP-dependent RNA helicase DeaD compare
JDDGAC_28010 yehS -1.3 -1.1 Uncharacterized protein YehS compare
JDDGAC_07380 grxB -1.2 -2.1 glutaredoxin 2 compare
JDDGAC_04095 sutR -1.2 -1.3 DNA-binding transcriptional regulator SutR compare
JDDGAC_14450 -1.2 -0.8 antitoxin compare
JDDGAC_28960 -1.2 -2.3 lysis protein compare
JDDGAC_23300 mocA -1.2 -2.0 molybdenum cofactor cytidylyltransferase compare
JDDGAC_18600 -1.2 -0.9 hypothetical protein compare
JDDGAC_06265 ycgN -1.2 -0.7 YcgN family cysteine cluster protein compare
JDDGAC_12655 yahD -1.2 -2.7 Putative ankyrin repeat protein YahD compare
JDDGAC_26805 nuoA -1.2 -1.4 NADH-quinone oxidoreductase subunit NuoA compare
JDDGAC_24035 cysJ -1.2 -4.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_14435 apaG -1.2 -1.0 Co2+/Mg2+ efflux protein ApaG compare
JDDGAC_10390 gpmA -1.2 -2.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
JDDGAC_01610 pfkB -1.2 -2.4 6-phosphofructokinase II compare
JDDGAC_03995 yncG -1.2 -1.8 Uncharacterized GST-like protein YncG compare
JDDGAC_07065 -1.2 -1.1 DUF1391 domain-containing protein compare
JDDGAC_04325 -1.2 -0.9 peptidase M85 compare
JDDGAC_25025 srmB -1.2 -2.8 ATP-dependent RNA helicase SrmB compare
JDDGAC_00910 zwf -1.2 -1.0 glucose-6-phosphate dehydrogenase compare
JDDGAC_12115 nrdR -1.2 -0.7 transcriptional regulator NrdR compare
JDDGAC_08045 fabB -1.1 -1.3 beta-ketoacyl synthase compare
JDDGAC_03775 gadB -1.1 -1.2 glutamate decarboxylase compare
JDDGAC_06045 -1.1 -1.0 hypothetical protein compare
JDDGAC_06700 -1.1 -1.0 DUF4222 domain-containing protein compare
JDDGAC_03705 fimA -1.1 -0.8 type 1 fimbrial major subunit FimA compare
JDDGAC_17360 hslV -1.1 -1.5 ATP-dependent protease subunit HslV compare
JDDGAC_18740 yidH -1.1 -1.8 Inner membrane protein YidH compare
JDDGAC_18505 pstC -1.1 -2.8 phosphate ABC transporter permease PstC compare
JDDGAC_19180 spoT -1.1 -1.9 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
JDDGAC_23420 -1.1 -0.9 type III secretion protein compare
JDDGAC_25245 hcaC -1.1 -2.0 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
JDDGAC_03640 uxaB -1.1 -1.5 tagaturonate reductase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms