Experiment set4S426 for Escherichia coli ECRC98

Compare to:

WM_Lambda

200 most important genes:

  gene name fitness t score description  
JDDGAC_25875 purC -7.7 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_25410 yfgM -6.1 -2.7 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_26675 purF -6.0 -10.8 amidophosphoribosyltransferase compare
JDDGAC_25755 purM -6.0 -12.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_16935 purH -5.9 -16.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_25135 purL -5.7 -20.9 phosphoribosylformylglycinamidine synthase compare
JDDGAC_27740 -5.5 -1.5 regulator compare
JDDGAC_25435 guaB -5.4 -3.7 IMP dehydrogenase compare
JDDGAC_28700 -5.3 -2.4 DUF551 domain-containing protein compare
JDDGAC_10355 acrZ -5.2 -1.4 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_06615 nudJ -5.2 -2.3 phosphatase NudJ compare
JDDGAC_09920 espX2 -5.0 -2.3 type III secretion system effector EspX2 compare
JDDGAC_08445 lomR -4.9 -1.3 Ail/Lom family protein compare
JDDGAC_11375 -4.9 -1.3 hypothetical protein compare
JDDGAC_07345 flgM -4.8 -1.3 anti-sigma-28 factor FlgM compare
JDDGAC_16940 purD -4.8 -7.9 Phosphoribosylamine--glycine ligase compare
JDDGAC_01260 yeaL -4.7 -2.4 UPF0756 membrane protein CKO_01811 compare
JDDGAC_15900 miaA -4.7 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_21580 lptC -4.7 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_07825 -4.7 -1.2 Membrane protein compare
JDDGAC_25690 -4.6 -2.4 acyltransferase compare
JDDGAC_25750 purN -4.5 -6.2 phosphoribosylglycinamide formyltransferase compare
JDDGAC_27680 -4.5 -1.7 Ead/Ea22-like protein compare
JDDGAC_26485 Arg_trna -4.3 -3.1 tRNA-Arg(cct) compare
JDDGAC_15250 -4.3 -1.1 Orf compare
JDDGAC_19040 sepL -4.2 -1.6 type III secretion system LEE gatekeeper SepL compare
JDDGAC_14075 acnB -4.2 -2.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_07640 -4.2 -1.6 DNA-binding protein compare
JDDGAC_23425 fliN -4.1 -1.1 YscQ/HrcQ family type III secretion apparatus protein compare
JDDGAC_29305 ycdB -4.1 -2.5 putative transcriptional regulatory protein YcdB compare
JDDGAC_15870 purA -4.0 -2.7 adenylosuccinate synthase compare
JDDGAC_03335 -3.8 -1.4 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_09100 serC -3.8 -10.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_10170 -3.7 -2.3 recombinase RecA compare
JDDGAC_18405 mnmG -3.7 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_12495 cynR -3.6 -2.1 transcriptional regulator CynR compare
JDDGAC_28600 hisF -3.6 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
JDDGAC_28540 rfbE -3.6 -2.0 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_11485 purE -3.6 -3.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_00750 flhe -3.6 -1.7 flagellar protein FlhE compare
JDDGAC_05255 -3.6 -1.3 hypothetical protein compare
JDDGAC_01245 yeaO -3.5 -1.3 Uncharacterized protein YeaO compare
JDDGAC_14440 apaH -3.3 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_10465 tolA -3.3 -2.3 cell envelope integrity protein TolA compare
JDDGAC_11490 purK -3.3 -5.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_12090 pgpA -3.2 -1.9 phosphatidylglycerophosphatase A compare
JDDGAC_19320 rfaF -3.0 -1.9 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_00595 -3.0 -1.6 DUF2511 domain-containing protein compare
JDDGAC_25440 guaA -2.9 -2.0 glutamine-hydrolyzing GMP synthase compare
JDDGAC_10470 tolR -2.9 -4.9 colicin uptake protein TolR compare
JDDGAC_14795 serB -2.9 -4.4 phosphoserine phosphatase compare
JDDGAC_27425 yeiL -2.8 -1.1 Regulatory protein YeiL compare
JDDGAC_28885 ninG -2.7 -1.9 Protein ninG compare
JDDGAC_10475 tolQ -2.6 -2.3 Tol-Pal system protein TolQ compare
JDDGAC_07445 yceK -2.6 -1.7 YceK/YidQ family lipoprotein compare
JDDGAC_03880 yddG -2.6 -1.8 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_10225 -2.6 -1.2 DUF3927 domain-containing protein compare
JDDGAC_16385 ytcA -2.6 -1.0 Uncharacterized protein YtcA compare
JDDGAC_10540 -2.5 -1.4 DUF4387 domain-containing protein compare
JDDGAC_24800 rnfH -2.4 -2.8 RnfH family protein compare
JDDGAC_10570 sucC -2.4 -2.9 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_02485 -2.4 -3.0 DUF977 domain-containing protein compare
JDDGAC_13120 -2.4 -1.2 DUF2635 domain-containing protein compare
JDDGAC_20125 ptsH -2.3 -3.1 HPr family phosphocarrier protein compare
JDDGAC_06425 -2.3 -1.6 phage minor tail protein L compare
JDDGAC_11920 glnK -2.3 -1.6 P-II family nitrogen regulator compare
JDDGAC_03900 espR1 -2.3 -2.2 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_09835 rhtA -2.3 -2.5 threonine/homoserine exporter RhtA compare
JDDGAC_29980 sopA -2.2 -1.1 plasmid-partitioning protein SopA compare
JDDGAC_10285 -2.2 -0.8 Cell division protein ZapA compare
JDDGAC_07485 csgC -2.2 -1.1 curli assembly protein CsgC compare
JDDGAC_02225 ydgA -2.2 -1.4 Protein YdgA compare
JDDGAC_05985 galU -2.2 -2.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_07155 ndh -2.1 -2.3 NADH-quinone dehydrogenase compare
JDDGAC_26850 nuoK -2.1 -2.9 NADH-quinone oxidoreductase subunit NuoK compare
JDDGAC_23100 serA -2.1 -4.8 phosphoglycerate dehydrogenase compare
JDDGAC_06360 yciE -2.1 -1.5 Protein YciF compare
JDDGAC_03670 lsrC -2.1 -1.5 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_02145 rsxA -2.0 -1.1 electron transport complex subunit RsxA compare
JDDGAC_00520 -2.0 -1.9 Phage protein compare
JDDGAC_04540 -2.0 -1.8 ORF6N domain-containing protein compare
JDDGAC_19120 tnp-IS3 -2.0 -1.1 IS3 family transposase compare
JDDGAC_04195 ydcF -2.0 -2.2 Protein YdcF compare
JDDGAC_06295 minC -2.0 -1.9 septum site-determining protein MinC compare
JDDGAC_03505 ydfJ -2.0 -1.8 Putative transporter YdfJ compare
JDDGAC_02045 sodC -2.0 -1.8 superoxide dismutase [Cu-Zn] SodC compare
JDDGAC_27715 bet -1.9 -1.9 phage recombination protein Bet compare
JDDGAC_03175 eCs1768 -1.9 -1.0 DNA-binding protein compare
JDDGAC_13890 -1.9 -1.6 Protein YadX compare
JDDGAC_06605 icd -1.9 -2.7 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_15525 mgtL -1.8 -1.2 mgtA leader peptide compare
JDDGAC_03645 tam -1.8 -1.5 trans-aconitate 2-methyltransferase compare
JDDGAC_09385 lrp -1.8 -2.1 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_04370 rri1 -1.8 -1.3 phage tail protein compare
JDDGAC_21820 yhbP -1.8 -2.0 YhbP family protein compare
JDDGAC_06625 hflD -1.8 -2.6 high frequency lysogenization protein HflD compare
JDDGAC_29030 -1.8 -1.9 Putative prophage portal protein compare
JDDGAC_05525 -1.8 -0.8 host nuclease inhibitor protein compare
JDDGAC_06135 lolB -1.8 -1.6 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_03285 -1.8 -1.5 DUF968 domain-containing protein compare
JDDGAC_04855 ycjF -1.8 -3.2 UPF0283 membrane protein YcjF compare
JDDGAC_15395 -1.8 -1.1 XRE family transcriptional regulator compare
JDDGAC_00970 holE -1.8 -1.7 DNA polymerase III subunit theta compare
JDDGAC_09990 moaD -1.7 -0.9 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_27045 -1.7 -0.8 hypothetical protein compare
JDDGAC_04320 uspF -1.7 -3.3 universal stress protein UspF compare
JDDGAC_23365 Gly_trna -1.7 -2.2 tRNA-Gly(ccc) compare
JDDGAC_26340 ypdK -1.7 -1.0 membrane protein YpdK compare
JDDGAC_05740 -1.7 -1.1 phage tail protein compare
JDDGAC_22880 yggT -1.7 -1.1 osmotic shock tolerance protein YggT compare
JDDGAC_30080 flmC -1.7 -1.0 Protein FlmC compare
JDDGAC_28695 -1.7 -1.2 hypothetical protein compare
JDDGAC_10565 sucD -1.7 -2.2 succinate--CoA ligase subunit alpha compare
JDDGAC_05905 yciI -1.6 -1.6 YciI family protein compare
JDDGAC_20555 glpD -1.6 -3.6 glycerol-3-phosphate dehydrogenase compare
JDDGAC_02305 ydgD -1.6 -3.0 Uncharacterized serine protease YdgD compare
JDDGAC_28935 -1.6 -2.0 sialate O-acetylesterase compare
JDDGAC_13055 -1.6 -1.9 tail fiber assembly protein compare
JDDGAC_01095 manZ -1.6 -3.0 PTS mannose transporter subunit IID compare
JDDGAC_27195 -1.6 -1.5 hypothetical protein compare
JDDGAC_12140 parD -1.6 -1.0 Antitoxin ParD compare
JDDGAC_21770 nlpI -1.6 -5.9 lipoprotein NlpI compare
JDDGAC_10210 -1.6 -1.2 lysis protein compare
JDDGAC_10785 chiQ -1.6 -2.1 Uncharacterized lipoprotein ChiQ compare
JDDGAC_26670 cvpA -1.6 -1.7 colicin V production protein compare
JDDGAC_02370 -1.6 -1.8 DUF1161 domain-containing protein compare
JDDGAC_09900 ybiE -1.6 -1.5 Protein YbiE compare
JDDGAC_27880 -1.6 -1.1 Phage protein compare
JDDGAC_30200 putA1 -1.5 -1.8 CopG family transcriptional regulator compare
JDDGAC_00635 yecJ -1.5 -1.0 Uncharacterized protein YecJ compare
JDDGAC_15675 cysQ -1.5 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_07515 cgsF -1.5 -1.7 curli production assembly/transport protein CsgF compare
JDDGAC_25045 rseA -1.5 -2.9 anti-sigma-E factor RseA compare
JDDGAC_11935 decR -1.5 -2.8 DNA-binding transcriptional regulator DecR compare
JDDGAC_19070 escG -1.5 -0.8 type III secretion system LEE needle protein cochaperone EscG compare
JDDGAC_18015 -1.5 -0.9 DUF943 domain-containing protein compare
JDDGAC_08690 dnaC -1.5 -1.9 DNA replication protein DnaC compare
JDDGAC_03940 nhoA -1.5 -1.7 N-hydroxyarylamine O-acetyltransferase compare
JDDGAC_09000 gloC -1.4 -0.9 hydroxyacylglutathione hydrolase GloC compare
JDDGAC_12265 proC -1.4 -1.9 pyrroline-5-carboxylate reductase compare
JDDGAC_27415 psuG -1.4 -1.9 pseudouridine-5'-phosphate glycosidase compare
JDDGAC_11975 -1.4 -2.1 Lon protease compare
JDDGAC_08035 lolD -1.4 -1.2 lipoprotein-releasing system ATP-binding protein LolD compare
JDDGAC_27065 yfaE -1.4 -0.7 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_24045 cysH -1.4 -3.4 phosphoadenosine phosphosulfate reductase compare
JDDGAC_03685 lsrK -1.4 -1.3 autoinducer-2 kinase compare
JDDGAC_03630 yneG -1.4 -1.1 Uncharacterized protein YneG compare
JDDGAC_19215 rph -1.4 -2.9 ribonuclease PH compare
JDDGAC_11130 rnk -1.4 -1.7 nucleoside diphosphate kinase regulator compare
JDDGAC_06265 ycgN -1.4 -0.7 YcgN family cysteine cluster protein compare
JDDGAC_06120 prmC -1.4 -1.4 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_29975 sopA -1.4 -1.7 plasmid-partitioning protein SopA compare
JDDGAC_10070 nleB2 -1.4 -0.7 type III secretion system effector arginine glycosyltransferase NleB2 compare
JDDGAC_07050 -1.4 -0.8 Rha family transcriptional regulator compare
JDDGAC_06760 -1.4 -1.1 Mutator family transposase compare
JDDGAC_04630 ydaU -1.4 -1.4 Uncharacterized protein YdaU compare
JDDGAC_27050 lysR -1.4 -3.1 transcriptional regulator compare
JDDGAC_07300 flgI -1.4 -2.5 flagellar basal body P-ring protein FlgI compare
JDDGAC_18940 grlR -1.4 -1.2 type III secretion system LEE GrlA-binding negative regulator GrlR compare
JDDGAC_24040 cysI -1.4 -4.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_15130 iraD -1.4 -2.0 anti-adapter protein IraD compare
JDDGAC_10485 ybgE -1.4 -0.7 cyd operon protein YbgE compare
JDDGAC_20435 -1.4 -1.1 hypothetical protein compare
JDDGAC_29430 -1.3 -1.6 DUF551 domain-containing protein compare
JDDGAC_26070 yfeX -1.3 -1.4 porphyrinogen peroxidase compare
JDDGAC_01225 yeaQ -1.3 -0.8 UPF0410 protein YeaQ compare
JDDGAC_23565 -1.3 -0.8 hypothetical protein compare
JDDGAC_25415 bamB -1.3 -2.7 outer membrane protein assembly factor BamB compare
JDDGAC_16780 -1.3 -2.1 Lipoprotein yjbF compare
JDDGAC_04095 sutR -1.3 -1.2 DNA-binding transcriptional regulator SutR compare
JDDGAC_24605 -1.3 -1.9 DUF5508 domain-containing protein compare
JDDGAC_00625 yecR -1.3 -2.5 Uncharacterized protein YecR compare
JDDGAC_01715 ppsR -1.3 -1.6 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
JDDGAC_19420 yibL -1.3 -1.6 YibL family ribosome-associated protein compare
JDDGAC_04225 azoR -1.3 -1.3 FMN-dependent NADH-azoreductase compare
JDDGAC_28670 yeeD -1.3 -0.6 Putative sulfur carrier protein YeeD compare
JDDGAC_06440 -1.3 -2.9 phage tail assembly protein T compare
JDDGAC_24630 xerD -1.3 -1.0 site-specific integrase compare
JDDGAC_28175 -1.3 -0.8 transcription factor compare
JDDGAC_10460 tolB -1.3 -3.5 Tol-Pal system protein TolB compare
JDDGAC_07415 yceJ -1.3 -2.1 Cytochrome b561-like protein compare
JDDGAC_15560 cybC -1.3 -1.5 cytochrome b562 compare
JDDGAC_29425 -1.3 -0.6 Prophage protein compare
JDDGAC_01730 ydiT -1.3 -1.8 Ferredoxin-like protein YdiT compare
JDDGAC_06165 ychF -1.3 -1.3 redox-regulated ATPase YchF compare
JDDGAC_04485 -1.2 -1.0 Holin compare
JDDGAC_10870 miaB -1.2 -5.4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_25110 yfhL -1.2 -2.7 4Fe-4S dicluster ferredoxin YfhL compare
JDDGAC_29920 -1.2 -1.0 hypothetical protein compare
JDDGAC_01035 proQ -1.2 -4.4 RNA chaperone ProQ compare
JDDGAC_04790 uspE -1.2 -1.6 universal stress protein UspE compare
JDDGAC_05175 rluB -1.2 -1.6 23S rRNA pseudouridine(2605) synthase RluB compare
JDDGAC_06945 -1.2 -1.0 DUF1378 domain-containing protein compare
JDDGAC_00615 yecH -1.2 -1.7 Uncharacterized protein YecH compare
JDDGAC_26905 menH -1.2 -2.2 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase compare
JDDGAC_15570 yjgA -1.2 -2.8 ribosome-associated protein compare
JDDGAC_28895 -1.2 -3.0 antiterminator compare
JDDGAC_21265 yhdV -1.2 -2.4 Uncharacterized protein YhdV compare
JDDGAC_20740 aroK -1.2 -1.7 shikimate kinase AroK compare
JDDGAC_29395 eCs1768 -1.2 -1.3 phage replisome organizer compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms